BAC Information

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BAC

Clone NameB6Ng01-014N06
Chromosome4 (Build37)
Map Location 25,338,868 - 25,475,955
singlet/doubletdoublet
Overlap geneLOC625732
Upstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019
Downstream geneFut9, LOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014N06.bB6Ng01-014N06.g
ACCDH849261DH849262
length857903
definitionDH849261|Mus musculus domesticus DNA, BAC clone: B6Ng01-014N06, 5' end.DH849262|Mus musculus domesticus DNA, BAC clone: B6Ng01-014N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,338,868 - 25,339,730)(25,475,040 - 25,475,955)
sequence
gaattctgttactgattttaaaaaccactaaaccttccagtgaatgtcct
ttagcgaaacagcagaatagcttatttttaactggtagaggttttaaatt
aaaaaataaatttaaatgtccttgtatttgctaattgaacaatttttttt
agacatgcaagttcaaatgtgtagatgcattggattttatagctagtgtt
taaaagttcagtttctgggaactgtctatgtcgtaatgtagctatgtgat
atatttgtaaactgtgacatgatttatttttataatctttatatccagtt
ttcttacctgttactgggttattgtaacagcatccagctcactggagcat
tgggaggtgattaatcacaggaacttctagccaatgattagaatactcag
ctgttcttcttgcaattgaactttcagtatcagtgaggtatcaccagcta
ttctaggctgccatcatttaaacattgattggtataaacttcacttagaa
atctcttcttttataatctaatctcgataacttcttcacagaagcatttt
cttttcatctttctctttatccatttattttctcaacataatatgtttat
tgattatttggaaattccatataatgcaccctgatcacatttacttctgg
tccatcccccaccctgtgaactcccttgaaaagaataaggaggaggagga
agaggaggaggaggagattctggtttcaatttgtgatgcacatatactca
ctggagcacgatcaaactctcaatggtcagccccttaaagaaaacagact
ctttcccaccacataaaatccatcagctccgaagagaagacgtgagtatc
acatgtt
gaattccaagactgacagtacacataagaccagaatgggttgaaaccagt
caaaatcccagcacttagaagatgaaatggacacacatttctacacctaa
ccaagaaggtatttgcaattgatacccattgaaaagaagagaaacaaatt
ttctccagtggagtgtcactgagtatatcaagcattctttaaggtaaaca
aacaaacaaacaataaacaataaacaacaacaaaaaggactccttatttt
ctggtgtttcaaaaacaaaaataatacaaattagctgatagagtatacac
aaaaatttctttatgttttgagctgttattgttttaagtgaaaccatgaa
agaactgagaatgtcccttagttcaaagggtgagctgacaaaaaaactga
aaatgaagaggaattgatgactctgagaagaaaatgtcagaaaataatca
tactcaaacatgtggtacttttacatctttaaatgacaatgctttgaact
tacaatgagcttacagaatgaaacactactttgaacttactatcaacatc
tttctgtaattcctattctttgtaacattttatctatgaggtaattttgt
aaagaacttttgtctaaagaggtatgaattgccagagagaagaaataaag
tattcctgttgggctctcatcctaccacaaaatgtgtgtatatgtgtgta
tatgtatatgtctatatatatatgtatgtgcatatatgcataagtaggaa
taaatgcatgtacacttgtgaaatgatgatgaaacaggtgatcagactgg
ccagagtatgtgtgttttcttgtgaaactgacaaaagtcatcagtgttgg
tccagaacagtagtaattacgaatgccaaaggttctggccccaaacagaa
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_25338868_25339730
seq2: B6Ng01-014N06.b_43_899

seq1  GAATTCTGTTACTGATTTTAAAAACCACTAAACCTTCCAGTGAATGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTACTGATTTTAAAAACCACTAAACCTTCCAGTGAATGTCCT  50

seq1  TTAGCGAAACAGCAGAATAGCTTATTTTTAACTGGTAGAGGTTTTAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCGAAACAGCAGAATAGCTTATTTTTAACTGGTAGAGGTTTTAAATT  100

seq1  AAAAAATAAATTTAAATGTCCTTGTATTTGCTAATTGAACAATTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAATTTAAATGTCCTTGTATTTGCTAATTGAACAATTTTTTTT  150

seq1  AGACATGCAAGTTCAAATGTGTAGATGCATTGGATTTTATAGCTAGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGCAAGTTCAAATGTGTAGATGCATTGGATTTTATAGCTAGTGTT  200

seq1  TAAAAGTTCAGTTTCTGGGAACTGTCTATGTCGTAATGTAGCTATGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTCAGTTTCTGGGAACTGTCTATGTCGTAATGTAGCTATGTGAT  250

seq1  ATATTTGTAAACTGTGACATGATTTATTTTTATAATCTTTATATCCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTAAACTGTGACATGATTTATTTTTATAATCTTTATATCCAGTT  300

seq1  TTCTTACCTGTTACTGGGTTATTGTAACAGCATCCAGCTCACTGGAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCTGTTACTGGGTTATTGTAACAGCATCCAGCTCACTGGAGCAT  350

seq1  TGGGAGGTGATTAATCACAGGAACTTCTAGCCAATGATTAGAATACTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTGATTAATCACAGGAACTTCTAGCCAATGATTAGAATACTCAG  400

seq1  CTGTTCTTCTTGCAATTGAACTTTCAGTATCAGTGAGGTATCACCAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCTTGCAATTGAACTTTCAGTATCAGTGAGGTATCACCAGCTA  450

seq1  TTCTAGGCTGCCATCATTTAAACATTGATTGGTATAAACTTCACTTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGCTGCCATCATTTAAACATTGATTGGTATAAACTTCACTTAGAA  500

seq1  ATCTCTTCTTTTATAATCTAATCTCGATAACTTCTTCACAGAAGCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCTTTTATAATCTAATCTCGATAACTTCTTCACAGAAGCATTTT  550

seq1  CTTTTCATCTTTCTCTTTATCCATTTATTTTCTCAACATAATATGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATCTTTCTCTTTATCCATTTATTTTCTCAACATAATATGTTTAT  600

seq1  TGATTATTTGGAAATTCCATATAATGCACCCTGATCACATTTACTTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTTGGAAATTCCATATAATGCACCCTGATCACATTTACTTCTGG  650

seq1  TCCATCCCCCACCCTGTGAACTCCCTTGAAAAGAATAAGGAGGAGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCCCACCCTGTGAACTCCCTTGAAAAGAATAAGGAGGAGGAGGA  700

seq1  AGAGGAGGAGGAGGAGATACTGGTTTCAATTTGTGATGCACATATACTCA  750
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAGGAGGAGGAGGAGATTCTGGTTTCAATTTGTGATGCACATATACTCA  750

seq1  CTGGAGCACGATCAAACTCTCAATGGTCAGCCCCTTAAAGAAAACAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCACGATCAAACTCTCAATGGTCAGCCCCTTAAAGAAAACAGACT  800

seq1  CTTTCCCCACCCACATAAAAATCCATCAGCTCCGAAGAGGTAGACGTGAG  850
      |||||||   |||||| ||||||||||||||||||||| | |||||||| 
seq2  CTTTCCC--ACCACAT-AAAATCCATCAGCTCCGAAGA-GAAGACGTGA-  845

seq1  GTATCACAGTGTT  863
      |||||||| ||||
seq2  GTATCACA-TGTT  857

seq1: chr4_25475040_25475955
seq2: B6Ng01-014N06.g_67_969 (reverse)

seq1  TCTTACTGTTTTGGGGGCCAGAAACTTCTGGCATCTGGTAATTTAACTTA  50
      |||| ||||||  |||||||||| ||| |||||| | ||||||  || ||
seq2  TCTTTCTGTTT--GGGGCCAGAACCTT-TGGCAT-TCGTAATT--AC-TA  43

seq1  CTGTTCTGGGACCAACACCTGATGACTTTTGTCAGTTTCACAAAGAAAAA  100
      ||||||| ||||||||| ||||||||||||||||||||||| ||||||| 
seq2  CTGTTCT-GGACCAACA-CTGATGACTTTTGTCAGTTTCAC-AAGAAAA-  89

seq1  CAACACATACTCTGGCCAGTCCTGATCACCTGTTTCATCATCAATTTCAC  150
        |||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  -CACACATACTCTGGCCAGT-CTGATCACCTGTTTCATCATC-ATTTCAC  136

seq1  AAGTGTACATGCATATATTCCTACTTATGCATATATGCACATACATATAT  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGTGTACATGCATTTATTCCTACTTATGCATATATGCACATACATATAT  186

seq1  ATATAGACATATACATATACACACATATACACACATTTTGTGGTAGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACATATACATATACACACATATACACACATTTTGTGGTAGGATG  236

seq1  AGAGCCCAACAGGAATACTTTATTTCTTCTCTCTGGCAATTCATACCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAGCCCAACAGGAATACTTTATTTCTTCTCTCTGGCAATTCATACCTCT  286

seq1  TTAGACAAAAGTTCTTTACAAAATTACCTCATAGATAAAATGTTACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAAAAGTTCTTTACAAAATTACCTCATAGATAAAATGTTACAAAG  336

seq1  AATAGGAATTACAGAAAGATGTTGATAGTAAGTTCAAAGTAGTGTTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAATTACAGAAAGATGTTGATAGTAAGTTCAAAGTAGTGTTTCAT  386

seq1  TCTGTAAGCTCATTGTAAGTTCAAAGCATTGTCATTTAAAGATGT-AAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTGTAAGCTCATTGTAAGTTCAAAGCATTGTCATTTAAAGATGTAAAAG  436

seq1  TACCACATGTTTGAGTATGATTATTTTCTGACATTTTCTTCTCAGAGTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATGTTTGAGTATGATTATTTTCTGACATTTTCTTCTCAGAGTCA  486

seq1  TCAATTCCTCTTCATTTTCAGTTTTTTTGTCAGCTCACCCTTTGAACTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCTCTTCATTTTCAGTTTTTTTGTCAGCTCACCCTTTGAACTAA  536

seq1  GGGACATTCTCAGTTCTTTCATGGTTTCACTTAAAACAATAACAGCTCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATTCTCAGTTCTTTCATGGTTTCACTTAAAACAATAACAGCTCAA  586

seq1  AACATAAAGAAATTTTTGTGTATACTCTATCAGCTAATTTGTATTATTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAGAAATTTTTGTGTATACTCTATCAGCTAATTTGTATTATTTT  636

seq1  TGTTTTTGAAACACCAGAAAATAAGGAGTCCTTTTTGTTGTTGTTTATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGAAACACCAGAAAATAAGGAGTCCTTTTTGTTGTTGTTTATTG  686

seq1  TTTATTGTTTGTTTGTTTGTTTACCTTAAAGAATGCTTGATATACTCAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTTTGTTTGTTTGTTTACCTTAAAGAATGCTTGATATACTCAGT  736

seq1  GACACTCCACTGGAGAAAATTTGTTTCTCTTCTTTTCAATGGGTATCAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCACTGGAGAAAATTTGTTTCTCTTCTTTTCAATGGGTATCAAT  786

seq1  TGCAAATACCTTCTTGGTTAGGTGTAGAAATGTGTGTCCATTTCATCTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATACCTTCTTGGTTAGGTGTAGAAATGTGTGTCCATTTCATCTTC  836

seq1  TAAGTGCTGGGATTTTGACTGGTTTCAACCCATTCTGGTCTTATGTGTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTGGGATTTTGACTGGTTTCAACCCATTCTGGTCTTATGTGTAC  886

seq1  TGTCAGTCTTGGAATTC  916
      |||||||||||||||||
seq2  TGTCAGTCTTGGAATTC  903