BAC Information

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BAC

Clone NameB6Ng01-012G04
Chromosome4 (Build37)
Map Location 63,803,343 - 63,931,411
singlet/doubletdoublet
Overlap genenone
Upstream geneAmbp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genePappa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012G04.bB6Ng01-012G04.g
ACCDH847495DH847496
length1,1021,094
definitionDH847495|Mus musculus domesticus DNA, BAC clone: B6Ng01-012G04, 5' end.DH847496|Mus musculus domesticus DNA, BAC clone: B6Ng01-012G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,803,343 - 63,804,456)(63,930,315 - 63,931,411)
sequence
gaattccatagttgctggtgaggttaattgtgtatatacatgtgtgagca
gatcaatgtgccatgacgctccagcaagccaatgtctgcctcacttcaca
cccctgcagattgtgtaaggaatgtccagacactttctttttccagcatg
acgtaatgtggaatgagaagacctgcagaacatgcagcccatagccagac
agatgacctcactcccttcctgggcattcccaagctctgctgttacaaaa
gaacaacccccagactcacaatgtttggtccacaggtggtggttttagtc
ctcagtcttttgttggcaaattacttcaaatgatctccaagctcccctgt
ggctggcgggaggacagctctgacggatacagtctggcctattttttcag
ccaaatggaatgaattcagcccgaggataaaccaagacataaagggggat
aaatatgtttcagcatcagccacaaggagacaagctgtgaggagttagct
gtagtgatggggaagtttaaagaacaaagtaggaaacacgtttcatggat
cctaacaggctcaggttgttcttggggttgtttcaaagccttggaggctg
tagaaataatgttgccaatttctctcctatggctcatgttcatttaaagg
attccttttatttcatgcctgtgtgtatattaacatgattataactctga
tctacaggtatccagtcttctgtcatttataacagattttaaaaggctta
tcagcaaacatgagagcaggaaaataatctcctttgtatgtgaacaggct
ggggctcagagagaggagccaaacttaccgagatcatatggccaggaagc
accaaggcttgtcatggagcccagatggcagtaagttcaagtttggtttc
tatccaaccagatcaatgcgagacagaacagtggtatttcttagctgaaa
ggtctgtatcatcaacattcccacatctgtttctctctgatcactaccat
atacctactgagagctggagcagtctgggagataaatctatcagtccacc
tggtgtatagcgatcgatggcccctcagactatctatcctcccttcatgt
tg
gaattcataaattaatggatgtaaagcttgccacacacaaggactgttca
gtaaaacactatttgtgttatcaaatccttctgacctgtgtttatggatg
gaaagataagtgctttctcctgagctcaaggaggccagaattaggggcag
agaacctcagtctgtgggcacgtgaccctcagatggtgattcaggcagcc
tgaagctccagtgaattccctttgccttgggagggttccttgatggagtt
ctggtggtggcaaggagaagctgacaaatgagatgatttagtctgctcag
caaagtaaacgtggctccaggaagtgggaggtaactcagaagggaagcta
caaatgccactggggggagggaattttcctttccaaactcaatgtgtttg
cacttggactgctttatttcatcagcatgctctttggaacgtcggcttaa
atccatgaaaacgttttctctttttaagtttttccctttcctcctctcta
gttcctcaaatgcagaataataataataataatgaaacataagggaatct
agagaacgtccacccccacccaagaaaaacaacccaccagctcagcacaa
gtatgcatgtgtgtaaattgttggcaggaatgtagcttttgatgtaaagt
tgctaaaagaaactgaggggttgcagttaaatcgtttcctaaaatgatct
tgccattgataaatggccttccctttacaaaaaccctttatccaggtcag
tcctgactgaggctttccaagattcccccatttcagcctcaggaggaagg
aaatagaacttcatctacaacgtccagaaggtttttccatcaagggtccc
agttgctgcctattctctgctcacagattagggaaagtgacctttccttc
ctacctttaccaacatgggcagggtgggggcccaaaggcagacattttga
agagcttcttctcttgttatatggaaatttctttcaagacaatgatcagt
aagccagcaagctctgcttgcactggctcatggaaagcttctgcggtgat
gtaatctccccagaccagagcagcttactcagaacaagctcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_63803343_63804456
seq2: B6Ng01-012G04.b_44_1145

seq1  GAATTCCATAGTTGCTGGTGAGGTTAATTGTGTATATACATGTGTGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGTTGCTGGTGAGGTTAATTGTGTATATACATGTGTGAGCA  50

seq1  GATCAATGTGCCATGACGCTCCAGCAAGCCAATGTCTGCCTCACTTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATGTGCCATGACGCTCCAGCAAGCCAATGTCTGCCTCACTTCACA  100

seq1  CCCCTGCAGATTGTGTAAGGAATGTCCAGACACTTTCTTTTTCCAGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCAGATTGTGTAAGGAATGTCCAGACACTTTCTTTTTCCAGCATG  150

seq1  ACGTAATGTGGAATGAGAAGACCTGCAGAACATGCAGCCCATAGCCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAATGTGGAATGAGAAGACCTGCAGAACATGCAGCCCATAGCCAGAC  200

seq1  AGATGACCTCACTCCCTTCCTGGGCATTCCCAAGCTCTGCTGTTACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACCTCACTCCCTTCCTGGGCATTCCCAAGCTCTGCTGTTACAAAA  250

seq1  GAACAACCCCCAGACTCACAATGTTTGGTCCACAGGTGGTGGTTTTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACCCCCAGACTCACAATGTTTGGTCCACAGGTGGTGGTTTTAGTC  300

seq1  CTCAGTCTTTTGTTGGCAAATTACTTCAAATGATCTCCAAGCTCCCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTTTTGTTGGCAAATTACTTCAAATGATCTCCAAGCTCCCCTGT  350

seq1  GGCTGGCGGGAGGACAGCTCTGACGGATACAGTCTGGCCTATTTTTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCGGGAGGACAGCTCTGACGGATACAGTCTGGCCTATTTTTTCAG  400

seq1  CCAAATGGAATGAATTCAGCCCGAGGATAAACCAAGACATAAAGGGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGGAATGAATTCAGCCCGAGGATAAACCAAGACATAAAGGGGGAT  450

seq1  AAATATGTTTCAGCATCAGCCACAAGGAGACAAGCTGTGAGGAGTTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTTTCAGCATCAGCCACAAGGAGACAAGCTGTGAGGAGTTAGCT  500

seq1  GTAGTGATGGGGAAGTTTAAAGAACAAAGTAGGAAACACGTTTCATGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATGGGGAAGTTTAAAGAACAAAGTAGGAAACACGTTTCATGGAT  550

seq1  CCTAACAGGCTCAGGTTGTTCTTGGGGTTGTTTCAAAGCCTTGGAGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAGGCTCAGGTTGTTCTTGGGGTTGTTTCAAAGCCTTGGAGGCTG  600

seq1  TAGAAATAATGTTGCCAATTTCTCTCCTATGGCTCATGTTCATTTAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAATGTTGCCAATTTCTCTCCTATGGCTCATGTTCATTTAAAGG  650

seq1  ATTCCTTTTATTTCATGCCTGTGTGTATATTAACATGATTATAACTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTTATTTCATGCCTGTGTGTATATTAACATGATTATAACTCTGA  700

seq1  TCTACAGGTATCCAGTCTTCTGTCATTTATAACAGATTTTAAAAGGCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGGTATCCAGTCTTCTGTCATTTATAACAGATTTTAAAAGGCTTA  750

seq1  TCAGCAAACATGAGAGCAGGAAAATAATCTCCTTTGTATGTGAACAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAACATGAGAGCAGGAAAATAATCTCCTTTGTATGTGAACAGGCT  800

seq1  GGGGCTCAGAGAGAGGAGCCAAACTTACCGAGATCATATGGCCAGGAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCAGAGAGAGGAGCCAAACTTACCGAGATCATATGGCCAGGAAGC  850

seq1  ACCAAGGCTTGTCATGGAGCCCAGATGGCAGTAAGTTCAAGTTTGGTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCTTGTCATGGAGCCCAGATGGCAGTAAGTTCAAGTTTGGTTTC  900

seq1  TATCCAACCAGATCAATGCGAGACAGAACAGGTGGTATTTCTTAGCTGAA  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATCCAACCAGATCAATGCGAGACAGAACA-GTGGTATTTCTTAGCTGAA  949

seq1  AGGTCTGTATTCATCAACATTCCCACATCTGTTTCTCTCTGATCAACTAC  1000
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  AGGTCTGTA-TCATCAACATTCCCACATCTGTTTCTCTCTGATC-ACTAC  997

seq1  CATATACCCTACTGAGAGCTGGAGCAGGTCTGGGAAGATAAATCTATCAA  1050
      |||||| ||||||||||||||||||| ||||||| |||||||||||||| 
seq2  CATATA-CCTACTGAGAGCTGGAGCA-GTCTGGG-AGATAAATCTATCAG  1044

seq1  GTCACCTGGGTGTTATAAGCGATCGATGGCCCACTCAGGACTATCTATCC  1100
        ||||| |||| ||| ||||||||||||||| |||| ||||||||||||
seq2  TCCACCT-GGTG-TAT-AGCGATCGATGGCCC-CTCA-GACTATCTATCC  1089

seq1  TTCCCTTCATGTTG  1114
       |||||||||||||
seq2  -TCCCTTCATGTTG  1102

seq1: chr4_63930315_63931411
seq2: B6Ng01-012G04.g_63_1156 (reverse)

seq1  TCTGAGCTGGTCTGGAGTAAGCTGGTTCTGGTCTGGGGAGATTACATCAC  50
      |||||||| ||   ||||||||| | ||||||||||||||||||||||||
seq2  TCTGAGCTTGTTCTGAGTAAGCT-GCTCTGGTCTGGGGAGATTACATCAC  49

seq1  CGCAG-AGCTTTCCATGGGCCAGTGCAAGCAGGGCCTGCTGGCTTACTGA  99
      ||||| ||||||||||| |||||||||||||| || ||||||||||||||
seq2  CGCAGAAGCTTTCCATGAGCCAGTGCAAGCAGAGCTTGCTGGCTTACTGA  99

seq1  TCATTGTCTTTTGAAAGAAA-TTCCATATAACAAGGAGAGAAGCTCCTTC  148
      ||||||||  |||||||||| ||||||||||||||   ||||||| ||||
seq2  TCATTGTC--TTGAAAGAAATTTCCATATAACAAGAGAAGAAGCT-CTTC  146

seq1  AAAATTGTCTGCCTTTGGGCCCCCACCCTGCCCATGTTGGTAAAGGTAGG  198
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAA-TGTCTGCCTTTGGGCCCCCACCCTGCCCATGTTGGTAAAGGTAGG  195

seq1  AAGGAAAGGTCACTTTCCCTAATCTGTGAGCAGAGAATAGGCAGCAACTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGGTCACTTTCCCTAATCTGTGAGCAGAGAATAGGCAGCAACTG  245

seq1  GGACCCTTGATGGAAAAACCTTCTGGACGTTGTAGATGAAGTTCTATTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTTGATGGAAAAACCTTCTGGACGTTGTAGATGAAGTTCTATTTC  295

seq1  CTTCCTCCTGAGGCTGAAATGGGGGAATCTTGGAAAGCCTCAGTCAGGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTGAGGCTGAAATGGGGGAATCTTGGAAAGCCTCAGTCAGGAC  345

seq1  TGACCTGGATAAAGGGTTTTTGTAAAGGGAAGGCCATTTATCAATGGCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGGATAAAGGGTTTTTGTAAAGGGAAGGCCATTTATCAATGGCAA  395

seq1  GATCATTTTAGGAAACGATTTAACTGCAACCCCTCAGTTTCTTTTAGCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTTTAGGAAACGATTTAACTGCAACCCCTCAGTTTCTTTTAGCAA  445

seq1  CTTTACATCAAAAGCTACATTCCTGCCAACAATTTACACACATGCATACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATCAAAAGCTACATTCCTGCCAACAATTTACACACATGCATACT  495

seq1  TGTGCTGAGCTGGTGGGTTGTTTTTCTTGGGTGGGGGTGGACGTTCTCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAGCTGGTGGGTTGTTTTTCTTGGGTGGGGGTGGACGTTCTCTA  545

seq1  GATTCCCTTATGTTTCATTATTATTATTATTATTCTGCATTTGAGGAACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTTATGTTTCATTATTATTATTATTATTCTGCATTTGAGGAACT  595

seq1  AGAGAGGAGGAAAGGGAAAAACTTAAAAAGAGAAAACGTTTTCATGGATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGGAAAGGGAAAAACTTAAAAAGAGAAAACGTTTTCATGGATT  645

seq1  TAAGCCGACGTTCCAAAGAGCATGCTGATGAAATAAAGCAGTCCAAGTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCGACGTTCCAAAGAGCATGCTGATGAAATAAAGCAGTCCAAGTGC  695

seq1  AAACACATTGAGTTTGGAAAGGAAAATTCCCTCCCCCCAGTGGCATTTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTGAGTTTGGAAAGGAAAATTCCCTCCCCCCAGTGGCATTTGT  745

seq1  AGCTTCCCTTCTGAGTTACCTCCCACTTCCTGGAGCCACGTTTACTTTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCTTCTGAGTTACCTCCCACTTCCTGGAGCCACGTTTACTTTGC  795

seq1  TGAGCAGACTAAATCATCTCATTTGTCAGCTTCTCCTTGCCACCACCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGACTAAATCATCTCATTTGTCAGCTTCTCCTTGCCACCACCAGA  845

seq1  ACTCCATCAAGGAACCCTCCCAAGGCAAAGGGAATTCACTGGAGCTTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATCAAGGAACCCTCCCAAGGCAAAGGGAATTCACTGGAGCTTCAG  895

seq1  GCTGCCTGAATCACCATCTGAGGGTCACGTGCCCACAGACTGAGGTTCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGAATCACCATCTGAGGGTCACGTGCCCACAGACTGAGGTTCTC  945

seq1  TGCCCCTAATTCTGGCCTCCTTGAGCTCAGGAGAAAGCACTTATCTTTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTAATTCTGGCCTCCTTGAGCTCAGGAGAAAGCACTTATCTTTCC  995

seq1  ATCCATAAACACAGGTCAGAAGGATTTGATAACACAAATAGTGTTTTACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAACACAGGTCAGAAGGATTTGATAACACAAATAGTGTTTTACT  1045

seq1  GAACAGTCCTTGTGTGTGGCAAGCTTTACATCCATTAATTTATGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTCCTTGTGTGTGGCAAGCTTTACATCCATTAATTTATGAATTC  1094