BAC Information

Click to search

BAC

Clone NameB6Ng01-010E24
Chromosome4 (Build37)4 (Build37)
Map Location 131,408,421 - 131,409,283140,252,424 - 140,253,253
singlet/doubletsingletsinglet
Overlap geneMecr
Upstream geneLaptm5, Matn1, LOC622681, LOC100041575, Gm831, EG664832, LOC100039799, Ptpru
Downstream geneSfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010E24.bB6Ng01-010E24.g
ACCDH846016DH846017
length904830
definitionDH846016|Mus musculus domesticus DNA, BAC clone: B6Ng01-010E24, 5' end.DH846017|Mus musculus domesticus DNA, BAC clone: B6Ng01-010E24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(131,408,421 - 131,409,283)(140,252,424 - 140,253,253)
sequence
gaattcactttgtagaccaggctggcctggaactcagaaatccgcctgcc
tctgcctcccgagtgctaggattaaaggtgtgcgccaccacgcccggctc
ttagtcagggtttctattcctgcacaaacatcaggaccaagaagcaagtt
gaggaggaaagggtttattcggcttacacttccatactgctgttcatcac
caaggaagtcaggactggaactcaagcaggtcagaaagcaggagccgatg
cagaggccatggagggatgttctttactggcttgcctcccctggcttgct
cagcctgctttcttatagaaccaagactacgagcccagagatggtcccac
ccacaaggggcctttcccccttgatcactaattgagaaaatgccttacag
ttggatctcatggaggcatttcctcaactgaagctcctgtctctgtgata
actccagctgtgtcaagttgacacaaaactagccagtacacgttccaagc
tggtatcagagcattatatacatctattaaccccgagtgtgtgtgtgtgt
gtgtgtgcacacgcgcgcgcgcgcatgcatgtgcatatgcagaccaaagg
ttgatgccggttcctgtattgatttctgccttagtttttgagatagggtc
tctcactgaagctctagcgaaccgttttggctagatgggtgagcccctgg
aacccgcttgtctctgtctcccagtgctgcagttacagacctatgctgct
gcgcccagcttttgtgtgggcgctggggatctgaactcaggtcctcatgc
ttgcaaacaagcacttccagccgctcactgtgcactgtagtcccttgttc
ccccaaatctctgtctgcccatgcctgcctcttcatgaggggattttgtg
cctg
gaattccatgactcactgtcagaaatagaacagttggttttttaaaaatt
aaattacttctatgtgtatggatgttttgcttgcatgtatatctgtgcac
cacctgctgtgcatttctggtgcctaaggaagccagaggaggtattggat
cccctaggactggagttaaagataataatgagccactatgtggatgctgg
gaatagaacccaggtcctctaaaagagcagtcagggatcttaacttctga
gcatctttccagatcctagaacagaatctttatctcttgactattaggac
agggatgctgggacccaccgatctgggtataaggaaatattaaattcaga
acgaactccagatccatgctgccattttacagacagaggaaatcagacag
gaagcagaactctttcttagttgcagattaaccaactggttttccagttg
ctcttgcaaaggcagtgttaggtctcaaagtcaggatggtaggctgagcg
agtttcagaacagccagggttacacagagaaaccctgtctgaaaaacaaa
gaaaaaaagaaaagaaaagaaaaaaaaagaaaagaagaaaagaaaagagg
aaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaagg
aaaggaaaggaaggaaggaaaggaaaggaaaggaaaggaaaggaaaggaa
ggaaggaaggaaggaagaagagccgggcatggtggcgcatgcctttatct
cagcacttgtgaggcagaggcatgcatatttctgagtcgagccagcctgg
tctataagtgagtccgtgacagccagggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_131408421_131409283
seq2: B6Ng01-010E24.b_49_536 (reverse)

seq1  TACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAC  50

seq1  AGGAGCTTCAGTTGAGGAAATGCCTCCACGAGATCCAGCTGTAAGGCATT  100
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  AGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATT  100

seq1  TTCTCAATTAGTGATCAAGGGGGGAAGGTCCCCTTGTGGGTGGTGCCATC  150
      ||||||||||||||||||||||| |||| ||||||||||||||  |||||
seq2  TTCTCAATTAGTGATCAAGGGGGAAAGG-CCCCTTGTGGGTGGGACCATC  149

seq1  TCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAG  200
      |||||||| |||||||| |||||||||||| |||||||||||||||||||
seq2  TCTGGGCTCGTAGTCTT-GGTTCTATAAGAAAGCAGGCTGAGCAAGCCAG  198

seq1  GGGAAGCAAGCCAGTAAAGAATATCCCTCCATGGCCTCTGCATCAGCTCC  250
      |||| |||||||||||||||| |||||||||||||||||||||| |||||
seq2  GGGAGGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCGGCTCC  248

seq1  TGCTTTCTGACCTGCTTGAGTTCCAGTCCTGATTTCCTTGGTGATGAACA  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCTTTCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAACA  298

seq1  ACAGTATGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTC  350
       |||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  GCAGTATGGAAGTGTAAGCCGAATAAACCCTTTCCTCCTCAACTTGCTTC  348

seq1  TTAGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAATAGCACTGG  400
      || ||| ||||||||||||||||||||||||||||||| || ||| | ||
seq2  TTGGTCCTGATGTTTGTGCAGGAATAGAAACCCTGACT-AAGAGC-CGGG  396

seq1  AAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAAAAAAAA  450
          ||    | ||   | ||||  | ||   |                |
seq2  ---CGTGGTGGCGC---ACACCT--TTAATCCT----------------A  422

seq1  GAAACCCTGACTAAGACGCCACCTGCACCTCCTTTCTAAGACCCCAGCCC  500
      | |  |  ||   ||| ||   | |       ||||| ||   |||| ||
seq2  GCACTCGGGAGGCAGAGGCAGGCGG------ATTTCTGAG-TTCCAGGCC  465

seq1  AGAAGGGCCATCTCCCTGGGGTGTGAGTCACGGTCAGCAGAGACACTTCA  550
      ||            |||              ||||  || ||  | ||| 
seq2  AG------------CCT--------------GGTCTACAAAGTGAATTC-  488

seq1  CAGATACAGAGGTTCTCTTTCTATCACCTCACTCTGCAGTAAGGGAAATA  600
                                                        
seq2  --------------------------------------------------  488

seq1  TCACCTTTGCCCATGTGTGTTGGAGCCAACAAAACAACACATGGACAGCG  650
                                                        
seq2  --------------------------------------------------  488

seq1  GACAGGGCTGACCCAGAGTTTCTCAGGTATGCTTCTTTGAAAGAACCACT  700
                                                        
seq2  --------------------------------------------------  488

seq1  TGGGGTCCCCTCACCTGGTGATGCTGGTTCACGCATCAGCAGCGGCTGTA  750
                                                        
seq2  --------------------------------------------------  488

seq1  TTAATAGTGAGTGCGGCCAGGCAGTGGTGGCACATGCCTTTAATCCCAGC  800
                                                        
seq2  --------------------------------------------------  488

seq1  ACTTGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAACCTGGTCT  850
                                                        
seq2  --------------------------------------------------  488

seq1  ACAGAGTGAATTC  863
                   
seq2  -------------  488

seq1: chr4_140252424_140253253
seq2: B6Ng01-010E24.g_70_899

seq1  GAATTCCATGACTCACTGTCAGAAATAGAACAGTTGGTTTTTTAAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACTCACTGTCAGAAATAGAACAGTTGGTTTTTTAAAAATT  50

seq1  AAATTACTTCTATGTGTATGGATGTTTTGCTTGCATGTATATCTGTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTCTATGTGTATGGATGTTTTGCTTGCATGTATATCTGTGCAC  100

seq1  CACCTGCTGTGCATTTCTGGTGCCTAAGGAAGCCAGAGGAGGTATTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTGTGCATTTCTGGTGCCTAAGGAAGCCAGAGGAGGTATTGGAT  150

seq1  CCCCTAGGACTGGAGTTAAAGATAATAATGAGCCACTATGTGGATGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGGACTGGAGTTAAAGATAATAATGAGCCACTATGTGGATGCTGG  200

seq1  GAATAGAACCCAGGTCCTCTAAAAGAGCAGTCAGGGATCTTAACTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAACCCAGGTCCTCTAAAAGAGCAGTCAGGGATCTTAACTTCTGA  250

seq1  GCATCTTTCCAGATCCTAGAACAGAATCTTTATCTCTTGACTATTAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTCCAGATCCTAGAACAGAATCTTTATCTCTTGACTATTAGGAC  300

seq1  AGGGATGCTGGGACCCACCGATCTGGGTATAAGGAAATATTAAATTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGCTGGGACCCACCGATCTGGGTATAAGGAAATATTAAATTCAGA  350

seq1  ACGAACTCCAGATCCATGCTGCCATTTTACAGACAGAGGAAATCAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACTCCAGATCCATGCTGCCATTTTACAGACAGAGGAAATCAGACAG  400

seq1  GAAGCAGAACTCTTTCTTAGTTGCAGATTAACCAACTGGTTTTCCAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAACTCTTTCTTAGTTGCAGATTAACCAACTGGTTTTCCAGTTG  450

seq1  CTCTTGCAAAGGCAGTGTTAGGTCTCAAAGTCAGGATGGTAGGCTGAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCAAAGGCAGTGTTAGGTCTCAAAGTCAGGATGGTAGGCTGAGCG  500

seq1  AGTTTCAGAACAGCCAGGGTTACACAGAGAAACCCTGTCTGAAAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAACAGCCAGGGTTACACAGAGAAACCCTGTCTGAAAAACAAA  550

seq1  GAAAAAAAGAAAAGAAAAGAAAAAAAAAGAAAAGAAGAAAAGAAAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGAAAAGAAAAGAAAAAAAAAGAAAAGAAGAAAAGAAAAGAGG  600

seq1  AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGG  650

seq1  AAAGGAAAGGA---AAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAA  697
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGGAAGGAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAA  700

seq1  --AGGAAAGGAAAGGAAAGGAGCCGGGCATGGTGGCGCATGCCTTTAATC  745
        | | |||||| | | | ||||||||||||||||||||||||||| |||
seq2  GGAAGGAAGGAAGGAAGAAGAGCCGGGCATGGTGGCGCATGCCTTT-ATC  749

seq1  CCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCC  795
       ||||||||| |||||||||||| ||| ||||||||| |||| |||||||
seq2  TCAGCACTTGTGAGGCAGAGGCATGCATATTTCTGAG-TCGA-GCCAGCC  797

seq1  TGGTCTATAAAGTGAGTTCCAGGACAGCCAGGGCT  830
      |||||||| ||||||| |||  |||||||||||||
seq2  TGGTCTAT-AAGTGAG-TCCGTGACAGCCAGGGCT  830