BAC Information

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BAC

Clone NameB6Ng01-014K03
Chromosome4 (Build37)
Map Location 36,772,174 - 36,941,963
singlet/doubletdoublet
Overlap geneLOC100042132
Upstream geneLingo2
Downstream geneLOC545600, LOC621458, LOC277771
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014K03.bB6Ng01-014K03.g
ACCDH849121DH849122
length1,1591,004
definitionDH849121|Mus musculus domesticus DNA, BAC clone: B6Ng01-014K03, 5' end.DH849122|Mus musculus domesticus DNA, BAC clone: B6Ng01-014K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,940,801 - 36,941,963)(36,772,174 - 36,773,191)
sequence
gaattcatttcatataaggaatacacacacacacacacatacacacacac
acacacattctatttgtgtgcaggtatcaagcgaagagctgcatttcttg
ctcagtctctaaagttcaggaacaagtggtgcaatggtgaaatacaagta
caaaaaggggaacatggaaaagagccatgcctagtgttaattctatgtgt
ggcagaattgtacaatttaccccacctatcactttctttcttcctcctag
actttctctctatttctataaggtaaaatacataaatatttttgtatttt
actttacagcaataaatatttgttttgtgctatatattgttccagaatat
actttgttatattttcatactttgatatatactttcatactttgaagtat
gtagataaacacaaagaggggtccaaaaggtagaaaaaacaaaattctcg
gctagttttgacatatggtgactttaaaaatggtttaacaaactcacaga
aggtattcagaatattattcttttccagtgccacggcctaggtaggaact
cttatgcacagatatgggtatcctgggagaaactgaatcactctgggcta
taactgccattgtgcttttctgacaaaatacaatcttctcagttctgcct
tcacctactagaaaagtcactgcatctccaataagaactctaacccaatg
ttctaattttagactgttaacagaaacaaatttctttggatgtaactgtc
aaaataagtaaactggtcacttcctcactatctcttaattaaaggtattt
ttagccaactaagtagcctaggattatgagttttcataagcaggaaatga
tgtatgtgcaggcatacaccgtttttgcagacacatccagggattctgga
cttgctaagtcagcagttattatcttagtgaagttcgcaaagcctggctc
catagttcttctctactctcagatgcccatcacagcagctctgtgagctg
atgaagcacattaagaatataacttcttggtagtagaaattgaaaaaggt
cagcaattggtcattctagcatggcttgaacaaaatggagtggaattgca
gtgagttatggcagttccttcacagaatatctggtggctataatatattc
agtggggaa
gaattctatgactaagccatgaggatcaagccagtaagaaacactccttc
atagcctcccatctgctcctgcctctggtgcactgtcaggcttgagtact
gccttgtcccttggtggactgttaaaggatatggaagagaactaaaactc
ttctccccaaatgttttggattatggtgtttcatcacagcaataattacc
ttaactaagaattttccccaatgagtaatgataacaacaacattattttt
agattagaaatgtgtaatcatacttcagagagccagtcaaaaggagtaca
aaagttactcaggaccatgacagtatattggccacttcgtgtgatgagat
caattaacatcaatggataaataactgacaactcctcctgtcaacttgag
gggtaggagaggttggagggactgtgccagggagatactggagcggagga
aatgagggctaaaaggaatataattatacttcagataaaaacatttaaaa
ataaaatcatataaaaggcttttaaaaagattccctactaaaatgtccat
ctattttctatctttcttttttattggcattttttttcctttttgaagtc
ataaattagttaaaagtatcgctgttcccacatttatttcatttgctttc
atctattaaatatcagatacttagtaaaattacttactaactggaaagga
ttagcaaaggggtagatttgacctctggaggcattaagtagagattatta
tcacggtcacagccttcggaggaactatggacatgaagaatgcccagaac
acacagcatacaaggaaacaggaaatagttcaagaagccacaccaatgac
tggagtctaattaagcagagtaattctgcttttgttctattcctcaactt
tgacctatatgtccaatccagcatgtgtccatcagatacaaaaatatttt
atagtctatcatgtcacaaaaaatattatgagaaatgagatatttgtcat
ataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36940801_36941963
seq2: B6Ng01-014K03.b_43_1201 (reverse)

seq1  TTCCACACTGAAATATATTATAGCCCACCAGATAATCCTGT-AAGGAACT  49
      |||| ||||| |||||||||||| ||||||||| || |||| ||||||||
seq2  TTCCCCACTG-AATATATTATAG-CCACCAGAT-ATTCTGTGAAGGAACT  47

seq1  GCCAATAATCACTGCAATTCCACTCCA-TTTGGTCAGACCATGCTGAGAA  98
      ||||  | ||||||||||||||||||| |||| |||  ||||||| ||||
seq2  GCCATAACTCACTGCAATTCCACTCCATTTTGTTCAAGCCATGCT-AGAA  96

seq1  TTGACCAATTGCTGAACTGTCTCAATATCTACTACCAAGAAG-TATATTC  147
       |||||||||||||| || | ||||| ||||||||||||||| |||||||
seq2  -TGACCAATTGCTGACCTTTTTCAATTTCTACTACCAAGAAGTTATATTC  145

seq1  TTAATGTGCTTCATCAGCTCACAGAGCTGCTGTGATGGGCATCTTGAGAG  197
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTAATGTGCTTCATCAGCTCACAGAGCTGCTGTGATGGGCATC-TGAGAG  194

seq1  TAGAGAAGAACTATGGAGCCAGGCTTTGCGAACCTTCACTAAGATAATAA  247
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGAGAAGAACTATGGAGCCAGGCTTTGCGAA-CTTCACTAAGATAATAA  243

seq1  CTGCTGACTTAGCAAGTCCAGAATCCCTGGATGTGTCTGCAAAAACGGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACTTAGCAAGTCCAGAATCCCTGGATGTGTCTGCAAAAACGGTG  293

seq1  TATGCCTGCACATACATCATTTCCTGCTTATGAAAACTCATAATCCTAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGCACATACATCATTTCCTGCTTATGAAAACTCATAATCCTAGG  343

seq1  CTACTTAGTTGGCTAAAAATACCTTTAATTAAGAGATAGTGAGGAAGTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGTTGGCTAAAAATACCTTTAATTAAGAGATAGTGAGGAAGTGA  393

seq1  CCAGTTTACTTATTTTGACAGTTACATCCAAAGAAATTTGTTTCTGTTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTACTTATTTTGACAGTTACATCCAAAGAAATTTGTTTCTGTTAA  443

seq1  CAGTCTAAAATTAGAACATTGGGTTAGAGTTCTTATTGGAGATGCAGTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAAAATTAGAACATTGGGTTAGAGTTCTTATTGGAGATGCAGTGA  493

seq1  CTTTTCTAGTAGGTGAAGGCAGAACTGAGAAGATTGTATTTTGTCAGAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAGTAGGTGAAGGCAGAACTGAGAAGATTGTATTTTGTCAGAAA  543

seq1  AGCACAATGGCAGTTATAGCCCAGAGTGATTCAGTTTCTCCCAGGATACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATGGCAGTTATAGCCCAGAGTGATTCAGTTTCTCCCAGGATACC  593

seq1  CATATCTGTGCATAAGAGTTCCTACCTAGGCCGTGGCACTGGAAAAGAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGTGCATAAGAGTTCCTACCTAGGCCGTGGCACTGGAAAAGAAT  643

seq1  AATATTCTGAATACCTTCTGTGAGTTTGTTAAACCATTTTTAAAGTCACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTGAATACCTTCTGTGAGTTTGTTAAACCATTTTTAAAGTCACC  693

seq1  ATATGTCAAAACTAGCCGAGAATTTTGTTTTTTCTACCTTTTGGACCCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCAAAACTAGCCGAGAATTTTGTTTTTTCTACCTTTTGGACCCCT  743

seq1  CTTTGTGTTTATCTACATACTTCAAAGTATGAAAGTATATATCAAAGTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTTTATCTACATACTTCAAAGTATGAAAGTATATATCAAAGTAT  793

seq1  GAAAATATAACAAAGTATATTCTGGAACAATATATAGCACAAAACAAATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATAACAAAGTATATTCTGGAACAATATATAGCACAAAACAAATA  843

seq1  TTTATTGCTGTAAAGTAAAATACAAAAATATTTATGTATTTTACCTTATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCTGTAAAGTAAAATACAAAAATATTTATGTATTTTACCTTATA  893

seq1  GAAATAGAGAGAAAGTCTAGGAGGAAGAAAGAAAGTGATAGGTGGGGTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAGAGAAAGTCTAGGAGGAAGAAAGAAAGTGATAGGTGGGGTAA  943

seq1  ATTGTACAATTCTGCCACACATAGAATTAACACTAGGCATGGCTCTTTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACAATTCTGCCACACATAGAATTAACACTAGGCATGGCTCTTTTC  993

seq1  CATGTTCCCCTTTTTGTACTTGTATTTCACCATTGCACCACTTGTTCCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCCCCTTTTTGTACTTGTATTTCACCATTGCACCACTTGTTCCTG  1043

seq1  AACTTTAGAGACTGAGCAAGAAATGCAGCTCTTCGCTTGATACCTGCACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGAGACTGAGCAAGAAATGCAGCTCTTCGCTTGATACCTGCACA  1093

seq1  CAAATAGAATGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTATTCCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAATGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTATTCCT  1143

seq1  TATATGAAATGAATTC  1163
      ||||||||||||||||
seq2  TATATGAAATGAATTC  1159

seq1: chr4_36772174_36773191
seq2: B6Ng01-014K03.g_65_1068

seq1  GAATTCTATGACTAAGCCATGAGGATCAAGCCAGTAAGAAACACTCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGACTAAGCCATGAGGATCAAGCCAGTAAGAAACACTCCTTC  50

seq1  ATAGCCTCCCATCTGCTCCTGCCTCTGGTGCACTGTCAGGCTTGAGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTCCCATCTGCTCCTGCCTCTGGTGCACTGTCAGGCTTGAGTACT  100

seq1  GCCTTGTCCCTTGGTGGACTGTTAAAGGATATGGAAGAGAACTAAAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCCCTTGGTGGACTGTTAAAGGATATGGAAGAGAACTAAAACTC  150

seq1  TTCTCCCCAAATGTTTTGGATTATGGTGTTTCATCACAGCAATAATTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCAAATGTTTTGGATTATGGTGTTTCATCACAGCAATAATTACC  200

seq1  TTAACTAAGAATTTTCCCCAATGAGTAATGATAACAACAACATTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAAGAATTTTCCCCAATGAGTAATGATAACAACAACATTATTTTT  250

seq1  AGATTAGAAATGTGTAATCATACTTCAGAGAGCCAGTCAAAAGGAGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGAAATGTGTAATCATACTTCAGAGAGCCAGTCAAAAGGAGTACA  300

seq1  AAAGTTACTCAGGACCATGACAGTATATTGGCCACTTCGTGTGATGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTACTCAGGACCATGACAGTATATTGGCCACTTCGTGTGATGAGAT  350

seq1  CAATTAACATCAATGGATAAATAACTGACAACTCCTCCTGTCAACTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAACATCAATGGATAAATAACTGACAACTCCTCCTGTCAACTTGAG  400

seq1  GGGTAGGAGAGGTTGGAGGGACTGTGCCAGGGAGATACTGGAGCGGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGAGAGGTTGGAGGGACTGTGCCAGGGAGATACTGGAGCGGAGGA  450

seq1  AATGAGGGCTAAAAGGAATATAATTATACTTCAGATAAAAACATTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGCTAAAAGGAATATAATTATACTTCAGATAAAAACATTTAAAA  500

seq1  ATAAAATCATATAAAAGGCTTTTAAAAAGATTCCCTACTAAAATGTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCATATAAAAGGCTTTTAAAAAGATTCCCTACTAAAATGTCCAT  550

seq1  CTATTTTCTATCTTTCTTTTTTATTGGCATTTTTTTTCCTTTTTGAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCTATCTTTCTTTTTTATTGGCATTTTTTTTCCTTTTTGAAGTC  600

seq1  ATAAATTAGTTAAAAGTATCGCTGTTCCCACATTTATTTCATTTGCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAGTTAAAAGTATCGCTGTTCCCACATTTATTTCATTTGCTTTC  650

seq1  ATCTATTAAATATCAGATACTTAGTAAAATTACTTACTAACTGGAAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTAAATATCAGATACTTAGTAAAATTACTTACTAACTGGAAAGGA  700

seq1  TTAGCAAAGGGGTAGATTTGACCTCTGGAGGCATTAAGTAGGAGATTATT  750
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTAGCAAAGGGGTAGATTTGACCTCTGGAGGCATTAAGTA-GAGATTATT  749

seq1  ATCACGGTCACAGCCTTCGGAGGAACTATGGACATGAAGAAGGCCCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCACGGTCACAGCCTTCGGAGGAACTATGGACATGAAGAATGCCCAGAA  799

seq1  CACACAGCATACAAGGAAACAGGAAATAGTTCAAGAAGCCACACCAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCATACAAGGAAACAGGAAATAGTTCAAGAAGCCACACCAATGA  849

seq1  CTGGAGTCTAATTAAAGCAGAAGTAATTCTGCTTTTGTTCTATTCCTCAA  900
      ||||||||||||| |||||| ||||||||||||||||||||||||||| |
seq2  CTGGAGTCTAATT-AAGCAG-AGTAATTCTGCTTTTGTTCTATTCCTC-A  896

seq1  ACTTTGACCTATATTGTTCCAAAGCCAGCATGTGTCCATCAGATACCAAA  950
      ||||||||||||| |||  | || ||||||||||||||||||||||  ||
seq2  ACTTTGACCTATA-TGT--CCAATCCAGCATGTGTCCATCAGATAC--AA  941

seq1  AAATATTTTATAGTCTATCATGGTCACAAAAAAATATTATGAGAATATTG  1000
      ||||||||||||||||||||| ||||| ||||||||||||||||  | ||
seq2  AAATATTTTATAGTCTATCAT-GTCAC-AAAAAATATTATGAGA--AATG  987

seq1  AGGATATTTGTCATATAA  1018
      | ||||||||||||||||
seq2  A-GATATTTGTCATATAA  1004