BAC Information

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BAC

Clone NameB6Ng01-009P06
Chromosome4 (Build37)
Map Location 51,285,283 - 51,462,154
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040979, LOC666681, LOC100040814
Downstream geneLOC384015, LOC100041026, LOC100041038, LOC666724, Smc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009P06.bB6Ng01-009P06.g
ACCDH845759DH845760
length9941,221
definitionDH845759|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P06, 5' end.DH845760|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,285,283 - 51,286,026)(51,460,914 - 51,462,154)
sequence
gaattcacttgggccttcttgtttaatttcattggatctgtggggtgtat
catctttcatggttaatattcacttgtcagtgagtacatattatacatgt
tcttttgggtctgggttacctcactaagatgatcttttctaattccatcc
atttccctgcaaaattctggatgtcattattattatttttaaactaaaat
cttttggggggggggcttcttatctaaccatcacctcttttgttaatttt
tttctcttattacgagtaatcattctattcatttacatctcaaatgatat
cccactttgcagtcaccccctctaccaaccctccttcccatgatatcccg
ctcccagtttacccctctggcaatctcccatcctacatctgccctctccc
tccctcatccatgtatgagatttactgtatctagttttacattaaggttc
ttaatccacttggacttcagttttgttcagggtttaaaatatgggtatct
ttgctttcttccaaatacagacatccagctagaccagcaccatttgttga
agaagctttctttttccattgcattgctttggcttcattgtaaagaataa
agtgtccataggtgggtggacttgtttctggtacttcactttgattcctt
tgaccaacctgtctgtttccttaccaataccttgaaatttttatcattat
tgctctgcagtactacttgagtgaggtccttaatctctttttcttgcctt
atagctctagctagaacttcaattactgtatggaatagcttagcagagag
tgggacaaacttgttcatttccctgatttagtgagattgttccaagtttc
tctccatttagtttgatggttgggcaattgtattgctgtacattgttttt
tattatgtttaggtatgtgacttgaatctctgattatccagacattttaa
gataagaggtgctggaattttcagaggctttacagcatctgatg
gaattcacttaaatgagggccccgctttttgtaagatattatctcgtttt
agttgagactaagcttcattcaacacatgtctgcccccatcacagaataa
attacgacttggcaccacaattcttttaagtaaatattttctgtctttta
atttcaaatgaaagtttaccatctgttctgtcctttagtcacaaatgcca
aagtacatcacttactattgtgccatttgcaagctgcagagaggatgaga
tttggtatatggtgtgtctttgcttttaattttacacagccaatatttat
tttcctctctcatccttcaaatataatgaagtatattattctaatttggc
atactgaaacactgcccaggaaatagaaaacaaaagaaatgaagaaggat
aaattgaaagactaagctacaggtctatgcagataaaatgtatctgaagg
gcagtaatcatagagatgttaaatctaattgaatcaggaagatgccatgg
agattgcattgtagccaagactcttggtaaaggaatttcctcaaaataga
aagaattaaggtccaccattccatctggatcttctaataagctacacatt
cttgaaatgtagcaaaaatcatctgagcattaaaaaagacatcacaaatc
gaaatagaagatgggtgtaacaattcatttaagacatgaaagttatatgc
cattcagtttagacttcatcaggccttgtccttgaacagatcacagtgca
aggcacataaactgaattcatttgtagtacaaagaagaggtgttgattaa
taaagtcaataaagaaaacacataacccttgtacagtaactcttatggaa
ctgaattactaatatgaaagtgactgtagtttattaaagtagcactcctg
agccttctaaggctaagcttccctcaaagaatagctctcctctggctgtg
atgagtgtgtccttgaaaagtttctttctgcgttgctttttcatcttata
ttcccacaactgacggggtgtggttgtcatagataagaagcatccattaa
ccagagcaatctggagtctttgtcacagttcagatccagggcagaaacca
taatcagtgatagatactgaaaccaggctactgagcctatgggtgtgggc
tatgtgccattttactgcaactactgaattgagccattttacttacacat
taagagtcactctaggtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_51285283_51286026
seq2: B6Ng01-009P06.b_44_787

seq1  GAATTCACTTGGGCCTTCTTGTTTAACTTCATTGGATCTGTGGGGTGTAT  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTCACTTGGGCCTTCTTGTTTAATTTCATTGGATCTGTGGGGTGTAT  50

seq1  CATCTTTCATGGTTAATATTCACTTGTCAGTGAGTACATATTATACATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCATGGTTAATATTCACTTGTCAGTGAGTACATATTATACATGT  100

seq1  TCTTTTGGGTCTGGGTTACCTCACTAAGATGATCTTTTCTAATTCCATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGGTCTGGGTTACCTCACTAAGATGATCTTTTCTAATTCCATCC  150

seq1  ATTTCCCTGCAAAATTCTGGATGTCATTATTATTATTTTTAAACTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTGCAAAATTCTGGATGTCATTATTATTATTTTTAAACTAAAAT  200

seq1  CTTTTGGGGGGGGGGCTTCTTATCTAACCATCACCTCTTTTGTTAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGGGGGGGGCTTCTTATCTAACCATCACCTCTTTTGTTAATTTT  250

seq1  TTTCTCTTATTACGAGTAATCATTCTATTCATTTACATCTCAAATGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTATTACGAGTAATCATTCTATTCATTTACATCTCAAATGATAT  300

seq1  CCCACTTTGCAGTCACCCCCTCTACCAACCCTCCTTCCCATGATATCCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTGCAGTCACCCCCTCTACCAACCCTCCTTCCCATGATATCCCG  350

seq1  CTCCCAGTTTACCCCTCTGGCAATCTCCCATCCTACATCTGCCCTCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTTTACCCCTCTGGCAATCTCCCATCCTACATCTGCCCTCTCCC  400

seq1  TCCCTCATCCATGTATGAGATTTACTGTATCTAGTTTTACATTAAGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATCCATGTATGAGATTTACTGTATCTAGTTTTACATTAAGGTTC  450

seq1  TTAATCCACTTGGACTTCAGTTTTGTTCAGGGTTTAAAATATGGGTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCACTTGGACTTCAGTTTTGTTCAGGGTTTAAAATATGGGTATCT  500

seq1  TTGCTTTCTTCCAAATACAGACATCCAGCTAGACCAGCACCATTTGTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCTTCCAAATACAGACATCCAGCTAGACCAGCACCATTTGTTGA  550

seq1  AGAAGCTTTCTTTTTCCATTGCATTGCTTTGGCTTCATTGTAAAGAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTTCTTTTTCCATTGCATTGCTTTGGCTTCATTGTAAAGAATAA  600

seq1  AGTGTCCATAGGTGGGTGGACTTGTTTCTGGTACTTCACTTTGATTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCATAGGTGGGTGGACTTGTTTCTGGTACTTCACTTTGATTCCTT  650

seq1  TGACCAACCTGTCTGTTTCCTTACCAATACCTTGAAATTTTTATCATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAACCTGTCTGTTTCCTTACCAATACCTTGAAATTTTTATCATTAT  700

seq1  TGCTCTGCAGTACTACTTGAGTGAGGTCCTTAATCTCTTTTTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCAGTACTACTTGAGTGAGGTCCTTAATCTCTTTTTCT  744

seq1: chr4_51460914_51462154
seq2: B6Ng01-009P06.g_68_1288 (reverse)

seq1  ATACAACCCCTA-AGTGACTCTTAAATATGTAATGATAAAAACTGGCTTC  49
      |||||   |||| |||||||||| ||| |||||   |||||  |||||  
seq2  ATACA---CCTAGAGTGACTCTT-AATGTGTAA--GTAAAA--TGGCTCA  42

seq1  ATATCTAGGTAGATCTGCAGTAAAATGGGCACATAGCACAACACCTATGG  99
      ||   |  ||||   ||||||||||| |||||||||| | ||||| || |
seq2  AT---TCAGTAG--TTGCAGTAAAAT-GGCACATAGC-CCACACCCATAG  85

seq1  GCTTCAGTATGCCTGTGTTCAAGTTATCTATCACTGATTATGGTTTTCTG  149
      || |||||| |||||  ||||   ||||||||||||||||||| ||||||
seq2  GC-TCAGTA-GCCTGGTTTCA--GTATCTATCACTGATTATGG-TTTCTG  130

seq1  -CCTGGTTCTGAACTGTTGACAAAGGACT-CAGATTGCTCTGGTTTATGG  197
       ||||| ||||||||| ||||||| |||| ||||||||||||||| ||||
seq2  CCCTGGATCTGAACTG-TGACAAA-GACTCCAGATTGCTCTGGTTAATGG  178

seq1  ATGGTTCTGTATCTATGACAACCACACCCCGTCAGTTGTGGGATATTAGG  247
      ||| |||| ||||||||||||||||||||||||||||||||||   || |
seq2  ATGCTTCT-TATCTATGACAACCACACCCCGTCAGTTGTGGGAATATAAG  227

seq1  ATGAAAAAGCAACGCAGAAAGAAACTTTTCAAGGACACACTCATCACAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGCAACGCAGAAAGAAACTTTTCAAGGACACACTCATCACAGC  277

seq1  CAGAGGAGAGCTATTCTTTGAGGGAAGCTTAGCCTTAGAAGGCTCAGGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGAGCTATTCTTTGAGGGAAGCTTAGCCTTAGAAGGCTCAGGAG  327

seq1  TGCTACTTTAATAAACTACAGTCACTTTCATATTAGTAATTTCAGTTCCA  397
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCTACTTTAATAAACTACAGTCACTTTCATATTAGTAA-TTCAGTTCCA  376

seq1  TAAGAGTTACTGTACAAGGGTTATGTGTTTTCTTTATTGACTTTATTAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTACTGTACAAGGGTTATGTGTTTTCTTTATTGACTTTATTAAT  426

seq1  CAACACCTCTTCTTTGTACTACAAATGAATTCAG-TTATGTGCCTTGCAC  496
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAACACCTCTTCTTTGTACTACAAATGAATTCAGTTTATGTGCCTTGCAC  476

seq1  TGTGATCTGTTCAAGGACAAGGCCTGATGAAGTCTAAACTGAATGGCATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTGTTCAAGGACAAGGCCTGATGAAGTCTAAACTGAATGGCATA  526

seq1  TAACTTTCATGTCTTAAATGAATTGTTACACCCATCTTCTATTTCGATTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCATGTCTTAAATGAATTGTTACACCCATCTTCTATTTCGATTT  576

seq1  GTGATGTCTTTTTTAATGCTCAGATGATTTTTGCTACATTTCAAGAATGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTCTTTTTTAATGCTCAGATGATTTTTGCTACATTTCAAGAATGT  626

seq1  GTAGCTTATTAGAAGATCCAGATGGAATGGTGGACCTTAATTCTTTCTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTATTAGAAGATCCAGATGGAATGGTGGACCTTAATTCTTTCTAT  676

seq1  TTTGAGGAAATTCCTTTACCAAGAGTCTTGGCTACAATGCAATCTCCATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAAATTCCTTTACCAAGAGTCTTGGCTACAATGCAATCTCCATG  726

seq1  GCATCTTCCTGATTCAATTAGATTTAACATCTCTATGATTACTGCCCTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTCCTGATTCAATTAGATTTAACATCTCTATGATTACTGCCCTTC  776

seq1  AGATACATTTTATCTGCATAGACCTGTAGCTTAGTCTTTCAATTTATCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATTTTATCTGCATAGACCTGTAGCTTAGTCTTTCAATTTATCCT  826

seq1  TCTTCATTTCTTTTGTTTTCTATTTCCTGGGCAGTGTTTCAGTATGCCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTTCTTTTGTTTTCTATTTCCTGGGCAGTGTTTCAGTATGCCAA  876

seq1  ATTAGAATAATATACTTCATTATATTTGAAGGATGAGAGAGGAAAATAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATAATATACTTCATTATATTTGAAGGATGAGAGAGGAAAATAAA  926

seq1  TATTGGCTGTGTAAAATTAAAAGCAAAGACACACCATATACCAAATCTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTGTGTAAAATTAAAAGCAAAGACACACCATATACCAAATCTCA  976

seq1  TCCTCTCTGCAGCTTGCAAATGGCACAATAGTAAGTGATGTACTTTGGCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTGCAGCTTGCAAATGGCACAATAGTAAGTGATGTACTTTGGCA  1026

seq1  TTTGTGACTAAAGGACAGAACAGATGGTAAACTTTCATTTGAAATTAAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACTAAAGGACAGAACAGATGGTAAACTTTCATTTGAAATTAAAA  1076

seq1  GACAGAAAATATTTACTTAAAAGAATTGTGGTGCCAAGTCGTAATTTATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAATATTTACTTAAAAGAATTGTGGTGCCAAGTCGTAATTTATT  1126

seq1  CTGTGATGGGGGCAGACATGTGTTGAATGAAGCTTAGTCTCAACTAAAAC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGGGGGCAGACATGTGTTGAATGAAGCTTAGTCTCAACTAAAAC  1176

seq1  GAGATAATATCTTACAAAAAGCGGGGCCCTCATTTAAGTGAATTC  1241
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATATCTTACAAAAAGCGGGGCCCTCATTTAAGTGAATTC  1221