BAC Information

Click to search

BAC

Clone NameB6Ng01-010L04
Chromosome4 (Build37)
Map Location 62,284,613 - 62,438,352
singlet/doubletdoublet
Overlap geneRgs3
Upstream geneLOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik
Downstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010L04.bB6Ng01-010L04.g
ACCDH846290DH846291
length5311,104
definitionDH846290|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L04, 5' end.DH846291|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,284,613 - 62,285,149)(62,437,237 - 62,438,352)
sequence
cagacggctcttgggtaaagggttggggctgttaggaccaagaggaaaac
gggtttcccttttccttgatctcatccattctgctctctgcttgactttg
cataagtcagggttaagatggtgggtcagagataggtagaggaggctggc
tgactccttctcagctctgactccctgtggagaggaaggtggctctgggt
ggagcttagaggcttcccagttttgaaactctggagtaactggacaaggt
tatgtcctagatcaccatccggaggggcaaagacggctttggcttcacca
tctgctgtgactctccggtccgagtccaggctgtggattctggtaagtga
atggcctaggatggcagcctcaccctcctgccaggcagctggactttgct
gtttggagctggacagggcctcacactggatcagactctgggttttcaaa
ggaaaaagaataatatttttaaatgacctacagatgaatctgaggtttat
gaaaatagagccttttttgggggggggaggg
gaattcctgggatccagcaagcataggtagtatagtcagacttatcagcc
ttggttgaggtccattaggatgtcaaatgctccgagaaatcctgcagaat
ggagaactcgtcaaccttcctactagattgccaggtccaagcagagaata
cggtcactaccgtgctcatagcagtcctcaggatgaagttcacccggagg
gactggccacatctcctgataggagacctggcaaggatacagcatttcca
gttataccaatcattaacatagcaacggtaagtcaagggtcacaagattc
cccatgagggacgaaaaaggatgtggtaaataaactggcaggccttaaag
gtcgcagagagtttgtgctggtagctattctcccactgagtcactgagac
atcaccctaaaccctcactgagaagaggacgtgaacacattggggtgccc
tggagagcctgggcctagcccgagagactagatacacacccctcaccccc
actcctaaccctgtcgctgaggcgtcactgaagaaaacaacattagttat
tgtgtatattaactggcatttgaagccacctgaaagggcctgtcctagtt
agggtttctacggctgtggtcaaatgcaccttgaggagggaagggtttgt
ttctcttacatttccaggcaacagtccatctctgagggaagtcaggacag
aaacctggagtcaggagctgaagcagaggccatggagggatgctacttac
tggcttgctccccatggctccctcagcccaatttttataccatccagggc
catctgcccatgggcagcacctcccacaattggctgggacctcctagatc
catctttaagcaagaaaatacccccacagacttgcctacagatcaatctg
tcttcattgaaattcgtctcctagatatgtctagattgtgtcaagttggc
aaagccaccagcacagtgcctcccagtacattctggggaagagacacagg
ctctcctcatgggaccctcatctgtctctgtctatggggtcactcattgc
acactggagagcacattcagctgcctgaacttctcaaagaacattgccac
agca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_62284613_62285149
seq2: B6Ng01-010L04.b_49_585

seq1  GAATTCCAGACGGCTCTTGGGTAAAGGGTTGGGGCTGTTAGGACCAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACGGCTCTTGGGTAAAGGGTTGGGGCTGTTAGGACCAAGAG  50

seq1  GAAAACGGGTTTCCCTTTTCCTTGATCTCATCCATTCTGCTCTCTGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGGGTTTCCCTTTTCCTTGATCTCATCCATTCTGCTCTCTGCTTG  100

seq1  ACTTTGCATAAGTCAGGGTTAAGATGGTGGGTCAGAGATAGGTAGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCATAAGTCAGGGTTAAGATGGTGGGTCAGAGATAGGTAGAGGAG  150

seq1  GCTGGCTGACTCCTTCTCAGCTCTGACTCCCTGTGGAGAGGAAGGTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGACTCCTTCTCAGCTCTGACTCCCTGTGGAGAGGAAGGTGGCT  200

seq1  CTGGGTGGAGCTTAGAGGCTTCCCAGTTTTGAAACTCTGGAGTAACTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGAGCTTAGAGGCTTCCCAGTTTTGAAACTCTGGAGTAACTGGA  250

seq1  CAAGGTTATGTCCTAGATCACCATCCGGAGGGGCAAAGACGGCTTTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTATGTCCTAGATCACCATCCGGAGGGGCAAAGACGGCTTTGGCT  300

seq1  TCACCATCTGCTGTGACTCTCCGGTCCGAGTCCAGGCTGTGGATTCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCTGCTGTGACTCTCCGGTCCGAGTCCAGGCTGTGGATTCTGGT  350

seq1  AAGTGAATGGCCTAGGATGGCAGCCTCACCCTCCTGCCAGGCAGCTGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATGGCCTAGGATGGCAGCCTCACCCTCCTGCCAGGCAGCTGGAC  400

seq1  TTTGCTGTTTGGAGCTGGACAGGGCCTCACACTGGATCAGACTCTGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTTTGGAGCTGGACAGGGCCTCACACTGGATCAGACTCTGGGTT  450

seq1  TTCAAAGGAAAAAGAATAATATTTTTAAATGACCTACAGATGAATCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGAAAAAGAATAATATTTTTAAATGACCTACAGATGAATCTGAG  500

seq1  GTTTATGAAAATAGAGCCTTTTTTGGGGGGGGGAGGG  537
      |||||||||||||||||||||||||||||||||||||
seq2  GTTTATGAAAATAGAGCCTTTTTTGGGGGGGGGAGGG  537

seq1: chr4_62437237_62438352
seq2: B6Ng01-010L04.g_64_1167 (reverse)

seq1  TGCTGTGGCAATTGTTTCTTCTGAGAAAGTTCAGGGCAGCTGAATGTGGC  50
      ||||||||||||   ||||| |||| ||||||| ||||||||||||| ||
seq2  TGCTGTGGCAAT--GTTCTT-TGAG-AAGTTCA-GGCAGCTGAATGT-GC  44

seq1  TCTCAAGTTGTGC-ATGAGTGACCCCATTAGACAGGAGGACAGATGAAGG  99
      |||| || ||||| ||||||||||||| |||||||   |||||||| |||
seq2  TCTCCAG-TGTGCAATGAGTGACCCCA-TAGACAG--AGACAGATG-AGG  89

seq1  GTCCCATGAGAGGAGCCTGTGTCTCTTCCCCAGAATGTACTGGGAGGCAC  149
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGAGGAGAGCCTGTGTCTCTTCCCCAGAATGTACTGGGAGGCAC  139

seq1  TGTGCTGGTTGGCTTTGCCAACTTGACACAAATCTAGACATATCTAGGAG  199
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  TGTGCTGG-TGGCTTTGCCAACTTGACAC-AATCTAGACATATCTAGGAG  187

seq1  ACGAATTTCAATGAAGACAGATTGATCTGTAGGCAAGTCTGTGGGGGTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATTTCAATGAAGACAGATTGATCTGTAGGCAAGTCTGTGGGGGTAT  237

seq1  TTTCTTGCTTAAAGATGGATCTAGGAGGTCCCAGCCAATTGTGGGAGGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCTTAAAGATGGATCTAGGAGGTCCCAGCCAATTGTGGGAGGTG  287

seq1  CTGCCCATGGGCAGATGGCCCTGGATGGTATAAAAATTGGGCTGAGGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCATGGGCAGATGGCCCTGGATGGTATAAAAATTGGGCTGAGGGAG  337

seq1  CCATGGGGAGCAAGCCAGTAAGTAGCATCCCTCCATGGCCTCTGCTTCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGGAGCAAGCCAGTAAGTAGCATCCCTCCATGGCCTCTGCTTCAG  387

seq1  CTCCTGACTCCAGGTTTCTGTCCTGACTTCCCTCAGAGATGGACTGTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACTCCAGGTTTCTGTCCTGACTTCCCTCAGAGATGGACTGTTGC  437

seq1  CTGGAAATGTAAGAGAAACAAACCCTTCCCTCCTCAAGGTGCATTTGACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATGTAAGAGAAACAAACCCTTCCCTCCTCAAGGTGCATTTGACC  487

seq1  ACAGCCGTAGAAACCCTAACTAGGACAGGCCCTTTCAGGTGGCTTCAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCGTAGAAACCCTAACTAGGACAGGCCCTTTCAGGTGGCTTCAAAT  537

seq1  GCCAGTTAATATACACAATAACTAATGTTGTTTTCTTCAGTGACGCCTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTAATATACACAATAACTAATGTTGTTTTCTTCAGTGACGCCTCA  587

seq1  GCGACAGGGTTAGGAGTGGGGGTGAGGGGTGTGTATCTAGTCTCTCGGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACAGGGTTAGGAGTGGGGGTGAGGGGTGTGTATCTAGTCTCTCGGGC  637

seq1  TAGGCCCAGGCTCTCCAGGGCACCCCAATGTGTTCACGTCCTCTTCTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCAGGCTCTCCAGGGCACCCCAATGTGTTCACGTCCTCTTCTCAG  687

seq1  TGAGGGTTTAGGGTGATGTCTCAGTGACTCAGTGGGAGAATAGCTACCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTTAGGGTGATGTCTCAGTGACTCAGTGGGAGAATAGCTACCAG  737

seq1  CACAAACTCTCTGCGACCTTTAAGGCCTGCCAGTTTATTTACCACATCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACTCTCTGCGACCTTTAAGGCCTGCCAGTTTATTTACCACATCCT  787

seq1  TTTTCGTCCCTCATGGGGAATCTTGTGACCCTTGACTTACCGTTGCTATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGTCCCTCATGGGGAATCTTGTGACCCTTGACTTACCGTTGCTATG  837

seq1  TTAATGATTGGTATAACTGGAAATGCTGTATCCTTGCCAGGTCTCCTATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATTGGTATAACTGGAAATGCTGTATCCTTGCCAGGTCTCCTATC  887

seq1  AGGAGATGTGGCCAGTCCCTCCGGGTGAACTTCATCCTGAGGACTGCTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGTGGCCAGTCCCTCCGGGTGAACTTCATCCTGAGGACTGCTAT  937

seq1  GAGCACGGTAGTGACCGTATTCTCTGCTTGGACCTGGCAATCTAGTAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACGGTAGTGACCGTATTCTCTGCTTGGACCTGGCAATCTAGTAGGA  987

seq1  AGGTTGACGAGTTCTCCATTCTGCAGGATTTCTCGGAGCATTTGACATCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGACGAGTTCTCCATTCTGCAGGATTTCTCGGAGCATTTGACATCC  1037

seq1  TAATGGACCTCAACCAAGGCTGATAAGTCTGACTATACTACCTATGCTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGACCTCAACCAAGGCTGATAAGTCTGACTATACTACCTATGCTTG  1087

seq1  CTGGATCCCAGGAATTC  1116
      |||||||||||||||||
seq2  CTGGATCCCAGGAATTC  1104