BAC Information

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BAC

Clone NameB6Ng01-011F22
Chromosome4 (Build37)
Map Location 98,871,106 - 98,996,169
singlet/doubletdoublet
Overlap geneAtg4c
Upstream geneLOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193
Downstream geneLOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2, Ror1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011F22.bB6Ng01-011F22.g
ACCDH846775DH846776
length1,152941
definitionDH846775|Mus musculus domesticus DNA, BAC clone: B6Ng01-011F22, 5' end.DH846776|Mus musculus domesticus DNA, BAC clone: B6Ng01-011F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,995,007 - 98,996,169)(98,871,106 - 98,872,047)
sequence
gaattcaagatcaagagtgcctgattccaaatccccagcatttagcccac
aaagcacccaaccacctttctatttcccaactgtataggtagcgttccat
gcaaaaagatctgcctgtgtgtccgtgttagactgtcatctctgtggaag
aaacaagttcaggttttgatccactgtactgctggttcattgtttctgtt
gtgagacaagggtttggtgggttgaaactcctcacctcataatgtccagg
aagctgagagacaatgaggacccagaacaagacatcacctccaagaatgc
accccagtaagctacctcttcaaatccagcgccatttctaagagtttctt
ttccatcactcctaacgatgtcttagaccatgaacctgtcggtggataag
cccattgtttaggtaagactcttcatggtatagtcacccctcaaaggctg
gatgtaccagcctgtagtccaaacctgaaatacatgagtcttttaggagg
atgtttcatacccaaactaaaacagtgcccatggttctaagggcttaggg
tcatgccttactacctgcctccaacaaactgtatgtttatagatgcctgg
ctcttagcagtttctcgataaacatatatgtataaaactaacataactaa
ggccatccactactcctgctctgtgtgtggagttaggctctcctagtgca
tactagtgttctcactagctctcttccattgcttagcaatagtgctctct
acattgatctgtaaaaataaaataaaatagtgcactattaactagactgg
agttctcttactagcgctatgcctggcacatggtaggcacctgaagtaga
gactgcaggttgcttccccttaagctcttccctcttcttcctggagccca
catgtgctgcgtttcttggtttcctgcacagatgtcatttgactgggggt
agcatgatagcagcgcattccacttctagccctccacagtgctcctccct
ttatagcaggcttcatatcacagcagtgctttcagacagaaaggtgactg
ggagcagacctggagtttctggtagagaagaatcatcagaccaaggttac
taggaagtctgactgatgagacctgggttttattctgtttgtagaggcag
cc
gaattctctagaacagttcacaggacaatgaacagtttaaaacagtattg
gcctttatagttataactgtattgtgggttttatacagtactcattaatt
accttgatctggaagtgtccagtcagaggctaaggaagtgcggctggcaa
agaaggactcatttctgtgggttaatgctgggtgcttgatcagggtaacg
gtttgtgaggggtgagagtgaacggaggcagattgggggttttgcagttt
gaatgggatctatttagagccttttatatgtcacattttcttttgctact
cttttctaccaagagtcactgatttagagaagccactgatggactggagg
gtatcacacaaggaccagtgactgcgagctactcaggattctaacactgc
ctaattattagatactctgtaagttccttttgagtctggagatttgttta
aacttcagctcttacagtgatgatttttatgtagagactgaatatattta
acagcttggcaagctgtattttttaagtataagatcttgaagtgtttgca
gttgacttgaatcgatgagaagttaccgagatcctgacatagcatttatc
aatcaaatgcagcaaatactaagtagataccggagataaaatgaagacag
gaaagctacccttcagatagtaataactttttttttttttggtttttttc
gagacagggtttctctgtgtagccctggctgtcctggaactcactctgta
gaccaggctggcctcgaactcagaaatccgcctgcctctgtctcccaagt
gctgggattaaaggcatgcgccaccacgcccagcaacttttttgaggcaa
ggtttctctatgtagccctgggtgtctttttaatgttttgaaggaaaggc
tactactttttttttttttttaagattatagtatttttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_98995007_98996169
seq2: B6Ng01-011F22.b_42_1193 (reverse)

seq1  GGCTGCCTCTAACAAACAGAATATAAACCCAGG-CTCATTCATGTCAGAC  49
      |||||||||| |||||||||||| ||||||||| |||| ||| |||||||
seq2  GGCTGCCTCT-ACAAACAGAATA-AAACCCAGGTCTCA-TCA-GTCAGAC  46

seq1  TTCCTAGTACCTGTGGTCTGTGTGATTCTTCTCTACCCAGGAACTCAGGG  99
      ||||||||| |  |||||||  ||||||||||||| |||| |||||  ||
seq2  TTCCTAGTAACCTTGGTCTG-ATGATTCTTCTCTA-CCAGAAACTCCAGG  94

seq1  TCTGCCTCCAGTCACCTCTCTGTCCTGGAAGGCACTGCTGTGATATGAAG  149
      |||||  |||||||||| ||||||   ||| |||||||||||||||||||
seq2  TCTGCTCCCAGTCACCTTTCTGTC--TGAAAGCACTGCTGTGATATGAAG  142

seq1  CCTGTTAAAAAGGGGAGGAGCAACTGTGGAGGGCCTAGAAGTGGAATGCG  199
      |||| || ||| ||||||||| ||||||||||| ||||||||||||||| 
seq2  CCTGCTATAAA-GGGAGGAGC-ACTGTGGAGGG-CTAGAAGTGGAATGC-  188

seq1  GCTGCTATCATGCTACCCCCAGTCAAATGACATCTGTGCAGGAAACCAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATCATGCTACCCCCAGTCAAATGACATCTGTGCAGGAAACCAAG  238

seq1  AAACGCAGCACATGTGGGCTCCAGGAAGAAGAGGGAAGAGCTTAAGGGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCAGCACATGTGGGCTCCAGGAAGAAGAGGGAAGAGCTTAAGGGGA  288

seq1  AGCAACCTGCAGTCTCTACTTCAGGTGCCTACCATGTGCCAGGCATAGCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCTGCAGTCTCTACTTCAGGTGCCTACCATGTGCCAGGCATAGCG  338

seq1  CTAGTAAGAGAACTCCAGTCTAGTTAATAGTGCACTATTTTATTTTATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAGAGAACTCCAGTCTAGTTAATAGTGCACTATTTTATTTTATTT  388

seq1  TTACAGATCAATGTAGAGAGCACTATTGCTAAGCAATGGAAGAGAGCTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATCAATGTAGAGAGCACTATTGCTAAGCAATGGAAGAGAGCTAG  438

seq1  TGAGAACACTAGTATGCACTAGGAGAGCCTAACTCCACACACAGAGCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACACTAGTATGCACTAGGAGAGCCTAACTCCACACACAGAGCAGG  488

seq1  AGTAGTGGATGGCCTTAGTTATGTTAGTTTTATACATATATGTTTATCGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGGATGGCCTTAGTTATGTTAGTTTTATACATATATGTTTATCGA  538

seq1  GAAACTGCTAAGAGCCAGGCATCTATAAACATACAGTTTGTTGGAGGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGCTAAGAGCCAGGCATCTATAAACATACAGTTTGTTGGAGGCAG  588

seq1  GTAGTAAGGCATGACCCTAAGCCCTTAGAACCATGGGCACTGTTTTAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAGGCATGACCCTAAGCCCTTAGAACCATGGGCACTGTTTTAGTT  638

seq1  TGGGTATGAAACATCCTCCTAAAAGACTCATGTATTTCAGGTTTGGACTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGAAACATCCTCCTAAAAGACTCATGTATTTCAGGTTTGGACTA  688

seq1  CAGGCTGGTACATCCAGCCTTTGAGGGGTGACTATACCATGAAGAGTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGTACATCCAGCCTTTGAGGGGTGACTATACCATGAAGAGTCTT  738

seq1  ACCTAAACAATGGGCTTATCCACCGACAGGTTCATGGTCTAAGACATCGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAACAATGGGCTTATCCACCGACAGGTTCATGGTCTAAGACATCGT  788

seq1  TAGGAGTGATGGAAAAGAAACTCTTAGAAATGGCGCTGGATTTGAAGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGATGGAAAAGAAACTCTTAGAAATGGCGCTGGATTTGAAGAGG  838

seq1  TAGCTTACTGGGGTGCATTCTTGGAGGTGATGTCTTGTTCTGGGTCCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTACTGGGGTGCATTCTTGGAGGTGATGTCTTGTTCTGGGTCCTCA  888

seq1  TTGTCTCTCAGCTTCCTGGACATTATGAGGTGAGGAGTTTCAACCCACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTCAGCTTCCTGGACATTATGAGGTGAGGAGTTTCAACCCACCA  938

seq1  AACCCTTGTCTCACAACAGAAACAATGAACCAGCAGTACAGTGGATCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTGTCTCACAACAGAAACAATGAACCAGCAGTACAGTGGATCAAA  988

seq1  ACCTGAACTTGTTTCTTCCACAGAGATGACAGTCTAACACGGACACACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACTTGTTTCTTCCACAGAGATGACAGTCTAACACGGACACACAG  1038

seq1  GCAGATCTTTTTGCATGGAACGCTACCTATACAGTTGGGAAATAGAAAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTTTTTGCATGGAACGCTACCTATACAGTTGGGAAATAGAAAGG  1088

seq1  TGGTTGGGTGCTTTGTGGGCTAAATGCTGGGGATTTGGAATCAGGCACTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGGTGCTTTGTGGGCTAAATGCTGGGGATTTGGAATCAGGCACTC  1138

seq1  TTGATCTTGAATTC  1163
      ||||||||||||||
seq2  TTGATCTTGAATTC  1152

seq1: chr4_98871106_98872047
seq2: B6Ng01-011F22.g_65_1005

seq1  GAATTCTCTAGAACAGTTCACAGGACAATGAACAGTTTAAAACAGTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGAACAGTTCACAGGACAATGAACAGTTTAAAACAGTATTG  50

seq1  GCCTTTATAGTTATAACTGTATTGTGGGTTTTATACAGTACTCATTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATAGTTATAACTGTATTGTGGGTTTTATACAGTACTCATTAATT  100

seq1  ACCTTGATCTGGAAGTGTCCAGTCAGAGGCTAAGGAAGTGCGGCTGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGATCTGGAAGTGTCCAGTCAGAGGCTAAGGAAGTGCGGCTGGCAA  150

seq1  AGAAGGACTCATTTCTGTGGGTTAATGCTGGGTGCTTGATCAGGGTAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACTCATTTCTGTGGGTTAATGCTGGGTGCTTGATCAGGGTAACG  200

seq1  GTTTGTGAGGGGTGAGAGTGAACGGAGGCAGATTGGGGGTTTTGCAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGAGGGGTGAGAGTGAACGGAGGCAGATTGGGGGTTTTGCAGTTT  250

seq1  GAATGGGATCTATTTAGAGCCTTTTATATGTCACATTTTCTTTTGCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGATCTATTTAGAGCCTTTTATATGTCACATTTTCTTTTGCTACT  300

seq1  CTTTTCTACCAAGAGTCACTGATTTAGAGAAGCCACTGATGGACTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTACCAAGAGTCACTGATTTAGAGAAGCCACTGATGGACTGGAGG  350

seq1  GTATCACACAAGGACCAGTGACTGCGAGCTACTCAGGATTCTAACACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACACAAGGACCAGTGACTGCGAGCTACTCAGGATTCTAACACTGC  400

seq1  CTAATTATTAGATACTCTGTAAGTTCCTTTTGAGTCTGGAGATTTGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATTAGATACTCTGTAAGTTCCTTTTGAGTCTGGAGATTTGTTTA  450

seq1  AACTTCAGCTCTTACAGTGATGATTTTTATGTAGAGACTGAATATATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAGCTCTTACAGTGATGATTTTTATGTAGAGACTGAATATATTTA  500

seq1  ACAGCTTGGCAAGCTGTATTTTTTAAGTATAAGATCTTGAAGTGTTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGGCAAGCTGTATTTTTTAAGTATAAGATCTTGAAGTGTTTGCA  550

seq1  GTTGACTTGAATCGATGAGAAGTTACCGAGATCCTGACATAGCATTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTTGAATCGATGAGAAGTTACCGAGATCCTGACATAGCATTTATC  600

seq1  AATCAAATGCAGCAAATACTAAGTAGATACCGGAGATAAAATGAAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATGCAGCAAATACTAAGTAGATACCGGAGATAAAATGAAGACAG  650

seq1  GAAAGCTA-CCTTCAGATAGTAATAACTTTTTTTTTTTTTGGTTTTTTTC  699
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTACCCTTCAGATAGTAATAACTTTTTTTTTTTTTGGTTTTTTTC  700

seq1  GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTA  750

seq1  GACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTCTCCCAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTCTCCCAAGT  800

seq1  GCTGGGATTAAAGGCATGCGCCACCACGCCCAGCAACTTTTTTTGAGGCA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTGGGATTAAAGGCATGCGCCACCACGCCCAGCAAC-TTTTTTGAGGCA  849

seq1  AGGTTTCTCTATGTAGCCTTGGGTGTCTTTTTAATGTTTTGAAGGAAAGG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGTTTCTCTATGTAGCCCTGGGTGTCTTTTTAATGTTTTGAAGGAAAGG  899

seq1  CTACTACTTTTTTTTTTTTTTTAGGATTTATATTATTTTTATT  942
      ||||||||||||||||||||||| || ||||| ||||||||||
seq2  CTACTACTTTTTTTTTTTTTTTAAGA-TTATAGTATTTTTATT  941