BAC Information

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BAC

Clone NameB6Ng01-012B20
Chromosome4 (Build37)6 (Build37)
Map Location 151,310,927 - 151,311,25068,959,306 - 68,960,462
singlet/doubletsingletsinglet
Overlap geneDnajc11
Upstream geneTnfrsf9, Uts2, Per3, Vamp3, Camta1, LOC100041960
Downstream geneThap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012B20.bB6Ng01-012B20.g
ACCDH847294DH847295
length1,0011,142
definitionDH847294|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B20, 5' end.DH847295|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(151,310,927 - 151,311,250)(68,959,306 - 68,960,462)
sequence
gaattcaaagatctgccggcacacgcctttaatcctatcacttgggaggc
agaggcaggcagatttctgagttcgaggccagcctggactacagagtgag
ttccaggtcagccagtgctacacagagaaaccctgtctcgaaaaaccaaa
aaaagaaaaaaaaaaaaagaaaaaaaaaggaaaaaaaagatttcaaaggt
ctacctctgttaagcgtagacaataagataactgggtagggcctgtcttg
aaatgactttttctacctcacctagatctaataaattagctctgtctgca
gcttatcttgaactcaggaatctgcccttgtaaacacaaactgatttagc
tgggtgggatctcctggggtcaccactccctaaattcctttatctccttc
cctagtgtctttctgacaagttggctcatagtgtaactgcctttgttcct
tcagttcatgaagcccctcttataattcattgcatccttattttttgaga
aattatatatatttgaactcatatttttagagttatttttcacagcttta
agggctgtcctgaaggccccggtgtttaccataaaacattagccacacct
ttgcctcatttctgattatcctggagtcatctttaacagggaggacattc
cttagaggaggaatgtaaaatatgcacactttcatccaaaccttatgccc
atggcagccttggacactagctcacatccattggccctgtcccaggggca
ggaaccatgtcattctgtccccaccacagtcttgccaggcttggcacatt
catgtataagtgaatgcaacccgttttgtctttttgggtctgggttaact
cattcagaatgaattttttcctttattttaaatcttttatgtttttactt
ctcttgaggcaggaggtcacaagtggggaagaacatgaggattgggaaag
gaatgtgattggatgcatgtgaatttccagagataataaactgcgtgtag
a
gaattctatatccaggaaaaaataattcttctcctaaaattcttttcatt
taaatttataattcaaacacacacacacacacacacacacacacacacac
acacaaaccatgtggacacaaagaagcatacataatcaatgtacacacac
atacatacacacaaaccatatatcctaaatagaactattgttatattgta
gatatgaaaaagagcaatgccttaatctagtgttctgataccttggttgt
gtataatacgaacaaaagaaaactgtctaatgaaaagattcatcacaatt
attaaacaagggttcttattcaagcatgtaccaaggaatattaggaaagc
tcagtatttactaacactattggcttcatttatggtgtagtgagattagt
atcttaaacactagctagagagtttaaaaatcattgcaaatcaacatgta
tatatctacatggcagactacaatgacaaaaactctcagggcattggtat
atacacagggcataaagaaaaatacataagtaaataaaaaacaaagttca
aaataagttttctcttactagcttatgatggttggtcccactacaatgtg
gaataaatgtttatattcacctacaaaagcactcacccaacacacagtta
tttcatggcaattttaaattcattattagaaaagtagactaaattatatt
tattccatacctctgtagcctggacatcacaatctcatattcttaaagaa
aagcttccattatttcataattccagaatttcatgaaaattcacagaaca
gtaagccttaggcataacctcaacccatctaatgtataatatttgtcttt
catttgagagaacacaacccctattttattactattgattttttctaaag
gtgtccatctactaagacagatgaaaaatagaaagaatattaactacaaa
tgatccacgacttctaacccttgaagggacctctgatttcacttgactgt
gtgtacacgaggagttacgagcattccttggttctgctgataatcaagct
aatatatagtaatctctaactgtcatgcatagttgtgactctgtacatat
gcaaataataagaatggggattggatcaacttgatgcaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_151310927_151311250
seq2: B6Ng01-012B20.b_75_234 (reverse)

seq1  TCTTTTTATAGATTTTTTTTTCTTTTAGACTTGTTTGAGTGCTATGCATG  50
                                                        
seq2  --------------------------------------------------  0

seq1  AATGCAAATATATGCGCTGTATGCATTCCTATGAATAGTTGTGAGCTATT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGGAGGCGAGGAACTGAACCTCAGTCATGTGCAAGAACAGCAAGTGTGCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAACTACTGAGCTATTTCTAAGGCCCTTTTTATAGAATTCTTTTTTTTTT  200
                 || ||| |     ||||||| |    || ||||||||| 
seq2  ----------TCTTTTTTT----TCCTTTTTTTTTCTTTTTTTTTTTTTC  36

seq1  TTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  250
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  TTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCACTGGCTGACCT  86

seq1  AGAACTCACTTTGTAAACCAGGCTGGCCTCGAATTCAGAAATCTGCCTGC  300
       ||||||||| ||||  |||||||||||||||| ||||||||||||||||
seq2  GGAACTCACTCTGTAGTCCAGGCTGGCCTCGAACTCAGAAATCTGCCTGC  136

seq1  CTCTGCCTCCCGAGTGCTAGGATT  324
      ||||||||||| |||| |||||||
seq2  CTCTGCCTCCCAAGTGATAGGATT  160

seq1: chr6_68959306_68960462
seq2: B6Ng01-012B20.g_63_1204 (reverse)

seq1  ATATTTGGCATCAAGTTGATCCAATCCCCATCCTACTCATCTGCATATGT  50
      |||||  |||||||||||||||||||||||| ||  | || |||||||||
seq2  ATATT--GCATCAAGTTGATCCAATCCCCATTCTTATTATTTGCATATGT  48

seq1  ACAGGAGTCACCATTAATTGCATGACAAGTTAGGAGATTACTATATTATT  100
      ||| ||||||| | ||  |||||||| ||||| |||||||||||| ||||
seq2  ACA-GAGTCACAACTA--TGCATGAC-AGTTA-GAGATTACTATA-TATT  92

seq1  AGCTTGA-TATCAGCAGAAACCAAGGAATGCTCGTAAACTCCTCGTGTAC  149
      ||||||| ||||||||| ||||||||||||||||| ||||||||||||| 
seq2  AGCTTGATTATCAGCAG-AACCAAGGAATGCTCGT-AACTCCTCGTGTA-  139

seq1  CACACAGTCAGGTTGAAATCAGGGGTCCCTTCAAGGGTTAGAAGTCGTGG  199
      |||||||||| | ||||||||| |||||||||||||||||||||||||||
seq2  CACACAGTCAAG-TGAAATCAGAGGTCCCTTCAAGGGTTAGAAGTCGTGG  188

seq1  ATCATTTTGTAGTTTAATATTCTTTTCTATTTTTTCATCTGTCTTAGTAG  249
      |||| ||||||| ||||||||| |||||| ||||||||||||||||||||
seq2  ATCA-TTTGTAG-TTAATATTC-TTTCTA-TTTTTCATCTGTCTTAGTAG  234

seq1  ATGGACACCTTTAGAAAAAATCAATAGTAATAAAATAGGGGTTGTGTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACACCTTTAGAAAAAATCAATAGTAATAAAATAGGGGTTGTGTTCT  284

seq1  CTCAAATGAAAGACAAATATTATACATTAGATGGGTTGAGGTTATGCCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATGAAAGACAAATATTATACATTAGATGGGTTGAGGTTATGCCTA  334

seq1  AGGCTTACTGTTCTGTGAATTTTCATGAAATTCTGGAATTATGAAATAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTACTGTTCTGTGAATTTTCATGAAATTCTGGAATTATGAAATAAT  384

seq1  GGAAGCTTTTCTTTAAGAATATGAGATTGTGATGTCCAGGCTACAGAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTTTCTTTAAGAATATGAGATTGTGATGTCCAGGCTACAGAGGT  434

seq1  ATGGAATAAATATAATTTAGTCTACTTTTCTAATAATGAATTTAAAATTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATAAATATAATTTAGTCTACTTTTCTAATAATGAATTTAAAATTG  484

seq1  CCATGAAATAACTGTGTGTTGGGTGAGTGCTTTTGTAGGTGAATATAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAATAACTGTGTGTTGGGTGAGTGCTTTTGTAGGTGAATATAAAC  534

seq1  ATTTATTCCACATTGTAGTGGGACCAACCATCATAAGCTAGTAAGAGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCCACATTGTAGTGGGACCAACCATCATAAGCTAGTAAGAGAAA  584

seq1  ACTTATTTTGAACTTTGTTTTTTATTTACTTATGTATTTTTCTTTATGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTTGAACTTTGTTTTTTATTTACTTATGTATTTTTCTTTATGCC  634

seq1  CTGTGTATATACCAATGCCCTGAGAGTTTTTGTCATTGTAGTCTGCCATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATATACCAATGCCCTGAGAGTTTTTGTCATTGTAGTCTGCCATG  684

seq1  TAGATATATACATGTTGATTTGCAATGATTTTTAAACTCTCTAGCTAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATATACATGTTGATTTGCAATGATTTTTAAACTCTCTAGCTAGTG  734

seq1  TTTAAGATACTAATCTCACTACACCATAAATGAAGCCAATAGTGTTAGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATACTAATCTCACTACACCATAAATGAAGCCAATAGTGTTAGTA  784

seq1  AATACTGAGCTTTCCTAATATTCCTTGGTACATGCTTGAATAAGAACCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGAGCTTTCCTAATATTCCTTGGTACATGCTTGAATAAGAACCCT  834

seq1  TGTTTAATAATTGTGATGAATCTTTTCATTAGACAGTTTTCTTTTGTTCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATAATTGTGATGAATCTTTTCATTAGACAGTTTTCTTTTGTTCG  884

seq1  TATTATACACAACCAAGGTATCAGAACACTAGATTAAGGCATTGCTCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATACACAACCAAGGTATCAGAACACTAGATTAAGGCATTGCTCTTT  934

seq1  TTCATATCTACAATATAACAATAGTTCTATTTAGGATATATGGTTTGTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCTACAATATAACAATAGTTCTATTTAGGATATATGGTTTGTGT  984

seq1  GTATGTATGTGTGTGTACATTGATTATGTATGCTTCTTTGTGTCCACATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGTGTGTGTACATTGATTATGTATGCTTCTTTGTGTCCACATG  1034

seq1  GTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAATTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAATTA  1084

seq1  TAAATTTAAATGAAAAGAATTTTAGGAGAAGAATTATTTTTTCCTGGATA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAAATGAAAAGAATTTTAGGAGAAGAATTATTTTTTCCTGGATA  1134

seq1  TAGAATTC  1157
      ||||||||
seq2  TAGAATTC  1142