BAC Information

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BAC

Clone NameB6Ng01-009P17
Chromosome4 (Build37)
Map Location 13,227,834 - 13,392,977
singlet/doubletdoublet
Overlap genenone
Upstream geneOTTMUSG00000004461
Downstream geneLOC100039988, Runx1t1, LOC625831, LOC433687, LOC100040030, LOC433688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009P17.bB6Ng01-009P17.g
ACCDH845781DH845782
length1,1531,211
definitionDH845781|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P17, 5' end.DH845782|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,391,812 - 13,392,977)(13,227,834 - 13,229,068)
sequence
gaattcactacttcaaggtataaaacattgacttgtacataaccaacctt
caataatttatattcttcagtgtagtttatttaaatagaacacgtaaatt
atttacctgaatgatatagaacgctcagttctcatcctcttttctccctg
tggtgctaaggacatgtataaatgatgacaggaaaagaaatgtccatcta
tagagaagctcagcggcccctggctcacagagtttcattttgataccaca
aataaacatagaataattctcagtattaattaatgaataatttgacatta
ttaatgttttgccatctttccatgagctctttaatttttgagtagctgta
atattctagaagatccaatagaccaaggttggcttcaattgtccatccta
acacttccagctggctctacataatatggtgatttattttgttcttgttt
ttagttctaatcgtgaattctatacagaagtccacataaatatacattat
cttttaatggcccattgtgttagtcttatcttcatgatttaaccctgtgt
ctctctgctcaaagaccagctcttactgtgcactgtgctctcatctcttt
agtcaaactagttagtattctaaccgctactcactaatgaactgtattat
tggacaaaaagccacacgccatgttgaaacctaccatatcagtgctctaa
atatttattataaaattgccatgtcatttggtataatgaagtaatgctat
ttaatgttaaggcagcagaatcctatctgttaattctgtttgtatgagta
tttttgtcttctgataatgaaggtgaaaataacatgatgaaattatgctc
attgtattgctacatttagaaacattttagaaaaaatgtatattttattc
tctttatccacttatggatctatcagatctaatataatatctggtgtaaa
tatagaaaaaacatgacactaaactattttgatacaatatttactgaatt
ctttagaaagacaaattcatgactttgtttctccacattattatgtcaac
ccattttatgtttcataattctttctattggagtaagtttgggaatgaat
agaagaagattatggttagtcatgcatttaattatttctgtattgaacta
ttg
gaattcattgcctacttcaaaactgttgttgggtagacgaaaagtattaa
agggaaacatttgcccagagaaatagttacgacaattcacctggctgtag
ccaatattttccatgtatttaccatggtcaggggttccttgagttattac
atcatatttataaagcaagcccatagggtaacagttccattgttacgatt
ttaaaatggaaattaaaaaaaaaaacagagatattgggatttacaattgc
aaataaaaaaagcatagtcagcactaagagattcaactttattgtgacat
gtttccccgtaagactactgtgtgccaccctcaggcttctgagccaattg
tccaagccacattagctaaactccatagcacctacatttatcagctatgc
agaatggttaacctctatcttcttgacagaacgaagagggaaaatgtggg
taagttcaccagaagttgcatatccattgttaaatctgtattgaaagcat
tgtactgttggttatgtatagtttctgctaggattaggtacttcagtggt
tcttaccctgtgggttcttgacccctttgacaaacctgtttcaaacgtta
tttatattacaattcaaaacagtagcaaattacagttatgaagtaataac
aaaagtaatttcattgttgtgggttaccacgacatgagagattatattaa
gaggttgaaacttaggaaggttgagaaccactgatctagttccttgcata
acagaaaagccaagccaccatgcaatttcactaatcctgatcattaactt
tatttaaaatctgggatttcacaatttaagaattccttctcctatattct
tgattttacagataaagaaaattacccactgacccctgtctggagtccaa
ctgtcccacaataccaaacatggtctggaatgctactgattaagtactga
ttcaaaattatatttctatactagatgcttcatttctattctatgtctct
gatctacctctctaagattgggaaatattgtagcagctgacttaccacct
cagctctgtatgaagcaagccttctagtctgtctgattaagggacaaccc
agaacgccttatcaagatggagcttacttactggcacttaagatctgact
aagtgatctagcttctatatgtatcgaaacctccagtatcctcgtgccac
attggttattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13391812_13392977
seq2: B6Ng01-009P17.b_47_1199 (reverse)

seq1  CAATAGTTCAATATCAGAAATAATTTAATGGCATGATATAATCTATTATC  50
      ||||||||||||| ||||||||||| ||| ||||||  ||| | || |||
seq2  CAATAGTTCAATA-CAGAAATAATTAAAT-GCATGA-CTAA-CCATAATC  46

seq1  TCTGTCTATTCATTTCACAAACTGTACT-CAATAGATAGAATTATGAAAC  99
      |   |||||||| ||| |||||| |||| ||||||| |||||||||||||
seq2  TTCTTCTATTCA-TTCCCAAACT-TACTCCAATAGAAAGAATTATGAAAC  94

seq1  ATAAAAATGGGTTGAACATAATAATTGTGGAGAAAACAAAGTCATGAATT  149
      || ||||||||||| ||||||||| ||||||| ||||||||||||||| |
seq2  AT-AAAATGGGTTG-ACATAATAA-TGTGGAG-AAACAAAGTCATGAA-T  139

seq1  TTGTCTTTCTAAAGAATTCAGTAAATATTTGTTATCAAAATAGTTTAGTG  199
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  TTGTCTTTCTAAAGAATTCAGTAAATATT--GTATCAAAATAGTTTAGTG  187

seq1  TCATGTTTTTTCTATATTTACACCAGATATTATATTAGATCTGATAGATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTTTTCTATATTTACACCAGATATTATATTAGATCTGATAGATC  237

seq1  CATAAGTGGATAAAGAGAATAAAATATACATTTTTTTCTAAAATGTTTCT  299
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATAAGTGGATAAAGAGAATAAAATATACA-TTTTTTCTAAAATGTTTCT  286

seq1  AAATGTAGCAATACAATGAGCATAATTTCATCATGTTATTTTCACCTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGCAATACAATGAGCATAATTTCATCATGTTATTTTCACCTTCA  336

seq1  TTATCAGAAGACAAAAATACTCATACAAACAGAATTAACAGATAGGATTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGAAGACAAAAATACTCATACAAACAGAATTAACAGATAGGATTC  386

seq1  TGCTGCCTTAACATTAAATAGCATTACTTCATTATACCAAATGACATGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTTAACATTAAATAGCATTACTTCATTATACCAAATGACATGGC  436

seq1  AATTTTATAATAAATATTTAGAGCACTGATATGGTAGGTTTCAACATGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATAATAAATATTTAGAGCACTGATATGGTAGGTTTCAACATGGC  486

seq1  GTGTGGCTTTTTGTCCAATAATACAGTTCATTAGTGAGTAGCGGTTAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTTTTTGTCCAATAATACAGTTCATTAGTGAGTAGCGGTTAGAA  536

seq1  TACTAACTAGTTTGACTAAAGAGATGAGAGCACAGTGCACAGTAAGAGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACTAGTTTGACTAAAGAGATGAGAGCACAGTGCACAGTAAGAGCT  586

seq1  GGTCTTTGAGCAGAGAGACACAGGGTTAAATCATGAAGATAAGACTAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGAGCAGAGAGACACAGGGTTAAATCATGAAGATAAGACTAACA  636

seq1  CAATGGGCCATTAAAAGATAATGTATATTTATGTGGACTTCTGTATAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGCCATTAAAAGATAATGTATATTTATGTGGACTTCTGTATAGAA  686

seq1  TTCACGATTAGAACTAAAAACAAGAACAAAATAAATCACCATATTATGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGATTAGAACTAAAAACAAGAACAAAATAAATCACCATATTATGTA  736

seq1  GAGCCAGCTGGAAGTGTTAGGATGGACAATTGAAGCCAACCTTGGTCTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGCTGGAAGTGTTAGGATGGACAATTGAAGCCAACCTTGGTCTAT  786

seq1  TGGATCTTCTAGAATATTACAGCTACTCAAAAATTAAAGAGCTCATGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTCTAGAATATTACAGCTACTCAAAAATTAAAGAGCTCATGGAA  836

seq1  AGATGGCAAAACATTAATAATGTCAAATTATTCATTAATTAATACTGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAAAACATTAATAATGTCAAATTATTCATTAATTAATACTGAGA  886

seq1  ATTATTCTATGTTTATTTGTGGTATCAAAATGAAACTCTGTGAGCCAGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTATGTTTATTTGTGGTATCAAAATGAAACTCTGTGAGCCAGGG  936

seq1  GCCGCTGAGCTTCTCTATAGATGGACATTTCTTTTCCTGTCATCATTTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTGAGCTTCTCTATAGATGGACATTTCTTTTCCTGTCATCATTTAT  986

seq1  ACATGTCCTTAGCACCACAGGGAGAAAAGAGGATGAGAACTGAGCGTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCCTTAGCACCACAGGGAGAAAAGAGGATGAGAACTGAGCGTTCT  1036

seq1  ATATCATTCAGGTAAATAATTTACGTGTTCTATTTAAATAAACTACACTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTCAGGTAAATAATTTACGTGTTCTATTTAAATAAACTACACTG  1086

seq1  AAGAATATAAATTATTGAAGGTTGGTTATGTACAAGTCAATGTTTTATAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATAAATTATTGAAGGTTGGTTATGTACAAGTCAATGTTTTATAC  1136

seq1  CTTGAAGTAGTGAATTC  1166
      |||||||||||||||||
seq2  CTTGAAGTAGTGAATTC  1153

seq1: chr4_13227834_13229068
seq2: B6Ng01-009P17.g_69_1279

seq1  GAATTCATTGCCTACTTCAAAACTGTTGTTGGGTAGACGAAAAGTATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCCTACTTCAAAACTGTTGTTGGGTAGACGAAAAGTATTAA  50

seq1  AGGGAAACATTTGCCCAGAGAAATAGTTACGACAATTCACCTGGCTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACATTTGCCCAGAGAAATAGTTACGACAATTCACCTGGCTGTAG  100

seq1  CCAATATTTTCCATGTATTTACCATGGTCAGGGGTTCCTTGAGTTATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTTTCCATGTATTTACCATGGTCAGGGGTTCCTTGAGTTATTAC  150

seq1  ATCATATTTATAAAGCAAGCCCATAGGGTAACAGTTCCATTGTTACGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTTATAAAGCAAGCCCATAGGGTAACAGTTCCATTGTTACGATT  200

seq1  TTAAAATGGAAATTAAAAAAAAAAACAGAGATATTGGGATTTACAATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGGAAATTAAAAAAAAAAACAGAGATATTGGGATTTACAATTGC  250

seq1  AAATAAAAAAAGCATAGTCAGCACTAAGAGATTCAACTTTATTGTGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAAAGCATAGTCAGCACTAAGAGATTCAACTTTATTGTGACAT  300

seq1  GTTTCCCCGTAAGACTACTGTGTGCCACCCTCAGGCTTCTGAGCCAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCGTAAGACTACTGTGTGCCACCCTCAGGCTTCTGAGCCAATTG  350

seq1  TCCAAGCCACATTAGCTAAACTCCATAGCACCTACATTTATCAGCTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCCACATTAGCTAAACTCCATAGCACCTACATTTATCAGCTATGC  400

seq1  AGAATGGTTAACCTCTATCTTCTTGACAGAACGAAGAGGGAAAATGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTTAACCTCTATCTTCTTGACAGAACGAAGAGGGAAAATGTGGG  450

seq1  TAAGTTCACCAGAAGTTGCATATCCATTGTTAAATCTGTATTGAAAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCACCAGAAGTTGCATATCCATTGTTAAATCTGTATTGAAAGCAT  500

seq1  TGTACTGTTGGTTATGTATAGTTTCTGCTAGGATTAGGTACTTCAGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTTGGTTATGTATAGTTTCTGCTAGGATTAGGTACTTCAGTGGT  550

seq1  TCTTACCCTGTGGGTTCTTGACCCCTTTGACAAACCTGTTTCAAACGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCTGTGGGTTCTTGACCCCTTTGACAAACCTGTTTCAAACGTTA  600

seq1  TTTATATTACAATTCAAAACAGTAGCAAATTACAGTTATGAAGTAATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTACAATTCAAAACAGTAGCAAATTACAGTTATGAAGTAATAAC  650

seq1  AAAAGTAATTTCATTGTTGTGGGTTACCACGACATGAGAGATTATATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAATTTCATTGTTGTGGGTTACCACGACATGAGAGATTATATTAA  700

seq1  GAGGTTGAAACTTAGGAAGGTTGAGAACCACTGATCTAGTTCCTTGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGAAACTTAGGAAGGTTGAGAACCACTGATCTAGTTCCTTGCATA  750

seq1  ACAGAAAAGCCAAGCCACCATGCAATTTCACTAATCCTGATCATTAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGCCAAGCCACCATGCAATTTCACTAATCCTGATCATTAACTT  800

seq1  TATTTAAAATCTGGGATTTCACAATTTAAGAATTCCTTCTCCTATATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAATCTGGGATTTCACAATTTAAGAATTCCTTCTCCTATATTCT  850

seq1  TGATTTTACAGATAAAGAAAATTACCCACTGACCCCTGTCCTGGAGTCCA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGATTTTACAGATAAAGAAAATTACCCACTGACCCCTGT-CTGGAGTCCA  899

seq1  ACTGTCCCACAATACCAAACATGGTCTGGAATGCTACTGATTAAGTACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCACAATACCAAACATGGTCTGGAATGCTACTGATTAAGTACTG  949

seq1  ATTCAAAATTATATTTCTATACTAGATTGCTTCATTTCTATTTCTATGTC  1000
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  ATTCAAAATTATATTTCTATACTAGA-TGCTTCATTTCTA-TTCTATGTC  997

seq1  TTCTGATCTTACCTCTCTAAAGGATTTTGGGAAATATTGTAGCAGGCTGA  1050
       ||||||| |||||||||||  ||  |||||||||||||||||| |||||
seq2  -TCTGATC-TACCTCTCTAA--GA--TTGGGAAATATTGTAGCA-GCTGA  1040

seq1  C-TACCACCTCCAGCCTCTGTTATGAAGGCAAGCCTTCTAGTCTG-CTGA  1098
      | |||||||| ||| ||||| |||||| ||||||||||||||||| ||||
seq2  CTTACCACCT-CAG-CTCTG-TATGAA-GCAAGCCTTCTAGTCTGTCTGA  1086

seq1  TAAAGGGACAAACCCAGTACGGCTGTATTTCAAGATGAAGC-TACTAACT  1147
      | ||||||| ||||||| ||| ||   | |||||||| ||| |||| |||
seq2  TTAAGGGAC-AACCCAGAACGCCT---TATCAAGATGGAGCTTACTTACT  1132

seq1  TGGGCAACATAAAAGATCTGAACTAAAGATGATCATAAGCTTCATAGATG  1197
        ||| || |  |||||||| |||||   |||||   |||||| || |||
seq2  --GGC-ACTT--AAGATCTG-ACTAA--GTGATC--TAGCTTC-TATATG  1171

seq1  -ATCGTAAAAAAACCTCCAGTA-CCT-----GACATGGGTTATTG  1235
       ||||     |||||||||||| |||      |||| ||||||||
seq2  TATCG-----AAACCTCCAGTATCCTCGTGCCACATTGGTTATTG  1211