BAC Information

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BAC

Clone NameB6Ng01-010N02
Chromosome4 (Build37)
Map Location 35,824,295 - 35,981,832
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream geneLOC100042132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010N02.bB6Ng01-010N02.g
ACCDH846378DH846379
length2451,189
definitionDH846378|Mus musculus domesticus DNA, BAC clone: B6Ng01-010N02, 5' end.DH846379|Mus musculus domesticus DNA, BAC clone: B6Ng01-010N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,824,295 - 35,824,541)(35,980,637 - 35,981,832)
sequence
gaattcatttacaaagtctgtatttcctaaaattgaaacttgcctgaagc
aaaagaacctttgcaagatgttacagacaggaagggagggcaagcagatc
agcaattttattttaaatatgctatatatgtttaattagtttcatagtta
ggatcactgtgagagaatgtgtctgggaaggcaacgggaatgttgattct
ctctctctctctctctctctctctctctctctctctctctctctc
gaattcttaacaagccagaacttagaaagcatctgaaaagatttgctaag
tgtttcacatatttttaaaaagaaggctgagttttagtgttttttacact
atgtttatcttaatcacattcatcagagactagccattcaaatatgaaaa
aaaaaatactctggtggtagaacggtgtgtctttctaccttctaactcta
atgtggacttctaacatttatccttttccctctggttgtgaatgtggatc
cggtgataagaaagggaagctgctggttctggagaacaaattcagggctg
tggaaagaggtgctgctgcactggaggcttacatttatacccacttatgc
tatcattttactttgttcttttaacaatcaaatctagttctatttgaatg
tttttcagctctgatgaggttcaaacctgcagtgccgtgcatgctaggca
aatgtcctaccaatgacctctaggtacttcccagtccttgtgcctttttc
aactctgaaaaaatcttgaacagcagaaagattccaaagatagtgcaagg
aatttctgtgttaccttcatccagaattagtctttgtttaaaatctgtgt
tctttgctctatttctcagtttaattttcccaaatgtatttcacaataag
ttccatgtgtcatgtctctccattctctgatgttttcaagtgcatttggt
aaaagcaagaatatttcctaacataaatatcgtccatttgttaaatttca
tcaaaacttcttacctcttctgtaatccatgatgaattttgtcagttgtc
tcactcatatgatggacagagcagacgccaatctagtcttaagtcattat
ttcttttaccatattagaactttaattcataggaagatatggaaagatat
tttagatatttataaagggcccatgagtacattagatctatgagtgtctt
ttaattctcatagagacatgattgtgaagtagtaatatccattaatgttc
ttttgaagactcatctcattgattttgtttatacatgtgtgttatagagt
gtattccacaaaatgatttctaatcagtgaggactacataaatgatgccg
actcctaacgaataatttgctggtatatattgcacgtccttaattggtgt
gtaccgaactagatgggagttaaccatgatgaacttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35824295_35824541
seq2: B6Ng01-010N02.b_44_288

seq1  GAATTCATTTACAAAGTCTGTATTTCCTAAAATTGAAACTTGCCTGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACAAAGTCTGTATTTCCTAAAATTGAAACTTGCCTGAAGC  50

seq1  AAAAGAACCTTTGCAAGATGTTACAGACAGGAAGGGAGGGCAAGCAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACCTTTGCAAGATGTTACAGACAGGAAGGGAGGGCAAGCAGATC  100

seq1  AGCAATTTTATTTTAAATATGCTATATATGTTTAATTAGTTTCATAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTTATTTTAAATATGCTATATATGTTTAATTAGTTTCATAGTTA  150

seq1  GGATCACTGTGAGAGAATGTGTCTGGGAAGGCAACGGGAATGTTGATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACTGTGAGAGAATGTGTCTGGGAAGGCAACGGGAATGTTGATTCT  200

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTC  247
      |||||||||||||||||||||||||||||||||||||| ||||||  
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC--  245

seq1: chr4_35980637_35981832
seq2: B6Ng01-010N02.g_64_1252 (reverse)

seq1  AGCAAGTTCATCATGGTGTAAACATCCCACAATGTTCTG---ACACAAAC  47
      ||||||||||||||||| |||   |||||    |||| |   |||| || 
seq2  AGCAAGTTCATCATGGT-TAA--CTCCCATCTAGTTCGGTACACACCAAT  47

seq1  TAAGACAGCTGCAATAT-TACCAGGCAATATATTC-CTATGAGATCAGCA  95
      ||||  |  |||||||| ||||| ||||  |||||  || ||| || |||
seq2  TAAG-GACGTGCAATATATACCA-GCAAATTATTCGTTAGGAG-TCGGCA  94

seq1  TCATTTATGTAGTCCTCACTGATTAGAGATCATTTTTGTGGAATACAACT  145
      ||||||||||||||||||||||||||| |||| ||||||||||||| |||
seq2  TCATTTATGTAGTCCTCACTGATTAGAAATCA-TTTTGTGGAATAC-ACT  142

seq1  CTATAAACACACATGTATAAACAAAATCAATGGAGATGGAGTTCTC-AGA  194
      |||| |||||||||||||||||||||||||| ||||| ||||  || | |
seq2  CTAT-AACACACATGTATAAACAAAATCAAT-GAGAT-GAGTCTTCAAAA  189

seq1  GAACATTAATGGATA-TACTACTTCACAATCATGTCTCTTATGAGAATTA  243
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  GAACATTAATGGATATTACTACTTCACAATCATGTCTC-TATGAGAATTA  238

seq1  AAAGACACTCAATAGATCTAATGTACTCATGGGCCCTTTATAAATATCTA  293
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACTC-ATAGATCTAATGTACTCATGGGCCCTTTATAAATATCTA  287

seq1  AAATTATCTTTCCATATCTTCCTATGAATTAAAGTTCTAATATGGTAAAA  343
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAA-TATCTTTCCATATCTTCCTATGAATTAAAGTTCTAATATGGTAAAA  336

seq1  GAAATAATGACTTAAGACTAGATTGGCGTCTGCTCTGTCCATCATATGAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATGACTTAAGACTAGATTGGCGTCTGCTCTGTCCATCATATGAG  386

seq1  TGAGACAACTGACAAAATTCATCATGGATTACAGAAGAGGTAAGAAGTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAACTGACAAAATTCATCATGGATTACAGAAGAGGTAAGAAGTTT  436

seq1  TGATGAAATTTAACAAATGGACGATATTTATGTTAGGAAATATTCTTGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAATTTAACAAATGGACGATATTTATGTTAGGAAATATTCTTGCT  486

seq1  TTTACCAAATGCACTTGAAAACATCAGAGAATGGAGAGACATGACACATG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAATGCACTTGAAAACATCAGAGAATGGAGAGACATGACACATG  536

seq1  GAACTTATTGTGAAATACATTTGGGAAAATTAAACTGAGAAATAGAGCAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTATTGTGAAATACATTTGGGAAAATTAAACTGAGAAATAGAGCAA  586

seq1  AGAACACAGATTTTAAACAAAGACTAATTCTGGATGAAGGTAACACAGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAGATTTTAAACAAAGACTAATTCTGGATGAAGGTAACACAGAA  636

seq1  ATTCCTTGCACTATCTTTGGAATCTTTCTGCTGTTCAAGATTTTTTCAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGCACTATCTTTGGAATCTTTCTGCTGTTCAAGATTTTTTCAGA  686

seq1  GTTGAAAAAGGCACAAGGACTGGGAAGTACCTAGAGGTCATTGGTAGGAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAAAGGCACAAGGACTGGGAAGTACCTAGAGGTCATTGGTAGGAC  736

seq1  ATTTGCCTAGCATGCACGGCACTGCAGGTTTGAACCTCATCAGAGCTGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTAGCATGCACGGCACTGCAGGTTTGAACCTCATCAGAGCTGAA  786

seq1  AAACATTCAAATAGAACTAGATTTGATTGTTAAAAGAACAAAGTAAAATG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCAAATAGAACTAGATTTGATTGTTAAAAGAACAAAGTAAAATG  836

seq1  ATAGCATAAGTGGGTATAAATGTAAGCCTCCAGTGCAGCAGCACCTCTTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATAAGTGGGTATAAATGTAAGCCTCCAGTGCAGCAGCACCTCTTT  886

seq1  CCACAGCCCTGAATTTGTTCTCCAGAACCAGCAGCTTCCCTTTCTTATCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCCTGAATTTGTTCTCCAGAACCAGCAGCTTCCCTTTCTTATCA  936

seq1  CCGGATCCACATTCACAACCAGAGGGAAAAGGATAAATGTTAGAAGTCCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATCCACATTCACAACCAGAGGGAAAAGGATAAATGTTAGAAGTCCA  986

seq1  CATTAGAGTTAGAAGGTAGAAAGACACACCGTTCTACCACCAGAGTATTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAGTTAGAAGGTAGAAAGACACACCGTTCTACCACCAGAGTATTT  1036

seq1  TTTTTTTCATATTTGAATGGCTAGTCTCTGATGAATGTGATTAAGATAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCATATTTGAATGGCTAGTCTCTGATGAATGTGATTAAGATAAA  1086

seq1  CATAGTGTAAAAAACACTAAAACTCAGCCTTCTTTTTAAAAATATGTGAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGTAAAAAACACTAAAACTCAGCCTTCTTTTTAAAAATATGTGAA  1136

seq1  ACACTTAGCAAATCTTTTCAGATGCTTTCTAAGTTCTGGCTTGTTAAGAA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAGCAAATCTTTTCAGATGCTTTCTAAGTTCTGGCTTGTTAAGAA  1186

seq1  TTC  1196
      |||
seq2  TTC  1189