BAC Information

Click to search

BAC

Clone NameB6Ng01-010P03
Chromosome4 (Build37)
Map Location 34,740,310 - 34,844,637
singlet/doubletdoublet
Overlap geneZfp292, Cga
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik
Downstream geneMobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010P03.bB6Ng01-010P03.g
ACCDH846468DH846469
length1,0561,082
definitionDH846468|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P03, 5' end.DH846469|Mus musculus domesticus DNA, BAC clone: B6Ng01-010P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,740,310 - 34,741,386)(34,843,541 - 34,844,637)
sequence
gaattctttagtcactgcccacaaaaagaattgaaatctgtttcagtatt
ttttttttttggtttggtttggtttttttcaagacagggtttctctgtgt
agccctggctgtcctggaactcactctgtagaccaggctggcctcagact
cagaaatctgcctgcctctgcctcccgagtgctgggattaaaggcgtggg
ctaccacgcccggtcagtatttttgcttactgctccaatgcactgactct
gaacgagctacctacccagatacatacttggttagtaaaaagggaaaaca
aaaaggtaggttggtcccagggatgcaggctttaagtcccccttcccatt
tttaaagcattgcatcagtaccatcatagggccttacacatttctatcag
tgggcatccctaagtcctaggttactgcttaaaattcaaatttcagatta
ttctcttcactaccagggatatcagatttggagaatggtgggagaaggga
aagcccagtaacagacctgaagttcagtgtcagggggagccttgcagtca
ccacggagttcatcagatccttccgttcctttgcttctgggagaacagca
tttgccttttatgtcactgactcaattactttgtcttggagctaacgtgg
catcaagatttttttttttttttggaaaaaaaatcaattcagttgttcat
tttacacaaataacagagctcccaccccccaaaaaaaatcccttgaaatt
taagagtgcatattacatgtgacttaacttctaattttgtctgatttgtc
aaaataagggtgcttcattgtttgacatatttcaaaggaaacaaaaactt
tccccatgtgactgtgaccaagcagtacaataaaatctgagccaggattt
gtagatttgctactgtaaatcagtaataacatgcatgtcatcatttaatt
ttttagttgtatatctaaacttagaattttactattaaaaatattattac
aaactcctataggttttttgtgttgtgttgtacaagttcctctatgtaca
gccctg
gaattctactaagtaatcctagcactcaagaagcagaaggagacagatcc
aggctagccagagctacagtgtgaggctatctttaaaaaccatctattag
gaacaaaactgtagataacattaatttctctcagaagactaaagcatcca
aaagccaggaaatagagagcctaatgacgcaattgtcaggaggctgaagt
agaaggttctgcagttcaaggcacacttagaacttagtgaaaatctgtct
ctaaatgaacagcagagacagctgcagatatggctcagtgatcgagacgt
ccactgccagctcttacgaggcttccactccacatccaattaccaccaaa
ttcttttaaagtccagaaattgtctatggggacaacattagagaaatata
agaagctctctaatagcaccttacatttatgcattactttttttttagct
gacgtaatgtcaccttttgaaccaagaagcatctcatttaaagtactaag
aagagtttaaaaaaaaacaaaaagtatagttcagtgataaagcatatacc
taacatgcaggaggtcctgggttcagtctcctgaacttagtacctgtagc
tacctggtagaaagcttacagagcacggcagcagtggtgggaagcagcaa
aggctaagactgcggttcatgctggcctgaacactgataaggtcctgagt
tcaattcccagtacatttagtttgcaagattttcagtactaggaggaagg
gggctgcattgtgaattatttagcccctgttggaaatagaaagcagagat
aggagcttgggaaactcagaggcaaactcaactagctgggcattggtagc
aatgaacagtcaggcccaaggcttctctctgatcttcactctcacactgg
ggcgtatgtgtgcccctcacacaaagaaatacataactaataaaaggtaa
aagctaaactgaaacagcaatgaaactcacacacacaatcttcagaagga
tgactattttgacatttgaaaatagtccaggacagcatatggctcagtga
ataacgagttgtggctaatctggcactcgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34740310_34741386
seq2: B6Ng01-010P03.b_46_1101

seq1  GAATTCTTTAGTCACTGCCCACAAAAAGAATTGAAATCTGTTTCAGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTCACTGCCCACAAAAAGAATTGAAATCTGTTTCAGTATT  50

seq1  TTTTTTTTTTGGTTTGGTTTGGTTTTTTTCAAGACAGGGTTTCTCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGGTTTGGTTTGGTTTTTTTCAAGACAGGGTTTCTCTGTGT  100

seq1  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAGACT  150

seq1  CAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGGG  200

seq1  CTACCACGCCCGGTCAGTATTTTTGCTTACTGCTCCAATGCACTGACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACGCCCGGTCAGTATTTTTGCTTACTGCTCCAATGCACTGACTCT  250

seq1  GAACGAGCTACCTACCCAGATACATACTTGGTTAGTAAAAAGGGAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAGCTACCTACCCAGATACATACTTGGTTAGTAAAAAGGGAAAACA  300

seq1  AAAAGGTAGGTTGGTCCCAGGGATGCAGGCTTTAAGTCCCCCTTCCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTAGGTTGGTCCCAGGGATGCAGGCTTTAAGTCCCCCTTCCCATT  350

seq1  TTTAAAGCATTGCATCAGTACCATCATAGGGCCTTACACATTTCTATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCATTGCATCAGTACCATCATAGGGCCTTACACATTTCTATCAG  400

seq1  TGGGCATCCCTAAGTCCTAGGTTACTGCTTAAAATTCAAATTTCAGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCCCTAAGTCCTAGGTTACTGCTTAAAATTCAAATTTCAGATTA  450

seq1  TTCTCTTCACTACCAGGGATATCAGATTTGGAGAATGGTGGGAGAAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCACTACCAGGGATATCAGATTTGGAGAATGGTGGGAGAAGGGA  500

seq1  AAGCCCAGTAACAGACCTGAAGTTCAGTGTCAGGGGGAGCCTTGCAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGTAACAGACCTGAAGTTCAGTGTCAGGGGGAGCCTTGCAGTCA  550

seq1  CCACGGAGTTCATCAGATCCTTCCGTTCCTTTGCTTCTGGGAGAACAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGAGTTCATCAGATCCTTCCGTTCCTTTGCTTCTGGGAGAACAGCA  600

seq1  TTTGCCTTTTATGTCACTGACTCAATTACTTTGTCTTGGAGCTAACGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTTTATGTCACTGACTCAATTACTTTGTCTTGGAGCTAACGTGG  650

seq1  CATCAAGATTTTTTTTTTTTTTTGGAAAAAAAATCAATTCAGTTGTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGATTTTTTTTTTTTTTTGGAAAAAAAATCAATTCAGTTGTTCAT  700

seq1  TTTACACAAATAACAGAGCTCCCACCCCCCAAAAAAAATCCCTTGAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAAATAACAGAGCTCCCACCCCCCAAAAAAAATCCCTTGAAATT  750

seq1  TAAGAGTGCATATTACATGTGACTTAACTTCTAATTTTGTCTGATTTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGCATATTACATGTGACTTAACTTCTAATTTTGTCTGATTTGTC  800

seq1  AAAATAAGGGTGCTTCATTGTTTGACATATTTCAAAGGAAACAAAAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGGGTGCTTCATTGTTTGACATATTTCAAAGGAAACAAAAACTT  850

seq1  TCCCCATGTGACTGTGACCAAGCAGTACAATAAAATCTGAGCCAGGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGTGACTGTGACCAAGCAGTACAATAAAATCTGAGCCAGGATTT  900

seq1  GTAGATTTGCTACTGTAAATCAGTAATAACATGCATGTCATCATTTTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTAGATTTGCTACTGTAAATCAGTAATAACATGCATGTCATCA-TTTAAT  949

seq1  TTTTTTAAGTTGTATATCTAAACTTAGAATTTTTACTATTAAAAATATTA  1000
      |||||  |||||||||||||||||||||| ||||||||||||||||||| 
seq2  TTTTT--AGTTGTATATCTAAACTTAGAA-TTTTACTATTAAAAATATT-  995

seq1  ATTACAAAAACTTCCTATAGTGTTTTTTTTTTGTTGTTGTTGTTTTGTTA  1050
      ||||||||    |||||||| |||||||         |||||| ||||  
seq2  ATTACAAA---CTCCTATAG-GTTTTTT--------GTGTTGTGTTGT--  1031

seq1  ACAAGGTTTCTCTATGTAACAGCCCTG  1077
      |||| ||| |||||||| |||||||||
seq2  ACAA-GTTCCTCTATGT-ACAGCCCTG  1056

seq1: chr4_34843541_34844637
seq2: B6Ng01-010P03.g_63_1144 (reverse)

seq1  ACTCGGGGTGCCAGGATTTAGCCACAAACTCCCTTATTCACTGAGCCATA  50
      |||| | |||||||   |||||||| |||| | |||||||||||||||||
seq2  ACTC-GAGTGCCAG--ATTAGCCAC-AACT-CGTTATTCACTGAGCCATA  45

seq1  TGGCTGTCCCTTGGACTATTTTCAAAATGTCAAAAATAGTCATCCCTTCT  100
      | |||||||  |||||||||||| ||||||| ||||||||||| ||||||
seq2  T-GCTGTCC--TGGACTATTTTC-AAATGTC-AAAATAGTCAT-CCTTCT  89

seq1  GAAAGGTTTGTGTGTGTGAGTTTCATTGCTGTTTCAGTTTTAGCTTTTAA  150
      |||  | |||||||||||||||||||||||||||||| |||||||||| |
seq2  GAA--GATTGTGTGTGTGAGTTTCATTGCTGTTTCAG-TTTAGCTTTT-A  135

seq1  CCTTTTATTAGTTATGTATTTCTTTGTGTG-GGGGCACACATACGCCCCA  199
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTTTTATTAGTTATGTATTTCTTTGTGTGAGGGGCACACATACGCCCCA  185

seq1  GTGTGAGAGTGAAGGTCAGAGGGAAGCCTTGGGCCCTGACTGTTCATTGC  249
      |||||||||||||| |||||| ||||||||||| ||||||||||||||||
seq2  GTGTGAGAGTGAAGATCAGAGAGAAGCCTTGGG-CCTGACTGTTCATTGC  234

seq1  TACCAATGCCCAGCTAGTTGAGTTTGCCTCTGAGTTTCCCAAGCTCCTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATGCCCAGCTAGTTGAGTTTGCCTCTGAGTTTCCCAAGCTCCTAT  284

seq1  CTCTGCTTTCTATTTCCAACAGGGGCTAAATAATTCACAATGCAGCCCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTTCTATTTCCAACAGGGGCTAAATAATTCACAATGCAGCCCCC  334

seq1  TTCCTCCTAGTACTGAAAATCTTGCAAACTAAATGTACTGGGAATTGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTAGTACTGAAAATCTTGCAAACTAAATGTACTGGGAATTGAAC  384

seq1  TCAGGACCTTATCAGTGTTCAGGCCAGCATGAACCGCAGTCTTAGCCTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTTATCAGTGTTCAGGCCAGCATGAACCGCAGTCTTAGCCTTT  434

seq1  GCTGCTTCCCACCACTGCTGCCGTGCTCTGTAAGCTTTCTACCAGGTAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCCCACCACTGCTGCCGTGCTCTGTAAGCTTTCTACCAGGTAGC  484

seq1  TACAGGTACTAAGTTCAGGAGACTGAACCCAGGACCTCCTGCATGTTAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTACTAAGTTCAGGAGACTGAACCCAGGACCTCCTGCATGTTAGG  534

seq1  TATATGCTTTATCACTGAACTATACTTTTTGTTTTTTTTTAAACTCTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTTTATCACTGAACTATACTTTTTGTTTTTTTTTAAACTCTTCT  584

seq1  TAGTACTTTAAATGAGATGCTTCTTGGTTCAAAAGGTGACATTACGTCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTTAAATGAGATGCTTCTTGGTTCAAAAGGTGACATTACGTCAG  634

seq1  CTAAAAAAAAAGTAATGCATAAATGTAAGGTGCTATTAGAGAGCTTCTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAAAAGTAATGCATAAATGTAAGGTGCTATTAGAGAGCTTCTTA  684

seq1  TATTTCTCTAATGTTGTCCCCATAGACAATTTCTGGACTTTAAAAGAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCTAATGTTGTCCCCATAGACAATTTCTGGACTTTAAAAGAATT  734

seq1  TGGTGGTAATTGGATGTGGAGTGGAAGCCTCGTAAGAGCTGGCAGTGGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTAATTGGATGTGGAGTGGAAGCCTCGTAAGAGCTGGCAGTGGAC  784

seq1  GTCTCGATCACTGAGCCATATCTGCAGCTGTCTCTGCTGTTCATTTAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGATCACTGAGCCATATCTGCAGCTGTCTCTGCTGTTCATTTAGAG  834

seq1  ACAGATTTTCACTAAGTTCTAAGTGTGCCTTGAACTGCAGAACCTTCTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTTCACTAAGTTCTAAGTGTGCCTTGAACTGCAGAACCTTCTAC  884

seq1  TTCAGCCTCCTGACAATTGCGTCATTAGGCTCTCTATTTCCTGGCTTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTCCTGACAATTGCGTCATTAGGCTCTCTATTTCCTGGCTTTTG  934

seq1  GATGCTTTAGTCTTCTGAGAGAAATTAATGTTATCTACAGTTTTGTTCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTAGTCTTCTGAGAGAAATTAATGTTATCTACAGTTTTGTTCCT  984

seq1  AATAGATGGTTTTTAAAGATAGCCTCACACTGTAGCTCTGGCTAGCCTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGGTTTTTAAAGATAGCCTCACACTGTAGCTCTGGCTAGCCTGG  1034

seq1  ATCTGTCTCCTTCTGCTTCTTGAGTGCTAGGATTACTTAGTAGAATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTCCTTCTGCTTCTTGAGTGCTAGGATTACTTAGTAGAATTC  1082