BAC Information

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BAC

Clone NameB6Ng01-011N22
Chromosome4 (Build37)
Map Location 6,559,793 - 6,701,565
singlet/doubletdoublet
Overlap geneTox
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneLOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011N22.bB6Ng01-011N22.g
ACCDH847133DH847134
length6061,067
definitionDH847133|Mus musculus domesticus DNA, BAC clone: B6Ng01-011N22, 5' end.DH847134|Mus musculus domesticus DNA, BAC clone: B6Ng01-011N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,559,793 - 6,560,381)(6,700,491 - 6,701,565)
sequence
gaattcaatggtctgatctgcataagagatcaatttaaggtcagataagc
cagcctatttcattctggagtttcagaacttctgggaatgaagctctatc
tcactgcccaggcaaggtgcaggacctgttctgattgttgcagctgtgta
gggacatggcacattctccactctcaaaacccaagggccagttcttctgc
ctgccatagatgacaaggaacaagggaggggagaagcacatgtctccctc
atctgcatctctgcccagtagaaaagaggcagggttggctctctagtgct
cataaccatgtagagccatctttgctcattggtagtggggaggacaaaag
ggaggagaaaggatctctgcctccatgacctccctgcacagcagataaca
ggcacagctgtcttttccatgctcacacccttagggccaacttacctgta
acccccacgtgcactgaccaggtgaggtgcagggcctgctctccagagtg
ctgcaggtggtgaggggcagagccaattctactgctctcaggatgccagg
gtcagttatcctgcctcctacagggggtagagaggaatgggggagaagag
tacttt

gaattctcttcactaactgggagggatggctctgctagctcatgcagctt
gaagtaagactgtagacacagtggacaagaagaagcaacaagttgttctg
aattcagaattggtttggagtgatacgggcttgctgttccggcaacagga
actctagacactgaagtgcattgctctcccatgagaacaggctcattcag
ggaaaagttggacaacttggagaagacaagaggtgacagagtgagcagca
actttacctcacagctaactagccagaaagagactggaaatagcaaatct
gtgtcagcttttcaagcacagctagcaatgggtacgagcctatctgacgc
ccaagaaaagacagtgcttagtaactgacgctctaaaatggggtagaagt
tatttcttctattacagtacttaccactcacaaatgatgcagaatacttt
tgttttcagtctatacctaagttaaggatgcatcatctgttgtcatcttt
tatgactgactatataaatagacactctttagaattaaaatatttatttt
tcaattaaaatatttatatgtgtattaggaaaattaaaattctgaaatta
aaatgtgattaatgattacattatttactattttaatttctaaacaaaag
gcttacttttactacagttgtttattttttaacaactacaagtcagaaga
caacttgtgggacttggttcccccttccactgtgtgtccaaggtatcaaa
actcaggtcacgcttcgcagcgctaaagtgcttttatcatttttatcgtc
atgccagaccgttataggaatgctagaaacatttttatacgtttctaagt
aagtgtttcagcccatgctgcacttagaatcacttgattacaatctttgc
tctgaatgtgaaatgctttggaatgcattattctgcatatcatcatgcat
gcaataaccttatggaattcattctgactaggaaaaaaatgaaatttaga
caagctgcaatgcacttttattgaataaaatggagaaagcatcttaagaa
tttaagacagtagtagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6559793_6560381
seq2: B6Ng01-011N22.b_48_636

seq1  GAATTCAATGGTCTGATCTGCATAAGAGATCAATTTAAGGTCAGATAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGTCTGATCTGCATAAGAGATCAATTTAAGGTCAGATAAGC  50

seq1  CAGCCTATTTCATTCTGGAGTTTCAGAACTTCTGGGAATGAAGCTCTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTATTTCATTCTGGAGTTTCAGAACTTCTGGGAATGAAGCTCTATC  100

seq1  TCACTGCCCAGGCAAGGTGCAGGACCTGTTCTGATTGTTGCAGCTGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCCAGGCAAGGTGCAGGACCTGTTCTGATTGTTGCAGCTGTGTA  150

seq1  GGGACATGGCACATTCTCCACTCTCAAAACCCAAGGGCCAGTTCTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATGGCACATTCTCCACTCTCAAAACCCAAGGGCCAGTTCTTCTGC  200

seq1  CTGCCATAGATGACAAGGAACAAGGGAGGGGAGAAGCACATGTCTCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATAGATGACAAGGAACAAGGGAGGGGAGAAGCACATGTCTCCCTC  250

seq1  ATCTGCATCTCTGCCCAGTAGAAAAGAGGCAGGGTTGGCTCTCTAGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATCTCTGCCCAGTAGAAAAGAGGCAGGGTTGGCTCTCTAGTGCT  300

seq1  CATAACCATGTAGAGCCATCTTTGCTCATTGGTAGTGGGGAGGACAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCATGTAGAGCCATCTTTGCTCATTGGTAGTGGGGAGGACAAAAG  350

seq1  GGAGGAGAAAGGATCTCTGCCTCCATGACCTCCCTGCACAGCAGATAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAAAGGATCTCTGCCTCCATGACCTCCCTGCACAGCAGATAACA  400

seq1  GGCACAGCTGTCTTTTCCATGCTCACACCCTTAGGGCCAACTTACCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGCTGTCTTTTCCATGCTCACACCCTTAGGGCCAACTTACCTGTA  450

seq1  ACCCCCACGTGCACTGACCAGGTGAGGTGCAGGGCCTGCTCTCCAGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCACGTGCACTGACCAGGTGAGGTGCAGGGCCTGCTCTCCAGAGTG  500

seq1  CTGCAGGTGGTGAGGGGCAGAGCCAATTCTACTGCTCTCAGGATGCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGTGGTGAGGGGCAGAGCCAATTCTACTGCTCTCAGGATGCCAGG  550

seq1  GTCAGTTATCCTGCCTCCTACAGGGGGTAGAGAGGAATG  589
      |||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTATCCTGCCTCCTACAGGGGGTAGAGAGGAATG  589


seq1: chr4_6700491_6701565
seq2: B6Ng01-011N22.g_68_1134 (reverse)

seq1  ACTACTACTGTCTTAAAAATTCTCTAAGATTCCTTTTTCTCCA-TTTATT  49
      ||||||||||||||  ||||||| |||||| |   |||||||| ||||||
seq2  ACTACTACTGTCTT--AAATTCT-TAAGATGC---TTTCTCCATTTTATT  44

seq1  CCATAAAGGTGCATTGCAGCTTGTTCTTAAATTTCATTTTTTTCCTAGTC  99
      | ||||| ||||||||||||||||   |||||||||||||||||||||||
seq2  CAATAAAAGTGCATTGCAGCTTGT--CTAAATTTCATTTTTTTCCTAGTC  92

seq1  AGAATGAATTCCATAAGGTTATTTGCATGCATGATGATATGCAGAATAAA  149
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  AGAATGAATTCCATAAGGTTA-TTGCATGCATGATGATATGCAGAAT-AA  140

seq1  TGCATTCCAAAGCATTTCACATTCAGAGCAAAGATTGTAATCAAGTGATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCAAAGCATTTCACATTCAGAGCAAAGATTGTAATCAAGTGATT  190

seq1  CTAAGTGCAGCATGGGCTGAAACACTTACTTAGAAACGTATAAAAATGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCAGCATGGGCTGAAACACTTACTTAGAAACGTATAAAAATGTT  240

seq1  TCTAGCATTCCTATAACGGTCTGGCATGACGATAAAAATGATAAAAGCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATTCCTATAACGGTCTGGCATGACGATAAAAATGATAAAAGCAC  290

seq1  TTTAGCGCTGCGAAGCCTGACCTGAG-TTTGATACCTTGGACACACAGTG  348
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  TTTAGCGCTGCGAAGCGTGACCTGAGTTTTGATACCTTGGACACACAGTG  340

seq1  GAAGGGGGAACCAAGTCCCACAAGTTGTCTTCTGACTTGTAGTTGTTAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGGAACCAAGTCCCACAAGTTGTCTTCTGACTTGTAGTTGTTAAA  390

seq1  AAATAAACAACTGTAGTAAAAGTAAGCCTTTTGTTTAGAAATTAAAATAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACAACTGTAGTAAAAGTAAGCCTTTTGTTTAGAAATTAAAATAG  440

seq1  TAAATAATGTAATCATTAATCACATTTTAATTTCAGAATTTTAATTTTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATGTAATCATTAATCACATTTTAATTTCAGAATTTTAATTTTCC  490

seq1  TAATACACATATAAATATTTTAATTGAAAAATAAATATTTTAATTCTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACACATATAAATATTTTAATTGAAAAATAAATATTTTAATTCTAAA  540

seq1  GAGTGTCTATTTATATAGTCAGTCATAAAAGATGACAACAGATGATGCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTATTTATATAGTCAGTCATAAAAGATGACAACAGATGATGCAT  590

seq1  CCTTAACTTAGGTATAGACTGAAAACAAAAGTATTCTGCATCATTTGTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACTTAGGTATAGACTGAAAACAAAAGTATTCTGCATCATTTGTGA  640

seq1  GTGGTAAGTACTGTAATAGAAGAAATAACTTCTACCCCATTTTAGAGCGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAGTACTGTAATAGAAGAAATAACTTCTACCCCATTTTAGAGCGT  690

seq1  CAGTTACTAAGCACTGTCTTTTCTTGGGCGTCAGATAGGCTCGTACCCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTAAGCACTGTCTTTTCTTGGGCGTCAGATAGGCTCGTACCCAT  740

seq1  TGCTAGCTGTGCTTGAAAAGCTGACACAGATTTGCTATTTCCAGTCTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTGTGCTTGAAAAGCTGACACAGATTTGCTATTTCCAGTCTCTT  790

seq1  TCTGGCTAGTTAGCTGTGAGGTAAAGTTGCTGCTCACTCTGTCACCTCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTAGTTAGCTGTGAGGTAAAGTTGCTGCTCACTCTGTCACCTCTT  840

seq1  GTCTTCTCCAAGTTGTCCAACTTTTCCCTGAATGAGCCTGTTCTCATGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCCAAGTTGTCCAACTTTTCCCTGAATGAGCCTGTTCTCATGGG  890

seq1  AGAGCAATGCACTTCAGTGTCTAGAGTTCCTGTTGCCGGAACAGCAAGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATGCACTTCAGTGTCTAGAGTTCCTGTTGCCGGAACAGCAAGCC  940

seq1  CGTATCACTCCAAACCAATTCTGAATTCAGAACAACTTGTTGCTTCTTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCACTCCAAACCAATTCTGAATTCAGAACAACTTGTTGCTTCTTCT  990

seq1  TGTCCACTGTGTCTACAGTCTTACTTCAAGCTGCATGAGCTAGCAGAGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACTGTGTCTACAGTCTTACTTCAAGCTGCATGAGCTAGCAGAGCC  1040

seq1  ATCCCTCCCAGTTAGTGAAGAGAATTC  1075
      |||||||||||||||||||||||||||
seq2  ATCCCTCCCAGTTAGTGAAGAGAATTC  1067


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