BAC Information

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BAC

Clone NameB6Ng01-013P12
Chromosome4 (Build37)
Map Location 75,663,325 - 75,664,462
singlet/doubletsinglet
Overlap genePtprd
Upstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013P12.bB6Ng01-013P12.g
ACCDH848649DH848650
length1,2131,107
definitionDH848649|Mus musculus domesticus DNA, BAC clone: B6Ng01-013P12, 5' end.DH848650|Mus musculus domesticus DNA, BAC clone: B6Ng01-013P12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtaagaatgttgcctattcagtgacattcagaattgcctctag
tattgtaagagagatagtgaaagaaatcaggcattactacatagagttag
aaatctcagggcaagcttagcaaagtaagtttagaattcttattatagtt
atgtatggcagactacattagttattagtagaaaggtccccccccccact
atcacttagaataaaagccaagttgctcccatatacaggaatttacaatg
gtttaggaagtagatctgtggttttagagtcttgcattattcatgaggag
gttagctagagtggaactccctaattagaaccatgacttgggcaagaaag
accttgccccaggagtgtaaagacctctcacctggcttctaagactccag
ctgatcttagatagagctgacttggtctcagttgttttattgcccagttg
ctgccagtctttgtttgcattcctctgttttgtgtaagagtcattaagca
tccggtaacctcatttgtaccttgccgatgtgtcacctaacttccctatt
ttcttctgtataaaaaggttgatgctcattttgacaaattacattcagat
tcagcacacttccttatgtcctgtctgtttgtcaccctattttcactgac
tctgtgcccatctgtcggaaaccctgattcccatggattgaggggggcct
actgagcccggtccgtggcatttaggatttttttaagaaactttttattg
attcttcatgaatgtcatatcacacaccctaattccactcatttcccatc
ccttcagaactgtgttctgccttttgcaaccccctccccaaagggaaaaa
aaaagaaagagagagagagaaattaaaaataaaaacaaggaaagcagtag
tgtgtcaggctttaaacacttttgttcacacagccttacttggaaatgct
cacagcaatgagtcttttgtccaatgtgaggcctatggcttctgttatac
tatcatactgatctcaccagagtccatttggatatcttgttgttgccctt
gtcatggagttccacactgtgattggcatgatgggctcctttccatggga
tcagtcacatattagttggatgtgaagataggcaatcaggcctggaatct
aagctgggtacgctgttggcacctaacctcacgactgtgccttctaacca
caggagctaagca
gaattctttcagtggtagtttgtaattctctatattactgccatggacaa
gaaggaagcattgaatttttattttctgatccagaaaacaaggtattgat
taaacattaacaaaagtcttatttttcagttttgaagtttatctgttttt
tatgagaaaggataaatgatttaacacaaagcaaaagataatgaaaaaaa
aaaccttcctaataaatggcaagcaagaacaatactgaaaggctaaggtg
cattttgactccatgatgcaaagtaaaatagactgatgtttccagtccca
ttagaacattctacattttatgaacaattaataccattgatagagtccgc
taatgtcttttacaaacctcattatggtttgtatctgctagtttccctta
aagtgttgtatgttccttgctttaatgatatgaatcacagtaatcatgaa
atcaagacatccattcatcattgctcttcccttttacagtctactaatgt
tctgttttttaagaatgggcaggtctccattatcaagtagaaacagaaaa
gtaagcaacacatgtagggacttgtgctctgttttgttatctctgccaaa
aagtagatgagttccaaatgatagagctggacatgttgttacataataaa
tagaggggcagaaatggattgccttgcagcaataacaaagcaactcccta
tcttttataattccaagtgaaagtagaaacaatttccttgaagggaaaac
aaatactgctagcttgctgaggctgggtagacaaaggctgttctgacccc
actcagtggatacatgtgggagagagatgtgctccttttcagttaagact
taaaacgcatgctttgcccttcatcgttgaggtgcatacagaatcacata
ttagcaagcgtgcatagctatttatttagtaccaaactggtacttcagaa
aggaagatacctatatgattggtttataatgcacgtgattatatttataa
taattatttttctcatcagaacacactgtcatcacagtgtttctgaaagc
atgccatttattaatactatttagttgtcaagatcaggatttcattttat
aactctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_75663325_75664462
seq2: B6Ng01-013P12.g_69_1175 (reverse)

seq1  AAGATTTATTAAATGAGATACCTGATCTGTGAACAACTAAAATAGTTATT  50
      |||| |||| |||||| || |||||||| || |||||| |||||| ||||
seq2  AAGAGTTATAAAATGAAAT-CCTGATCT-TG-ACAACT-AAATAG-TATT  45

seq1  AATTAAAATGGGGCATGCTTCTCAGAAACACTGTGGATTGACAGTTGTGT  100
      |||  ||||  ||||||||| ||||||||||||||   |||||| |||||
seq2  AAT--AAAT--GGCATGCTT-TCAGAAACACTGTG--ATGACAG-TGTGT  87

seq1  TCTGATTGGAGAAAAATAATTATTTATTAAATATAATCCACGTGCATTAT  150
      ||||||  ||||||||||||||||   |||||||||| ||||||||||| 
seq2  TCTGAT--GAGAAAAATAATTATT--ATAAATATAAT-CACGTGCATTA-  131

seq1  TAAACCAATTCATATAGGTATCTTTCCTTTCCTGAAGGTACCCAGGTTTG  200
      |||||||| ||||||||||||| ||||||| ||||| ||| ||||  || 
seq2  TAAACCAA-TCATATAGGTATC-TTCCTTT-CTGAA-GTA-CCAG--TTT  174

seq1  GGTACTAAATAAATAGGCTATGCACCGCTTGCTAATATTGGTGATTCTGT  250
      ||||||||||||||| |||||||| |||||||||||||  ||||||||||
seq2  GGTACTAAATAAATA-GCTATGCA-CGCTTGCTAATAT--GTGATTCTGT  220

seq1  ATGCACCCTCAACGATGAAGGGCAAAGCATGCGTTTTAAGTCTTAACTGA  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCA-CCTCAACGATGAAGGGCAAAGCATGCGTTTTAAGTCTTAACTGA  269

seq1  AAAGGAGCACATCTCTCTCCCACATGTATCCACTGAGTGGGGTCAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCACATCTCTCTCCCACATGTATCCACTGAGTGGGGTCAGAACA  319

seq1  GCCTTTGTCTACCCAGCCTCAGCAAGCTAGCAGTATTTGTTTTCCCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTCTACCCAGCCTCAGCAAGCTAGCAGTATTTGTTTTCCCTTCA  369

seq1  AGGAAATTGTTTCTACTTTCACTTGGAATTATAAAAGATAGGGAGTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTGTTTCTACTTTCACTTGGAATTATAAAAGATAGGGAGTTGCT  419

seq1  TTGTTATTGCTGCAAGGCAATCCATTTCTGCCCCTCTATTTATTATGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTGCTGCAAGGCAATCCATTTCTGCCCCTCTATTTATTATGTAA  469

seq1  CAACATGTCCAGCTCTATCATTTGGAACTCATCTACTTTTTGGCAGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTCCAGCTCTATCATTTGGAACTCATCTACTTTTTGGCAGAGAT  519

seq1  AACAAAACAGAGCACAAGTCCCTACATGTGTTGCTTACTTTTCTGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAGAGCACAAGTCCCTACATGTGTTGCTTACTTTTCTGTTTCT  569

seq1  ACTTGATAATGGAGACCTGCCCATTCTTAAAAAACAGAACATTAGTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATAATGGAGACCTGCCCATTCTTAAAAAACAGAACATTAGTAGAC  619

seq1  TGTAAAAGGGAAGAGCAATGATGAATGGATGTCTTGATTTCATGATTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGGGAAGAGCAATGATGAATGGATGTCTTGATTTCATGATTACT  669

seq1  GTGATTCATATCATTAAAGCAAGGAACATACAACACTTTAAGGGAAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCATATCATTAAAGCAAGGAACATACAACACTTTAAGGGAAACTA  719

seq1  GCAGATACAAACCATAATGAGGTTTGTAAAAGACATTAGCGGACTCTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATACAAACCATAATGAGGTTTGTAAAAGACATTAGCGGACTCTATC  769

seq1  AATGGTATTAATTGTTCATAAAATGTAGAATGTTCTAATGGGACTGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTATTAATTGTTCATAAAATGTAGAATGTTCTAATGGGACTGGAAA  819

seq1  CATCAGTCTATTTTACTTTGCATCATGGAGTCAAAATGCACCTTAGCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCTATTTTACTTTGCATCATGGAGTCAAAATGCACCTTAGCCTT  869

seq1  TCAGTATTGTTCTTGCTTGCCATTTATTAGGAAGGTTTTTTTTTTCATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTGTTCTTGCTTGCCATTTATTAGGAAGGTTTTTTTTTTCATTA  919

seq1  TCTTTTGCTTTGTGTTAAATCATTTATCCTTTCTCATAAAAAACAGATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCTTTGTGTTAAATCATTTATCCTTTCTCATAAAAAACAGATAA  969

seq1  ACTTCAAAACTGAAAAATAAGACTTTTGTTAATGTTTAATCAATACCTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAACTGAAAAATAAGACTTTTGTTAATGTTTAATCAATACCTTG  1019

seq1  TTTTCTGGATCAGAAAATAAAAATTCAATGCTTCCTTCTTGTCCATGGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGATCAGAAAATAAAAATTCAATGCTTCCTTCTTGTCCATGGCA  1069

seq1  GTAATATAGAGAATTACAAACTACCACTGAAAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||
seq2  GTAATATAGAGAATTACAAACTACCACTGAAAGAATTC  1107