BAC Information

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BAC

Clone NameB6Ng01-011D15
Chromosome4 (Build37)
Map Location 85,669,059 - 85,748,182
singlet/doubletdoublet
Overlap geneLOC668052
Upstream geneD530005L17Rik, LOC100040303, Sh3gl2, A930009N24
Downstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011D15.bB6Ng01-011D15.g
ACCDH846668DH846669
length1,011962
definitionDH846668|Mus musculus domesticus DNA, BAC clone: B6Ng01-011D15, 5' end.DH846669|Mus musculus domesticus DNA, BAC clone: B6Ng01-011D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,669,059 - 85,670,075)(85,747,646 - 85,748,182)
sequence
gaattcactccagagaatacaaacaaagccacagcctcatgtgtgatgtc
gtacgatgaagaatgacatgaagcccctttaaaggcctcccgagtttggg
aaaggaatccactttttaaaatctataacaggagatgctaagaagacaaa
aactttgaatatgtgcgtccctggaggccacgaacagaatggcctcagcc
tatggcaggaagcagcattgaaaatacagtttctccatgtggctgagcac
aaagtttgagctgtgtcacctgaacaaagggggctttagttcaattttta
actaagttcttggagctgcatgagattgcaagtatgtaaaaggcgaaaag
atggtaatgttaataaatgttaaggtgagataaaacttggagtgttgcag
actcctgctttggtgtggctagaaatgctgacctgcatatccgtggtaac
tgtgagctgtggaagagcagctggctttcacggtggcctgatgaacaaat
acttgtcttcccttaacacctttaatagataccactcaaatatcatggta
cacgtgcatgtgtgtttgtgtacatacctggacatatgagtgccttcctc
aatcattttatatgttaatcccttgacacagggttgttcaatgaacctgg
agttaatcaatttggttaggacagctggtcagcatgttccaatgatctgt
ctgtctccacactgggattgcaggtgggggccaccatgcctactgtttta
catgtaacattttacatgggtgttaggcataaaactcacgccctcaagcg
taccagcatttactggctgagctatatcctcactcccataaaatatcttc
tgaagacctagctagagtcttattctgaagaactatgttaaagtttactt
taaattttaaacaaaatgctcaagtaatttaggatgcataatgaaagatg
ttctattcatgtaacaagccccaggcttctgtcttccatttctaagtgta
aggaagtgtaa
gaattcttgatcccccattgtaagtactgaggttattattaagcagtacc
atgaccaatgacctaaaggcttaaagaaaaaaatgataagctcaattaat
gtgctgaaagaatgtctccaaaattacctggtacatttaccacttgtgta
cagatgactttgtctgtaaaactatataaaactattcagaaaattcatgc
atgaggttcacagagaacaaagacccttaccacattcatatcttgtgatc
catgcccctgctacatgtgtacagggtcactctagagaaaatggagcaaa
gaattttagcataaaaagaaagagcatttcttcttttctccattatctta
ctgtaaagatacaaaatttatatttttcttaagcagctaaggagttctaa
ctcagatacacatcaaaaatcacttaaagaactttttaaaaatcctgatg
acagagttctatccccataattattttaattggtctctttggtgcctaaa
atttgtatattccaaagttttctatgtcattttaaagtacagttaagagt
aaaaactacttccataacaaaagaagaaataaaactcatatgccatatca
atagatacagaaacgctgtttggcaaacttcagtgtctttcatgacaaat
ttcgaaaaacgctacaggagggactttgctcaagatctaacagcccactt
cccacaagctaaaatcacactcggactcttcctctaggagcagcaatcat
gatacaaccccactcatctatttctatacaaacggtctgagagttttagc
agaacaatggggccagaaaagaagtaaaagatatccaaaccggagtggaa
gaagaacaatagcctctgtgtgtagcatcatctttgatgtaaaatactct
atgccacaaaatattttacactaatttaaaatttcaataaagtttcagaa
gcaaacgaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_85669059_85670075
seq2: B6Ng01-011D15.b_42_1052

seq1  GAATTCACTCCAGAGAATACAAACAAAGCCACAGCCTCATGTGTGATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCAGAGAATACAAACAAAGCCACAGCCTCATGTGTGATGTC  50

seq1  GTACGATGAAGAATGACATGAAGCCCCTTTAAAGGCCTCCCGAGTTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGATGAAGAATGACATGAAGCCCCTTTAAAGGCCTCCCGAGTTTGGG  100

seq1  AAAGGAATCCACTTTTTAAAATCTATAACAGGAGATGCTAAGAAGACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATCCACTTTTTAAAATCTATAACAGGAGATGCTAAGAAGACAAA  150

seq1  AACTTTGAATATGTGCGTCCCTGGAGGCCACGAACAGAATGGCCTCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAATATGTGCGTCCCTGGAGGCCACGAACAGAATGGCCTCAGCC  200

seq1  TATGGCAGGAAGCAGCATTGAAAATACAGTTTCTCCATGTGGCTGAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAGGAAGCAGCATTGAAAATACAGTTTCTCCATGTGGCTGAGCAC  250

seq1  AAAGTTTGAGCTGTGTCACCTGAACAAAGGGGGCTTTAGTTCAATTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGAGCTGTGTCACCTGAACAAAGGGGGCTTTAGTTCAATTTTTA  300

seq1  ACTAAGTTCTTGGAGCTGCATGAGATTGCAAGTATGTAAAAGGCGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTTCTTGGAGCTGCATGAGATTGCAAGTATGTAAAAGGCGAAAAG  350

seq1  ATGGTAATGTTAATAAATGTTAAGGTGAGATAAAACTTGGAGTGTTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAATGTTAATAAATGTTAAGGTGAGATAAAACTTGGAGTGTTGCAG  400

seq1  ACTCCTGCTTTGGTGTGGCTAGAAATGCTGACCTGCATATCCGTGGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCTTTGGTGTGGCTAGAAATGCTGACCTGCATATCCGTGGTAAC  450

seq1  TGTGAGCTGTGGAAGAGCAGCTGGCTTTCACGGTGGCCTGATGAACAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGTGGAAGAGCAGCTGGCTTTCACGGTGGCCTGATGAACAAAT  500

seq1  ACTTGTCTTCCCTTAACACCTTTAATAGATACCACTCAAATATCATGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTTCCCTTAACACCTTTAATAGATACCACTCAAATATCATGGTA  550

seq1  CACGTGCATGTGTGTTTGTGTACATACCTGGACATATGAGTGCCTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCATGTGTGTTTGTGTACATACCTGGACATATGAGTGCCTTCCTC  600

seq1  AATCATTTTATATGTTAATCCCTTGACACAGGGTTGTTCAATGAACCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTATATGTTAATCCCTTGACACAGGGTTGTTCAATGAACCTGG  650

seq1  AGTTAATCAATTTGGTTAGGACAGCTGGTCAGCATGTTCCAATGATCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATCAATTTGGTTAGGACAGCTGGTCAGCATGTTCCAATGATCTGT  700

seq1  CTGTCTCCACACTGGGATTGCAGGTGGGGGCCACCATGCCTACTGTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCACACTGGGATTGCAGGTGGGGGCCACCATGCCTACTGTTTTA  750

seq1  CATGTAACATTTTACATGGGTGTTAGGCATAAAACTCAGGCCCTCAAGCG  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATGTAACATTTTACATGGGTGTTAGGCATAAAACTCACGCCCTCAAGCG  800

seq1  TACCAGCATTTACTGGCTGAGCTATATCCTCACTCCCATAAAATATCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCATTTACTGGCTGAGCTATATCCTCACTCCCATAAAATATCTTC  850

seq1  TGAAGACCTAGCTAGAGTCTTATTCTGAAGAACTATGTTAAAAGTTTACT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAAGACCTAGCTAGAGTCTTATTCTGAAGAACTATGTT-AAAGTTTACT  899

seq1  TTAAATTTTAAACAAAATGCTCAAAGTAATTTAGGATGCATAATGAAAAG  950
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  TTAAATTTTAAACAAAATGCTC-AAGTAATTTAGGATGCATAATG-AAAG  947

seq1  ATGTTCTAATTCATGTAACAAGCCCCAGGCTTCTGTCTTCCATTTCTAAA  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGTTCT-ATTCATGTAACAAGCCCCAGGCTTCTGTCTTCCATTTCT-AA  995

seq1  GTGTAAGGAAAGTGTAA  1017
      |||||||| ||||||||
seq2  GTGTAAGG-AAGTGTAA  1011

seq1: chr4_85747646_85748182
seq2: B6Ng01-011D15.g_68_604 (reverse)

seq1  CTTTAAAATGACATAGAAAACTTTGGAATATACAAATTTTAGGCACCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATGACATAGAAAACTTTGGAATATACAAATTTTAGGCACCAAA  50

seq1  GAGACCAATTAAAATAATTATGGGGATAGAACTCTGTCATCAGGATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAATTAAAATAATTATGGGGATAGAACTCTGTCATCAGGATTTTT  100

seq1  AAAAAGTTCTTTAAGTGATTTTTGATGTGTATCTGAGTTAGAACTCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTCTTTAAGTGATTTTTGATGTGTATCTGAGTTAGAACTCCTTA  150

seq1  GCTGCTTAAGAAAAATATAAATTTTGTATCTTTACAGTAAGATAATGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTAAGAAAAATATAAATTTTGTATCTTTACAGTAAGATAATGGAG  200

seq1  AAAAGAAGAAATGCTCTTTCTTTTTATGCTAAAATTCTTTGCTCCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAAATGCTCTTTCTTTTTATGCTAAAATTCTTTGCTCCATTTT  250

seq1  CTCTAGAGTGACCCTGTACACATGTAGCAGGGGCATGGATCACAAGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGTGACCCTGTACACATGTAGCAGGGGCATGGATCACAAGATAT  300

seq1  GAATGTGGTAAGGGTCTTTGTTCTCTGTGAACCTCATGCATGAATTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGTAAGGGTCTTTGTTCTCTGTGAACCTCATGCATGAATTTTCT  350

seq1  GAATAGTTTTATATAGTTTTACAGACAAAGTCATCTGTACACAAGTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTTTTATATAGTTTTACAGACAAAGTCATCTGTACACAAGTGGTA  400

seq1  AATGTACCAGGTAATTTTGGAGACATTCTTTCAGCACATTAATTGAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACCAGGTAATTTTGGAGACATTCTTTCAGCACATTAATTGAGCTT  450

seq1  ATCATTTTTTTCTTTAAGCCTTTAGGTCATTGGTCATGGTACTGCTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTTTCTTTAAGCCTTTAGGTCATTGGTCATGGTACTGCTTAAT  500

seq1  AATAACCTCAGTACTTACAATGGGGGATCAAGAATTC  537
      |||||||||||||||||||||||||||||||||||||
seq2  AATAACCTCAGTACTTACAATGGGGGATCAAGAATTC  537