BAC Information

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BAC

Clone NameB6Ng01-013P15
Chromosome4 (Build37)
Map Location 65,831,452 - 66,007,544
singlet/doubletdoublet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013P15.bB6Ng01-013P15.g
ACCDH848655DH848656
length1,0361,194
definitionDH848655|Mus musculus domesticus DNA, BAC clone: B6Ng01-013P15, 5' end.DH848656|Mus musculus domesticus DNA, BAC clone: B6Ng01-013P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,006,493 - 66,007,544)(65,831,452 - 65,832,651)
sequence
gaattctctgttaactcatcccactctacaaagttgaatcctacacttgg
gaatgtgctatgaaggaggtcacagagcaacatctacacacagcctgaaa
gaggtgggaaacgtctgacaagcagactggagactcctagcccagggcct
ttctgcccaggagcacaagctgtctttttccttgactgagattagatgtt
tgcctggtgtctttgcatcatcagaatgtgccagatgctcctgggagggt
ctgtcagacaaactcttagaaatgttttcttcaatatttgtgatttctat
ttttttttcttttttcttttttttttcttttttctttttttttttttttt
tgagtacatatgaaggttgaactccctaacctatttttcacaggatggtt
tatatgtaggtcagaagcagaaatggtgaatgacattggtgggccaggac
attgacccatcagtgacaactctccagagttcccctttttcctctcccat
gtgatctggccatatttggattgtcattgtcccattcatttgcatcatgg
aaagactgcaatgagttgaggcccacaccagcctcagaatccgattgatt
attgaaagagaaagtatccttgtttaattcctggttttgagttgtgtcag
aagctggctatagctaatgctaacagagacaaagctgagacagaagcaag
gtgattgcagtgactgtggtctgaatgttcgcatacccctagtttatctg
ttataacctaatctccagtgtggttatattaagagatgtgcccttttggg
aaatgtaaagatgaatgtataaattattaaccactcaagagtgggataaa
tgcccagtaaaaagcatcacattgaaggagcttgtttgctctgcccttgc
tactacaaggagatgcagcaagaagaactacctatgagattgtgtgtcta
cagactcaattggtagctatacataaacttatctcttgagctatgacaat
atctacatatatattttaacaagcaaggcattttgt
gaattctaggcacactctcctatctgaccatgaaataaactgatcctcag
ttggagccaattcccctgatttattttggtaccgtatatcctctagctgc
atcttaaatctttctctttcagaaagaccttcttcaacagtcaaaaccca
ggtcaagcacttcctgtcatcaccaaaatcacacatcaaggggttttcct
ggattaatgaaatcagtaagtgcctgacatacatactggtacagatctca
aggttccagtctgatgtcacccataagaggataacgtctccaaggacaga
gctatgccagccatcatcaccttttctctgagccctaatgactatttgtg
aagtatgtgaatgaatgaatgagttgctgactatttgtgagagctaaatg
aagaaacagagtgcctgatctatttgcagaggactcacacactaaaaaaa
ggaacagtaattgaaactttcttttgcaataagcactcctcaaagcctag
tgacacacattaactcatttcgccttacaacagcctggaaatgcatgtga
tttttttccatttccctatttagaaatgaggacagtgagagacacagaca
ttttctaattttccctcataggtacgaaatatcagtagatttcaagagtt
ggcgggtgtgggcagacttgcatcagagtcctgctcctgctcaccatttt
gcagtggtatcttggctccaccccttcacttcatgcttgaattttctgca
gcttcacattcccttgttgaagcccatctcatgacgtctttcagatttat
cagtcttactcttcacttgtaaaaacccccacaacctttgtaccacatac
tatgcaagaagatttggggtggtagaagtacagtttgttggaagaggcct
ctctgtagcctctgactcttcctacaaattggaagacttcctttttcggg
ccatgggagagcacaatgcagcaattgtttctcctccatgatgtacagga
gactggagattgtcaggtagaagccaagcttattacagtatgctttccct
tttaggttgacatctacctggtctaaagcaagtaagttccatggcagctc
ttcccttcattggactcttgtagaccgaaacccatacagatctaatctcc
accaggcatgttcaattttccggtatgagactgtggtcttcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66006493_66007544
seq2: B6Ng01-013P15.b_47_1082 (reverse)

seq1  ACAAAATGCCTTTGGCTGTATAAAATATAAATAATGTAGAATTATTGTTC  50
      ||||||||||||  |||   |||||||||    |||||||  ||||| ||
seq2  ACAAAATGCCTT--GCTTGTTAAAATATA---TATGTAGA--TATTG-TC  42

seq1  ATAGCTCAAGAAGATAAGTTTAGTGTATAGCTACCAATTTTGAGTCTGGT  100
      |||||||||| ||||||||||| ||||||||||||||  |||||||| ||
seq2  ATAGCTCAAG-AGATAAGTTTA-TGTATAGCTACCAA--TTGAGTCT-GT  87

seq1  AAGGACACACAATCTCATAGGTAGTGTCTTCTTGCTGCATCTCCTTGTAG  150
      |  |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  A--GACACACAATCTCATAGGTAGT-TCTTCTTGCTGCATCTCCTTGTAG  134

seq1  TAGCAAGGGCAGAGCAAACAAGCTCCCTCAATGTGATGCTTTTTACTGGG  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGCAAGGGCAGAGCAAACAAGCTCCTTCAATGTGATGCTTTTTACTGGG  184

seq1  CATTTATCCCACTCCTGAGTGGTTAATAATTTATACATTCATTCTTTACA  250
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  CATTTATCCCACTCTTGAGTGGTTAATAATTTATACATTCA-TCTTTACA  233

seq1  TTTCCC-AAAGGGCACATCTCTTAATATAACCACACTGGAGATTAGGTTA  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAAAGGGCACATCTCTTAATATAACCACACTGGAGATTAGGTTA  283

seq1  TAACAGATAAACTAGGGGTATGCGAACATTCAGACCACAGTCACTGCAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATAAACTAGGGGTATGCGAACATTCAGACCACAGTCACTGCAAT  333

seq1  CACCCTGCTTCTGTCTCAGCTTTGTCTCTGTTAGCATTAGCTATAGCCAG  399
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGCTTCTGTCTCAGCTTTGTCTCTGTTAGCATTAGCTATAGCCAG  383

seq1  CTTCTGACACAACTCAAAACCAGGAATTAAACAAGGATACTTTCTCTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACACAACTCAAAACCAGGAATTAAACAAGGATACTTTCTCTTTC  433

seq1  AATAATCAATCGGATTCTGAGGCTGGTGTGGGCCTCAACTCATTGCAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCAATCGGATTCTGAGGCTGGTGTGGGCCTCAACTCATTGCAGTC  483

seq1  TTTCCATGATGCAAATGAATGGGACAATGACAATCCAAATATGGCCAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGATGCAAATGAATGGGACAATGACAATCCAAATATGGCCAGAT  533

seq1  CACATGGGAGAGGAAAAAGGGGAACTCTGGAGAGTTGTCACTGATGGGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGAGAGGAAAAAGGGGAACTCTGGAGAGTTGTCACTGATGGGTC  583

seq1  AATGTCCTGGCCCACCAATGTCATTCACCATTTCTGCTTCTGACCTACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTGGCCCACCAATGTCATTCACCATTTCTGCTTCTGACCTACAT  633

seq1  ATAAACCATCCTGTGAAAAATAGGTTAGGGAGTTCAACCTTCATATGTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCATCCTGTGAAAAATAGGTTAGGGAGTTCAACCTTCATATGTAC  683

seq1  TCAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAAAAAAGAAAAAAGAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAAAAAAGAAAAAAGAAAAA  733

seq1  AAAATAGAAATCACAAATATTGAAGAAAACATTTCTAAGAGTTTGTCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAAATCACAAATATTGAAGAAAACATTTCTAAGAGTTTGTCTGA  783

seq1  CAGACCCTCCCAGGAGCATCTGGCACATTCTGATGATGCAAAGACACCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCTCCCAGGAGCATCTGGCACATTCTGATGATGCAAAGACACCAG  833

seq1  GCAAACATCTAATCTCAGTCAAGGAAAAAGACAGCTTGTGCTCCTGGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACATCTAATCTCAGTCAAGGAAAAAGACAGCTTGTGCTCCTGGGCA  883

seq1  GAAAGGCCCTGGGCTAGGAGTCTCCAGTCTGCTTGTCAGACGTTTCCCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCCTGGGCTAGGAGTCTCCAGTCTGCTTGTCAGACGTTTCCCAC  933

seq1  CTCTTTCAGGCTGTGTGTAGATGTTGCTCTGTGACCTCCTTCATAGCACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAGGCTGTGTGTAGATGTTGCTCTGTGACCTCCTTCATAGCACA  983

seq1  TTCCCAAGTGTAGGATTCAACTTTGTAGAGTGGGATGAGTTAACAGAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGTGTAGGATTCAACTTTGTAGAGTGGGATGAGTTAACAGAGAA  1033

seq1  TTC  1052
      |||
seq2  TTC  1036

seq1: chr4_65831452_65832651
seq2: B6Ng01-013P15.g_69_1262

seq1  GAATTCTAGGCACACTCTCCTATCTGACCATGAAATAAACTGATCCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCACACTCTCCTATCTGACCATGAAATAAACTGATCCTCAG  50

seq1  TTGGAGCCAATTCCCCTGATTTATTTTGGTACCGTATATCCTCTAGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCCAATTCCCCTGATTTATTTTGGTACCGTATATCCTCTAGCTGC  100

seq1  ATCTTAAATCTTTCTCTTTCAGAAAGACCTTCTTCAACAGTCAAAACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAATCTTTCTCTTTCAGAAAGACCTTCTTCAACAGTCAAAACCCA  150

seq1  GGTCAAGCACTTCCTGTCATCACCAAAATCACACATCAAGGGGTTTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGCACTTCCTGTCATCACCAAAATCACACATCAAGGGGTTTTCCT  200

seq1  GGATTAATGAAATCAGTAAGTGCCTGACATACATACTGGTACAGATCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAATGAAATCAGTAAGTGCCTGACATACATACTGGTACAGATCTCA  250

seq1  AGGTTCCAGTCTGATGTCACCCATAAGAGGATAACGTCTCCAAGGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCAGTCTGATGTCACCCATAAGAGGATAACGTCTCCAAGGACAGA  300

seq1  GCTATGCCAGCCATCATCACCTTTTCTCTGAGCCCTAATGACTATTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCCAGCCATCATCACCTTTTCTCTGAGCCCTAATGACTATTTGTG  350

seq1  AAGTATGTGAATGAATGAATGAGTTGCTGACTATTTGTGAGAGCTAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGTGAATGAATGAATGAGTTGCTGACTATTTGTGAGAGCTAAATG  400

seq1  AAGAAACAGAGTGCCTGATCTATTTGCAGAGGACTCACACACTAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGAGTGCCTGATCTATTTGCAGAGGACTCACACACTAAAAAAA  450

seq1  GGAACAGTAATTGAAACTTTCTTTTGCAATAAGCACTCCTCAAAGCCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTAATTGAAACTTTCTTTTGCAATAAGCACTCCTCAAAGCCTAG  500

seq1  TGACACACATTAACTCATTTCGCCTTACAACAGCCTGGAAATGCATGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACATTAACTCATTTCGCCTTACAACAGCCTGGAAATGCATGTGA  550

seq1  TTTTTTTCCATTTCCCTATTTAGAAATGAGGACAGTGAGAGACACAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCATTTCCCTATTTAGAAATGAGGACAGTGAGAGACACAGACA  600

seq1  TTTTCTAATTTTCCCTCATAGGTACGAAATATCAGTAGATTTCAAGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATTTTCCCTCATAGGTACGAAATATCAGTAGATTTCAAGAGTT  650

seq1  GGCGGGTGTGGGCAGACTTGCATCAGAGTCCTGCTCCTGCTCACCATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGTGTGGGCAGACTTGCATCAGAGTCCTGCTCCTGCTCACCATTTT  700

seq1  GCAGTGGTATCTTGGCTCCACCCCTTCACCTTCATGCTTGAATTTTCTGC  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCAGTGGTATCTTGGCTCCACCCCTTCA-CTTCATGCTTGAATTTTCTGC  749

seq1  AGCTTCACATTCCCTTGTTGAAGCCCATCTCATGACGTCTTTCCAGATTT  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCTTCACATTCCCTTGTTGAAGCCCATCTCATGACGTCTTT-CAGATTT  798

seq1  ATCAGTCTTACTCTTTCACTTGTAAAAA-CCCCACAACC-TTGTACCACA  848
      ||||||||||||| |||||||||||||| |||||||||| ||||||||||
seq2  ATCAGTCTTACTC-TTCACTTGTAAAAACCCCCACAACCTTTGTACCACA  847

seq1  TACTATGCAAGAAGAATTGGGGTGGTAGAAGTACAG-TTGTTGGAAGAGG  897
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  TACTATGCAAGAAGATTTGGGGTGGTAGAAGTACAGTTTGTTGGAAGAGG  897

seq1  GCTCTCTGTAAGCCTCTGACTC-TCCTACAAAT--GGAGACTTCC-TTTT  943
       |||||||| |||||||||||| ||||||||||  | |||||||| ||||
seq2  CCTCTCTGT-AGCCTCTGACTCTTCCTACAAATTGGAAGACTTCCTTTTT  946

seq1  CTGGCCATGGGAGAGCACAATGCAGCAATTGTTTCTCCTCCATGATGTAC  993
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCATGGGAGAGCACAATGCAGCAATTGTTTCTCCTCCATGATGTAC  996

seq1  AGGAAGACTGGAGA-TGTCAGGTAGAAGCCAAGC-TAATACAGGTATGCT  1041
      ||| |||||||||| ||||||||||||||||||| || |||| |||||||
seq2  AGG-AGACTGGAGATTGTCAGGTAGAAGCCAAGCTTATTACA-GTATGCT  1044

seq1  TTCCCTTTTAGGTTGAGCATCTTACCTTGTCTAAGAGCAGGTAAAGTGCA  1091
      |||||||||||||||| |||| ||||| |||||| |||| ||||  | ||
seq2  TTCCCTTTTAGGTTGA-CATC-TACCTGGTCTAA-AGCAAGTAAGTTCCA  1091

seq1  TGGCAGCCTCTTCTCTCTAGAAGAACCTGAGAACACGGATCAC-TACAGT  1140
      |||||| |||||| ||  |   ||  ||   |   || | | | ||||| 
seq2  TGGCAG-CTCTTCCCTTCATTGGACTCTTGTAGACCGAAACCCATACAG-  1139

seq1  ACTCTACTCCCACCCCAGGCATTGTTCTATTTTCCCTGATGAGGAGCTGT  1190
        |||| || | | ||||||| ||||| |||||||   |||||   ||||
seq2  -ATCTAATCTC-CACCAGGCA-TGTTCAATTTTCCGGTATGAG--ACTGT  1184

seq1  GGTCTTCAAG  1200
      ||||||||||
seq2  GGTCTTCAAG  1194