BAC Information

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BAC

Clone NameB6Ng01-012A03
Chromosome10 (Build37)4 (Build37)
Map Location 126,311,588 - 126,311,69689,695,046 - 89,696,121
singlet/doubletsingletsinglet
Overlap geneXrcc6bp1
Upstream geneLrig3, LOC100043547, LOC668336
Downstream geneLOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012A03.bB6Ng01-012A03.g
ACCDH847222DH847223
length4351,063
definitionDH847222|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A03, 5' end.DH847223|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(126,311,588 - 126,311,696)(89,695,046 - 89,696,121)
sequence
tatgctgaacatctggtcataggctttgttcattggtagtcttttaatta
ctccttttatttactaggcactatcagtctatttaagttgttatctcatt
atgttttaactttggtaatacacacacacacacacacacacacacacaca
cacacacatatatatatatatttagattctgtagtttggtggaatataga
tatttaagtataccattatgattctttgaacattctctggtcttgctgtt
ccttagcgcagtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tagagagagagaagagagagagagagagagacagagagagagagagaggg
gggggagtgagaggggggggggagagcgacctatccatccgaaaacgccc
ccatttaacttttgggggggcaaacaccccccccc
gaattctttcagttcatatgatttgtagaatgtaaacaatggatttgaac
atatgatgacttggaacggtatagatacactaaggccttgaagaaagaga
agagagatgagacaggagagatgtgagcacgcagaagataggatcagggt
gacctctacacactttaatgtagagtgaactgctcttttaaatgctttat
ttttctttttaatctcaagatttacataaagaaacttatatttgtattta
gatatagtagtttggtttcaatgacagaggaggatattgtattttgatga
cagcccaaatactataaatttaaatagatcaacaacccagtaggattcca
gaggtccaggacttggggatgaatctttcctcccttgattgactttcaaa
ttcatctcaatatattgatgacatgaaacattattttgacatgtttggag
aatgcggggagttatactgatgatttgaatgactcagtagactacaacta
accccatcacataaagattctctatattaggaaagattatatatctgtct
ataaccactgatttagataatttctatttttgttttcttttttctattag
gtatttatttcatttacatttccaatgctatcccaaaagtgccccacatg
ctcccccacccactcccccacccacccactcccacttcttggccctggtg
ttcccctgtactgaagcagataaagtttgcatgaacaatgggcctctctt
tccactgattgccaactaggccatcttctgattcatatgcatctagagac
acaagctcctggggaggggggtactgggtagttcatattgttgttccacc
tatagagttgcagatccctttagctcattggttactttctctagctcctc
cgtgagagccctgtgatccatccaatagctgactgtgagcatcacttccc
tgtttgctaggcccagcagtctcacagagacactatatctgggtctttca
gcaaatcttgccatgtatgcatgtgtcaggcttggagctgaataatggga
tgcatccgaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_126311588_126311696
seq2: B6Ng01-012A03.b_171_486

seq1  ACACACACACACACACACACACACACACACACACACACATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACATATATATATAT  50

seq1  ATATATAT----------------ATATATATCACTGAAG---GGCTTGA  81
      || || ||                ||||| || | | |||     | | |
seq2  ATTTAGATTCTGTAGTTTGGTGGAATATAGAT-ATTTAAGTATACCATTA  99

seq1  GGTATTTTTTGTGCAAACACCCCCCCCC----------------------  109
       | ||| ||||    ||||      | |                      
seq2  TG-ATTCTTTG----AACA----TTCTCTGGTCTTGCTGTTCCTTAGCGC  140

seq1  --------------------------------------------------  109
                                                        
seq2  AGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGAGAG  190

seq1  --------------------------------------------------  109
                                                        
seq2  AGAAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGGGGGGGGAGTG  240

seq1  --------------------------------------------------  109
                                                        
seq2  AGAGGGGGGGGGGAGAGCGACCTATCCATCCGAAAACGCCCCCATTTAAC  290

seq1  --------------------------  109
                                
seq2  TTTTGGGGGGGCAAACACCCCCCCCC  316

seq1: chr4_89695046_89696121
seq2: B6Ng01-012A03.g_67_1129

seq1  GAATTCTTTCAGTTCATATGATTTGTAGAATGTAAACAATGGATTTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGTTCATATGATTTGTAGAATGTAAACAATGGATTTGAAC  50

seq1  ATATGATGACTTGGAACGGTATAGATACACTAAGGCCTTGAAGAAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGACTTGGAACGGTATAGATACACTAAGGCCTTGAAGAAAGAGA  100

seq1  AGAGAGATGAGACAGGAGAGATGTGAGCACGCAGAAGATAGGATCAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGATGAGACAGGAGAGATGTGAGCACGCAGAAGATAGGATCAGGGT  150

seq1  GACCTCTACACACTTTAATGTAGAGTGAACTGCTCTTTTAAATGCTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTACACACTTTAATGTAGAGTGAACTGCTCTTTTAAATGCTTTAT  200

seq1  TTTTCTTTTTAATCTCAAGATTTACATAAAGAAACTTATATTTGTATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTAATCTCAAGATTTACATAAAGAAACTTATATTTGTATTTA  250

seq1  GATATAGTAGTTTGGTTTCAATGACAGAGGAGGATATTGTATTTTGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGTAGTTTGGTTTCAATGACAGAGGAGGATATTGTATTTTGATGA  300

seq1  CAGCCCAAATACTATAAATTTAAATAGATCAACAACCCAGTAGGATTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAAATACTATAAATTTAAATAGATCAACAACCCAGTAGGATTCCA  350

seq1  GAGGTCCAGGACTTGGGGATGAATCTTTCCTCCCTTGATTGACTTTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCAGGACTTGGGGATGAATCTTTCCTCCCTTGATTGACTTTCAAA  400

seq1  TTCATCTCAATATATTGATGACATGAAACATTATTTTGACATGTTTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCAATATATTGATGACATGAAACATTATTTTGACATGTTTGGAG  450

seq1  AATGCGGGGAGTTATACTGATGATTTGAATGACTCAGTAGACTACAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGGGGAGTTATACTGATGATTTGAATGACTCAGTAGACTACAACTA  500

seq1  ACCCCATCACATAAAGATTCTCTATATTAGGAAAGATTATATATCTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATCACATAAAGATTCTCTATATTAGGAAAGATTATATATCTGTCT  550

seq1  ATAACCACTGATTTAGATAATTTCTATTTTTGTTTTCTTTTTTCTATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCACTGATTTAGATAATTTCTATTTTTGTTTTCTTTTTTCTATTAG  600

seq1  GTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGTGCCCCACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAGTGCCCCACATG  650

seq1  CTCCCCCACCCACTCCCCCACCCACCCACTCCCACTTCTTGGCCCTGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCACCCACTCCCCCACCCACCCACTCCCACTTCTTGGCCCTGGTG  700

seq1  TTCCCCTGTACTGAAGCAGATAAAGTTTGCATGAACAATGGGCCTCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGTACTGAAGCAGATAAAGTTTGCATGAACAATGGGCCTCTCTT  750

seq1  TCCACTGATTGCCAACTAGGCCATCTTCTGATTCATATGCATCTAGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGATTGCCAACTAGGCCATCTTCTGATTCATATGCATCTAGAGAC  800

seq1  ACAAGCTCCTGGGGAGGGGGGTACTGGGTAGTTCATATTGTTGTTCCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTCCTGGGGAGGGGGGTACTGGGTAGTTCATATTGTTGTTCCACC  850

seq1  TATAGAGTTGCAGATCCCTTTAGCTCATTGGTTACTTTCTCTAGCTCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGTTGCAGATCCCTTTAGCTCATTGGTTACTTTCTCTAGCTCCTC  900

seq1  CGTTGAGAGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTC  950
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CG-TGAGAGCCCTGTGATCCATCCAATAGCTGACTGTGAGCAT-CACTTC  948

seq1  CCTGTTTGCTAGGCCCCAGCAGTCTCACAAGAGACAACTATATCTGGGTC  1000
      ||||||||||||| |||||||||||||| |||||| ||||||||||||| 
seq2  CCTGTTTGCTAGG-CCCAGCAGTCTCAC-AGAGAC-ACTATATCTGGGT-  994

seq1  CTTTCAGCAAAATCTTGCCAGTGTATGCAATGGTGTCAGGGTTTGGAGGC  1050
      |||||||| ||||||||||| ||||||||   |||||| || ||||| ||
seq2  CTTTCAGC-AAATCTTGCCA-TGTATGCA--TGTGTCA-GGCTTGGA-GC  1038

seq1  TG-ATTATGGGATGGATCCCGGAATAT  1076
      || || |||||||| ||||  ||||||
seq2  TGAATAATGGGATGCATCC--GAATAT  1063