BAC Information

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BAC

Clone NameB6Ng01-012F02
Chromosome4 (Build37)
Map Location 67,549,603 - 67,717,106
singlet/doubletdoublet
Overlap geneLOC433715
Upstream geneLOC100039379, Hmgb1-rs18
Downstream geneTcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012F02.bB6Ng01-012F02.g
ACCDH847446DH847447
length1,159430
definitionDH847446|Mus musculus domesticus DNA, BAC clone: B6Ng01-012F02, 5' end.DH847447|Mus musculus domesticus DNA, BAC clone: B6Ng01-012F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,715,924 - 67,717,106)(67,549,603 - 67,550,038)
sequence
gaattcactaatttggtaactcagtaatttttaagtgctcaagttacaaa
cacataaccacacataattgttttagcttaaaaactgaacaaatattcct
gaaatgtattgtttgtatctttgcataagctgtacatattgttgagcctc
agcagcctgatgtgtttaagaattaagtgctagtgattgaccaagctatt
atactatttgtattaattttagcattgtaattcatgcaggaattcctatg
aatgcttcttcattgtcatcttccacatctggtaatttgtccatgaacta
gaagacacagaatttagtaaattacagttaactctgactctatgagaatc
catttcaaataatattctgagtgttttttacaactaagatcaaccttaca
acaaacacattgtagacattcctctgcactctattttacaaattggaatg
gaaatgtagagtttaaaatttactagtggttcgataacatcatatggtaa
cttctcacaagagatgaaattagtgcgcaaagacagtgcattattgtctt
tggtgtgaaaactgaactcatgtgtttcttcacgaatttagaaaagaatt
ttcactttgacattatcagtgtaacaaggtagaacacaacaccaagcaaa
agctaatgagcatttgccaagtgaaaacatgtacagatgtaagaatgagc
actattgccgaggatacccgcaaaacagaaaatcaggccaatagtgtcat
gagacgtttgtctctatctacacaaacaacaatgctgccttttacaaggc
tacttcttcttttcacatgtctggtttgcactactgaagagcaagtacga
tgtcaaaattaatcctgcaggtaacattcatgatagctattttattttaa
tgcttctaaataagtagcaaacttctaaaaattatattccttagatataa
cttgatattggaggaaagacttcttggcacttgcctaataacactggaag
cattaaaactaaagttttcttttttttctcgaaatcacatttcatgcgca
gctgtgagttatttgtttgtcagtcgcccagtggagtatatcttggctta
tatcctatgcacttctcagtcttgttatagcactttaacacggtcagcct
atattaaga
agtattagaaataaaacccacaaaactgagtccataaaatggagatgata
ataaaataaaaatgaatttaataattgtagtctcaagtagaagaaataca
aaattgatgagaattactgacaatattttgaaagatgtacatgagaatga
aaaaggaaatgaaaattaacaaaaataaaatattttgtgacagatgctga
agataagcaagtattcaataaatattgcaatgacataggagatagtatct
ttgaggcatcatgagtaatgagtaatgaaagtggtaactcaactgaactt
tcttgatattaaaaaagaattaaatatatatatatatatattgaaaatgc
ttaatacacagaaaagagaatcaactcagtaagaccataacatagtattc
agtgtgtgtttgtgtggtgtgtagtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67715924_67717106
seq2: B6Ng01-012F02.b_46_1204 (reverse)

seq1  TCTTAATATTAGCCTGACTGTTGTTATAAGTGCTATAACAAAGGGACTGA  50
      |||||||| ||| ||||| | ||||| ||||||||||||||   ||||||
seq2  TCTTAATA-TAGGCTGACCG-TGTTA-AAGTGCTATAACAA---GACTGA  44

seq1  GAAAGTGCAATAGGGATATAAAGCAAAGATATTAACTCCAACTGGGCGAA  100
      | |||||| ||| |||||| |||| |||||||  ||||| |||||||| |
seq2  G-AAGTGC-ATA-GGATAT-AAGCCAAGATAT--ACTCC-ACTGGGCG-A  86

seq1  CTTGAACAAACAAATAAACTCCACAGCTGGCGCAATGAAATGTGATTTCG  150
      ||   |||||||||| |||| ||||||| |||| ||||||||||||||||
seq2  CT--GACAAACAAAT-AACT-CACAGCT-GCGC-ATGAAATGTGATTTCG  130

seq1  AGGAAAAAAAAGAAAACTTTAGTTTTAATTGCTTCCAGTGTTATTAGGCA  200
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  A-GAAAAAAAAGAAAACTTTAGTTTTAA-TGCTTCCAGTGTTATTAGGCA  178

seq1  AGTTGCCAAGAAGTCTTTCCTCCAATATCAAGTTATATCTAAGGAATATA  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TGCCAAGAAGTCTTTCCTCCAATATCAAGTTATATCTAAGGAATATA  227

seq1  ATTTTTAGAAGTTTTGCTACTTATTTAGAAGCATTAAAATAAAATAGCTA  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGAAG-TTTGCTACTTATTTAGAAGCATTAAAATAAAATAGCTA  276

seq1  TCATGAATGTTACCTGCAGGATTAATTTTGACATCGTACTTGCTCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATGTTACCTGCAGGATTAATTTTGACATCGTACTTGCTCTTCAG  326

seq1  TAGTGCAAACCAGACATGTGAAAAGAAGAAGTAGCCTTGTAAAAGGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAAACCAGACATGTGAAAAGAAGAAGTAGCCTTGTAAAAGGCAGC  376

seq1  ATTGTTGTTTGTGTAGATAGAGACAAACGTCTCATGACACTATTGGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTTGTGTAGATAGAGACAAACGTCTCATGACACTATTGGCCTG  426

seq1  ATTTTCTGTTTTGCGGGTATCCTCGGCAATAGTGCTCATTCTTACATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTTTTGCGGGTATCCTCGGCAATAGTGCTCATTCTTACATCTG  476

seq1  TACATGTTTTCACTTGGCAAATGCTCATTAGCTTTTGCTTGGTGTTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTTTCACTTGGCAAATGCTCATTAGCTTTTGCTTGGTGTTGTGT  526

seq1  TCTACCTTGTTACACTGATAATGTCAAAGTGAAAATTCTTTTCTAAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTGTTACACTGATAATGTCAAAGTGAAAATTCTTTTCTAAATTC  576

seq1  GTGAAGAAACACATGAGTTCAGTTTTCACACCAAAGACAATAATGCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAAACACATGAGTTCAGTTTTCACACCAAAGACAATAATGCACTG  626

seq1  TCTTTGCGCACTAATTTCATCTCTTGTGAGAAGTTACCATATGATGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCGCACTAATTTCATCTCTTGTGAGAAGTTACCATATGATGTTAT  676

seq1  CGAACCACTAGTAAATTTTAAACTCTACATTTCCATTCCAATTTGTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCACTAGTAAATTTTAAACTCTACATTTCCATTCCAATTTGTAAAA  726

seq1  TAGAGTGCAGAGGAATGTCTACAATGTGTTTGTTGTAAGGTTGATCTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGCAGAGGAATGTCTACAATGTGTTTGTTGTAAGGTTGATCTTAG  776

seq1  TTGTAAAAAACACTCAGAATATTATTTGAAATGGATTCTCATAGAGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAAACACTCAGAATATTATTTGAAATGGATTCTCATAGAGTCAG  826

seq1  AGTTAACTGTAATTTACTAAATTCTGTGTCTTCTAGTTCATGGACAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTGTAATTTACTAAATTCTGTGTCTTCTAGTTCATGGACAAATT  876

seq1  ACCAGATGTGGAAGATGACAATGAAGAAGCATTCATAGGAATTCCTGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGTGGAAGATGACAATGAAGAAGCATTCATAGGAATTCCTGCAT  926

seq1  GAATTACAATGCTAAAATTAATACAAATAGTATAATAGCTTGGTCAATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACAATGCTAAAATTAATACAAATAGTATAATAGCTTGGTCAATCA  976

seq1  CTAGCACTTAATTCTTAAACACATCAGGCTGCTGAGGCTCAACAATATGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTTAATTCTTAAACACATCAGGCTGCTGAGGCTCAACAATATGT  1026

seq1  ACAGCTTATGCAAAGATACAAACAATACATTTCAGGAATATTTGTTCAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTATGCAAAGATACAAACAATACATTTCAGGAATATTTGTTCAGT  1076

seq1  TTTTAAGCTAAAACAATTATGTGTGGTTATGTGTTTGTAACTTGAGCACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGCTAAAACAATTATGTGTGGTTATGTGTTTGTAACTTGAGCACT  1126

seq1  TAAAAATTACTGAGTTACCAAATTAGTGAATTC  1183
      |||||||||||||||||||||||||||||||||
seq2  TAAAAATTACTGAGTTACCAAATTAGTGAATTC  1159

seq1: chr4_67549603_67550038
seq2: B6Ng01-012F02.g_65_500

seq1  GAATTCAGTATTAGAAATAAAACCCACAAAACTGAGTCCATAAAATGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATTAGAAATAAAACCCACAAAACTGAGTCCATAAAATGGAG  50

seq1  ATGATAATAAAATAAAAATGAATTTAATAATTGTAGTCTCAAGTAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATAAAATAAAAATGAATTTAATAATTGTAGTCTCAAGTAGAAGA  100

seq1  AATACAAAATTGATGAGAATTACTGACAATATTTTGAAAGATGTACATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAATTGATGAGAATTACTGACAATATTTTGAAAGATGTACATGA  150

seq1  GAATGAAAAAGGAAATGAAAATTAACAAAAATAAAATATTTTGTGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAAAGGAAATGAAAATTAACAAAAATAAAATATTTTGTGACAGA  200

seq1  TGCTGAAGATAAGCAAGTATTCAATAAATATTGCAATGACATAGGAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAGATAAGCAAGTATTCAATAAATATTGCAATGACATAGGAGATA  250

seq1  GTATCTTTGAGGCATCATGAGTAATGAGTAATGAAAGTGGTAACTCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTGAGGCATCATGAGTAATGAGTAATGAAAGTGGTAACTCAACT  300

seq1  GAACTTTCTTGATATTAAAAAAGAATTAAATATATATATATATATATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCTTGATATTAAAAAAGAATTAAATATATATATATATATATTGA  350

seq1  AAATGCTTAATACACAGAAAAGAGAATCAACTCAGTAAGACCATAACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTAATACACAGAAAAGAGAATCAACTCAGTAAGACCATAACATA  400

seq1  GTATTCAGTGTGTGTTTGTGTGGTGTGTAGTGTGTG  436
      ||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGTGTGTGTTTGTGTGGTGTGTAGTGTGTG  436