BAC Information

Click to search

BAC

Clone NameB6Ng01-011J09
Chromosome4 (Build37)4 (Build37)
Map Location 146,889,007 - 146,889,634146,818,311 - 146,818,881
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671
Downstream geneLOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011J09.bB6Ng01-011J09.g
ACCDH846927DH846928
length630572
definitionDH846927|Mus musculus domesticus DNA, BAC clone: B6Ng01-011J09, 5' end.DH846928|Mus musculus domesticus DNA, BAC clone: B6Ng01-011J09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,889,007 - 146,889,634)(146,818,311 - 146,818,881)
sequence
gaattcatacaggagaggaaccttacaaatagtttgtatgtgacaaatac
aatactcacaatgtcagtctgagaaatcatcagttatttcatacagtaga
gaatctttataaatgaagtgaatgagacaattctttaccaagatacagca
tcttaaaattcactagagaatacttacagaagaggaacttttcaaatata
tcgaaggtatgaattctttatttttgcctatttcctagaatgtaactgtg
aatgctaataagctagaaacttaacgcatgtattgtatgaagaaatatct
ttgaattcattttagtcagagaaaacatctaagaactttttaagggaaag
tatttctgttgagaaaaaggtggcatatgttttattcatggcatattctt
ggcaatactcaaggctccacactagagaattagtataattatgagaatct
tttgaaaattttcatgcaatgttcaaatcttaaataatgtcgactctgac
aatttgaaaaaatgtagcaagcctttctttctttctttctttctttcttt
ctttctttctttctttcttttttttggggggggttggtttttagagacag
ggtttctctgtatatcatggccatcctgta
actttgtagaccaggctggcctcggactcagaaatttccctgcctctgcc
tcccaagtgctgggattgaagtcatgggccaccattcccagcggtgataa
tgtcttttctccatcacatgtttattagtgcgtgaagtgttcagaggatt
ggcacaccatcacagagcatagattactattgcatccatacacctttgac
atctctggcctatggagaccctttgagaatggatctggcctatatgcatc
tatgtttccctgccttcagaggtctgattcttgggatttttgtgactcac
ccagcaccttccatctggaaagccagtaagcaccctctcatctacattct
gcccatttctctcatcttctctttctttggcttcataatattcacaggcc
attcaaactcagttatttttatcgtgaggcaaaccatgttcataggttca
tagactgggattttttttccctagacttttgccaagtagatcttggttct
ggatttcagagtggttttgttttttgttttttgttttttgttttttttgg
ttgttgttgttgttttgttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146889007_146889634
seq2: B6Ng01-011J09.b_47_676

seq1  GAATTCATACAGGAGAGGAACCTTACAAATAGTTTGTATGTGACAAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGGAGAGGAACCTTACAAATAGTTTGTATGTGACAAATAC  50

seq1  AATACTCACAATGTCAGTCTGAGAAATCATCAGTTATTTCATACAGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCACAATGTCAGTCTGAGAAATCATCAGTTATTTCATACAGTAGA  100

seq1  GAATCTTTATAAATGAAGTGAATGAGACAATTCTTTACCAAGATACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTATAAATGAAGTGAATGAGACAATTCTTTACCAAGATACAGCA  150

seq1  TCTTAAAATTCACTAGAGAATACTTACAGAAGAGGAACTTTTCAAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATTCACTAGAGAATACTTACAGAAGAGGAACTTTTCAAATATA  200

seq1  TCGAAGGTATGAATTCTTTATTTTTGCCTATTTCCTAGAATGTAACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGGTATGAATTCTTTATTTTTGCCTATTTCCTAGAATGTAACTGTG  250

seq1  AATGCTAATAAGCTAGAAACTTAACGCATGTATTGTATGAAGAAATATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAATAAGCTAGAAACTTAACGCATGTATTGTATGAAGAAATATCT  300

seq1  TTGAATTCATTTTAGTCAGAGAAAACATCTAAGAACTTTTTAAGGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCATTTTAGTCAGAGAAAACATCTAAGAACTTTTTAAGGGAAAG  350

seq1  TATTTCTGTTGAGAAAAAGGTGGCATATGTTTTATTCATGGCATATTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGTTGAGAAAAAGGTGGCATATGTTTTATTCATGGCATATTCTT  400

seq1  GGCAATACTCAAGGCTCCACACTAGAGAATTAGTATAATTATGAGAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATACTCAAGGCTCCACACTAGAGAATTAGTATAATTATGAGAATCT  450

seq1  TTTGAAAATTTTCATGCAATGTTCAAATCTTAAATAATGTCGACTCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATTTTCATGCAATGTTCAAATCTTAAATAATGTCGACTCTGAC  500

seq1  AATTTGAAAAAATGTAGCAAGCCTTTCTTTCTTTCTTTCTTTCTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAAAAATGTAGCAAGCCTTTCTTTCTTTCTTTCTTTCTTTCTTT  550

seq1  CTTTCTTTCTTTCT---TTTTTTTGGGGGGGGGTTGGTTTTTAGAGACAG  597
      ||||||||||||||   ||||||| |||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTTTTTTGGGGGGGGTTGGTTTTTAGAGACAG  600

seq1  GGTTTCTCTGTATATCCATGGCCATCCTGTA  628
      ||||||||||||||| |||||||||||||||
seq2  GGTTTCTCTGTATAT-CATGGCCATCCTGTA  630

seq1: chr4_146818311_146818881
seq2: B6Ng01-011J09.g_66_643

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTTGGACTCATAAATTCCCCTGCC  50
      |||||||||||||||||||||||||||| ||||||| ||||| |||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCGGACTCAGAAATTTCCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTGAAGGCGTGGGCCACCATTCCCAGCGG  100
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTGAAGTCATGGGCCACCATTCCCAGCGG  100

seq1  TGATAATGTCTTTTCTCCATCACATGTTTATTAGTGCGTGAAGTGTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGTCTTTTCTCCATCACATGTTTATTAGTGCGTGAAGTGTTCAG  150

seq1  AGGATTGGCACACCATCACAGAGCATAGATTACTATTGCATCCATACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGGCACACCATCACAGAGCATAGATTACTATTGCATCCATACACC  200

seq1  TTTGACATCTCTGGCCTATGGAGACCCTTTGAGAATGGATCTGGCCTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATCTCTGGCCTATGGAGACCCTTTGAGAATGGATCTGGCCTATA  250

seq1  TGCATCTATGTTTCCCTGCCTTCAGAGGTCTGATTCTTGGGATTTTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTATGTTTCCCTGCCTTCAGAGGTCTGATTCTTGGGATTTTTGTG  300

seq1  ACTCACCCAGCACCTTCCATCTGGAAAGCCAGTAAGCACTCTCTCATCTA  350
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTCACCCAGCACCTTCCATCTGGAAAGCCAGTAAGCACCCTCTCATCTA  350

seq1  CATTCTGCCCATTTCTCTCATCTTCTCTTTCCTTGGCTTCATAATATTCA  400
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATTCTGCCCATTTCTCTCATCTTCTCTTTCTTTGGCTTCATAATATTCA  400

seq1  CAGGCCATTCAAACTCAGTTATTTTTATCGTGAGGCAAACCATGTTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATTCAAACTCAGTTATTTTTATCGTGAGGCAAACCATGTTCATA  450

seq1  GGTTCATAGACTGGGA-TTTTTTTCCCTAAACTTTTGGCCAAGTAGATCT  499
      |||||||||||||||| |||||||||||| |||||| |||||||||||||
seq2  GGTTCATAGACTGGGATTTTTTTTCCCTAGACTTTT-GCCAAGTAGATCT  499

seq1  TGGTTCTGGATTTCAGAGTGGTTTTGTTTTTTG-TTTTTGTTTTTTGTTT  548
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGTTCTGGATTTCAGAGTGGTTTTGTTTTTTGTTTTTTGTTTTTTGTTT  549

seq1  T------TTGTTGTTGTAGTTTTGTTTTG  571
      |      |||||||||| |||||||||||
seq2  TTTTTGGTTGTTGTTGTTGTTTTGTTTTG  578