BAC Information

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BAC

Clone NameB6Ng01-013F09
Chromosome4 (Build37)4 (Build37)
Map Location 14,996,448 - 14,997,6258,331,284 - 8,331,817
singlet/doubletsingletsinglet
Overlap geneEfcbp1
Upstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551
Downstream geneTmem64, LOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013F09.bB6Ng01-013F09.g
ACCDH848179DH848180
length1,165530
definitionDH848179|Mus musculus domesticus DNA, BAC clone: B6Ng01-013F09, 5' end.DH848180|Mus musculus domesticus DNA, BAC clone: B6Ng01-013F09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,996,448 - 14,997,625)(8,331,284 - 8,331,817)
sequence
gaattcttaatatcatggaaaatatttatattaaaaattgtataaacata
aaccagaagtaaattgaccatatccgtatgtattggtcaaaatttatttt
ttttaatggcttgaaagaagtgaatgaatatggtaacagtgagcccacac
tgttcctgtatgtcagaacttcatagaggcttgtttcttcctttgtacct
ttctaaaatattgttgtctattaccattacctttccccttgaatgtaaat
aatgcattttgtgatttgactgaaagaagtcaggaaaagtaaggtattaa
gggtaacaagtaagctcatattcatagtttctctgtaaatactatgtgct
tgccgatgagcctacttagtagagatggcatccagtctgtccatttggct
ttgtccttgatttaacaaactgacatttaacattctgtgtagaataaaca
gtggcatacaaggcaatatttcatggcaatcatgtacaaccctgaaggta
ctggaagttgcactctactgtgttattctgggcactctaaactctgagga
aaccagctttctgtcttaagaagtacttttgacactcaccagggctctgc
agtctagtaacttaagatccccagttctcaatttaggttacgctccagaa
aaaattttatattcagattaacattcttctcctcttactatctcttctag
gtattttcttacaaatttgcctgcattttagaccaaaactatgaacaaag
gattgtgactgtctcattagaattctaaatttctcctttgctgtttatga
ttatgctcatttctttatagtagcctccctttcaaacctcagttttcaca
tcctatgtatctttgttgcaatcattaaattccaggttcatacaagaaaa
tgaactcacctaatggtgaagccaattaaacacagacggtttttaatgca
taaatatgtctgatatatggaagattagccagagtagaaagcagatattc
tcaagctacaagttattgatttattcagccatgacaaactattatttcct
ctgtgcatgtagtgagcagtttgtatctcaagaatactaactacctcctt
gccctcgttgtctttaagattaaaaaacacctcgagatgggtatcaatcc
acactgaatcaatca
cttatctttccaagacttttatcatgaatgggtgttggatcttgtcaaat
gctttctccacatctaaggagatgatcatgtggtttttgtctttgagttt
gtttatataatagattatgttgatggatttctgtatattaaaccatccct
gcatccctggaataaaacctacttggtcaggatggatgattgctttaatg
tgttcttggatttggttagcgagaattttattgagtatttttgcattgat
attcataagggaaattggtctgaagttctctatctttgttggatctttct
gtggtttaggtatcagagtaatttgtggcttcatagaatgagttgggtag
agtaccttctacttctattttgtggaaaagtttgtgcagaactggaacta
gatcttctttgaaggtctgatagaactctgcactaaacccatctggttgt
gggctttttttggctgggagactattaatggctgcttctattttctttag
gggatatgggactgtttagatcattaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_14996448_14997625
seq2: B6Ng01-013F09.b_45_1209

seq1  GAATTCTTAATATCATGGAAAATATTTATATTAAAAATTGTATAAACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATATCATGGAAAATATTTATATTAAAAATTGTATAAACATA  50

seq1  AACCAGAAGTAAATTGACCATATCCGTATGTATTGGTCAAAATTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAAGTAAATTGACCATATCCGTATGTATTGGTCAAAATTTATTTT  100

seq1  TTTTAATGGCTTGAAAGAAGTGAATGAATATGGTAACAGTGAGCCCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGGCTTGAAAGAAGTGAATGAATATGGTAACAGTGAGCCCACAC  150

seq1  TGTTCCTGTATGTCAGAACTTCATAGAGGCTTGTTTCTTCCTTTGTACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGTATGTCAGAACTTCATAGAGGCTTGTTTCTTCCTTTGTACCT  200

seq1  TTCTAAAATATTGTTGTCTATTACCATTACCTTTCCCCTTGAATGTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAATATTGTTGTCTATTACCATTACCTTTCCCCTTGAATGTAAAT  250

seq1  AATGCATTTTGTGATTTGACTGAAAGAAGTCAGGAAAAGTAAGGTATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTTTGTGATTTGACTGAAAGAAGTCAGGAAAAGTAAGGTATTAA  300

seq1  GGGTAACAAGTAAGCTCATATTCATAGTTTCTCTGTAAATACTATGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACAAGTAAGCTCATATTCATAGTTTCTCTGTAAATACTATGTGCT  350

seq1  TGCCGATGAGCCTACTTAGTAGAGATGGCATCCAGTCTGTCCATTTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGATGAGCCTACTTAGTAGAGATGGCATCCAGTCTGTCCATTTGGCT  400

seq1  TTGTCCTTGATTTAACAAACTGACATTTAACATTCTGTGTAGAATAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTGATTTAACAAACTGACATTTAACATTCTGTGTAGAATAAACA  450

seq1  GTGGCATACAAGGCAATATTTCATGGCAATCATGTACAACCCTGAAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATACAAGGCAATATTTCATGGCAATCATGTACAACCCTGAAGGTA  500

seq1  CTGGAAGTTGCACTCTACTGTGTTATTCTGGGCACTCTAAACTCTGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTTGCACTCTACTGTGTTATTCTGGGCACTCTAAACTCTGAGGA  550

seq1  AACCAGCTTTCTGTCTTAAGAAGTACTTTTGACACTCACCAGGGCTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTTTCTGTCTTAAGAAGTACTTTTGACACTCACCAGGGCTCTGC  600

seq1  AGTCTAGTAACTTAAGATCCCCAGTTCTCAATTTAGGTTACGCTCCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGTAACTTAAGATCCCCAGTTCTCAATTTAGGTTACGCTCCAGAA  650

seq1  AAAATTTTATATTCAGATTAACATTCTTCTCCTCTTACTATCTCTTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTATATTCAGATTAACATTCTTCTCCTCTTACTATCTCTTCTAG  700

seq1  GTATTTTCTTACAAATTTGCCTGCATTTTAGACCAAAACTATGAACAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCTTACAAATTTGCCTGCATTTTAGACCAAAACTATGAACAAAG  750

seq1  GATTGTGACTGTCTCATTAGAATTCTAAATTTCTCCTTTGCTGTTTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGACTGTCTCATTAGAATTCTAAATTTCTCCTTTGCTGTTTATGA  800

seq1  TTATGCTCATTTCTTTATAGTAGCCTCCCTTTCAAAACCTCAGTTTTCAC  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTATGCTCATTTCTTTATAGTAGCCTCCCTTTC-AAACCTCAGTTTTCAC  849

seq1  ATCCTATGTATCTTTGTTGCAATCATTAAATTCCAGGTTCATACAAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGTATCTTTGTTGCAATCATTAAATTCCAGGTTCATACAAGAAA  899

seq1  ATGAACTCACCTAATGGTGAAGCCAATTAAACACAGACGGTTTTTAATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCACCTAATGGTGAAGCCAATTAAACACAGACGGTTTTTAATGC  949

seq1  ATAAATATGTCTGATATATGGAAGATTAGCCAGAGTAAGAAAAGCAGATA  1000
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  ATAAATATGTCTGATATATGGAAGATTAGCCAGAGTA--GAAAGCAGATA  997

seq1  TTTCTCAAGCTACAAGTTATTGATTTATTCAGCCATGACATACTAATTAT  1050
       ||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  -TTCTCAAGCTACAAGTTATTGATTTATTCAGCCATGACAAACT-ATTAT  1045

seq1  TTCCTCTGTGCATTGTAGTGAGCAGGTTTGTATCCTCAAG-ATACTTACT  1099
      |||||||||||| ||||||||||| |||||||| |||||| ||||| || 
seq2  TTCCTCTGTGCA-TGTAGTGAGCA-GTTTGTAT-CTCAAGAATACTAAC-  1091

seq1  TACCT-CTTGCACTCAGTAGTCTTTATAGATTTAAAAAAAAAAACCTC-A  1147
      ||||| ||||| ||| || ||||||| |||||    |||||| ||||| |
seq2  TACCTCCTTGCCCTC-GTTGTCTTTA-AGATT----AAAAAACACCTCGA  1135

seq1  GATGTGTATCAATCACACATTGAATCAATCA  1178
      |||| ||||||||| |||| |||||||||||
seq2  GATGGGTATCAATC-CACACTGAATCAATCA  1165

seq1: chr4_8331284_8331817
seq2: B6Ng01-013F09.g_65_600 (reverse)

seq1  AAGTTAATGATCTAAACAGTCCCATATCCCCTAAAG-AAATAGAAGCAGT  49
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  AAGTTAATGATCTAAACAGTCCCATATCCCCTAAAGAAAATAGAAGCAGC  50

seq1  CATTAATAGTCTCCCAGCCAAAAAAAAGCCCAGGACCAGATGGGTTTAGT  99
      ||||||||||||||||||| ||||||||||||  ||||||||||||||||
seq2  CATTAATAGTCTCCCAGCC-AAAAAAAGCCCACAACCAGATGGGTTTAGT  99

seq1  GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAA  149
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAGTTCCAGTTCTGCACAA  149

seq1  ACTATTCCACAAAATAGAAGAAGAAGGTACTCTACCCAACTCATTCTATG  199
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTTTTCCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTCTATG  199

seq1  AAGCTAC-AATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGAT  248
      |||| || ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAAATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGAT  249

seq1  AGAGATCTTCAGACCAATTTCCCTTATGAATATCGATGCAAAAATACTCA  298
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAGAACTTCAGACCAATTTCCCTTATGAATATCAATGCAAAAATACTCA  299

seq1  ATAAAATTCTCGCTAACCGAACCCAAGAAAACATTAAAGCAATCATCCAT  348
      |||||||||||||||||| || ||||||| ||||||||||||||||||||
seq2  ATAAAATTCTCGCTAACCAAATCCAAGAACACATTAAAGCAATCATCCAT  349

seq1  CATGACCAAGTAGGTTTTATTCCAGGGATTCAGGGATGGTTTAATGTACG  398
      | ||||||||||||||||||||||||||| ||||||||||||||| ||| 
seq2  CCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACA  399

seq1  GAAATCCATCACCATAATCCATTATATAAACAAA-ACAAAGACAAAAACC  447
      ||||||||||| ||||||| ||||||||||||||  ||||||||||||||
seq2  GAAATCCATCAACATAATCTATTATATAAACAAACTCAAAGACAAAAACC  449

seq1  ACATGATCATCTCGTTAGATGGGGAGAAAGCATTTGACAAGATCCAACAC  497
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  ACATGATCATCTCCTTAGATGTGGAGAAAGCATTTGACAAGATCCAACAC  499

seq1  CCATTCATGATAAAGGTCTTGGAAAGATCAGGAATTC  534
      |||||||||||||| ||||||||||||| ||||||||
seq2  CCATTCATGATAAAAGTCTTGGAAAGATAAGGAATTC  536