BAC Information

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BAC

Clone NameB6Ng01-015C18
Chromosome4 (Build37)X (Build37)
Map Location 49,291,014 - 49,292,078144,872,572 - 144,872,885
singlet/doubletsingletsinglet
Overlap geneE130309F12Rik
Upstream geneTxndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015C18.bB6Ng01-015C18.g
ACCDH849505DH849506
length1,063440
definitionDH849505|Mus musculus domesticus DNA, BAC clone: B6Ng01-015C18, 5' end.DH849506|Mus musculus domesticus DNA, BAC clone: B6Ng01-015C18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,291,014 - 49,292,078)(144,872,572 - 144,872,885)
sequence
gaattctgtgcctctggatccccagcttctcctaaaacttgggaaggtgg
ctacagcagatgaaggctccctggtgcgcatgggcacacacacaaacaca
cacacacacacacacacacacacacacacacacacacacacacttcacta
ctacctggagccctgatgccccagcttgtatcacatcagaaatcaatgat
ctacaattactctaaattttatgtttacttgtttggctttgacttccttg
ttccaatttgtgtgacattatctttaatcagcagagatttggggagaaac
actacactatcaaccactggaggctgggtttctagttctgctggcatctg
cctctcaaatccttgtggcactattttcgtgctatacgcgttctcgtatt
agactgttgttctgagagaagaaggcctggaaaaagtccctggcctgtgc
tctccctacactttattgtcatccctcatccataattgcctctgtcacag
tgacagcttcacctcttccaccagtgctcagtctggctcagtcacaccat
ctgtttgtgtgacaaccacattatgggctccctctatgcatccctaagtg
ggcacgggaaggaatataagatggcatgagtgccagctgggctctggttg
cacaaacctagacagtgatgaatcatgacccaggacaaggaggatggctg
atggctaattgtagatcaccatcagtgcaatgggactggcctctctgctc
atggacacagcttatcctgtgttgtttctgttcctgtaaaacagaaatga
tttctttttaattacgctgtcacaaaagagttttcagtgggggaagaata
gtacaacatgagttctgagttgttctacttttcccttctctaaaatagta
gaagacacttgtgaggattccagagttacttaacattggcaggaatgaac
tttcttagatttttccagtggaaagactaaggcagtatgtcttggtgggt
tcattataagctgtctgaaatttctgctacatccacccagcaagcttacc
aatttccgttctt
gaattcccaagaaactgaatgaggcattaccaaagggcagggatggaagc
aaaataaaactggtatgttagtacacaggctgacacacaagcctgaatgc
aagcaaagcttaagaaaaaagcagggggggggggatcgacagaacatttc
tactaggaaaaatataaacaaagaaacaaagaggaaagtggaaatgtgag
ttacatttgtagttttttttttaaattaggtattttctccatttacattt
ccagtgctatcccaaaagtcccccctactctcccccacccactcccctac
cctcccactcccacttcttggccctggcgttcccctatactgaggcttat
aaagtttgcacggccaacgggcctctctttccactgatggccgacttggg
tactttctctagctcctccattgggggccctgtgatccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_49291014_49292078
seq2: B6Ng01-015C18.b_44_1106

seq1  GAATTCTGTGCCTCTGGATCCCCAGCTTCTCCTAAAACTTGGGAAGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCCTCTGGATCCCCAGCTTCTCCTAAAACTTGGGAAGGTGG  50

seq1  CTACAGCAGATGAAGGCTCCCTGGTGCGCATGGGCACACACACAAACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCAGATGAAGGCTCCCTGGTGCGCATGGGCACACACACAAACACA  100

seq1  CACACACACACACACACACACACACACACACACACACACACACTTCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACTTCACTA  150

seq1  CTACCTGGAGCCCTGATGCCCCAGCTTGTATCACATCAGAAATCAATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGGAGCCCTGATGCCCCAGCTTGTATCACATCAGAAATCAATGAT  200

seq1  CTACAATTACTCTAAATTTTATGTTTACTTGTTTGGCTTTGACTTCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATTACTCTAAATTTTATGTTTACTTGTTTGGCTTTGACTTCCTTG  250

seq1  TTCCAATTTGTGTGACATTATCTTTAATCAGCAGAGATTTGGGGAGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTTGTGTGACATTATCTTTAATCAGCAGAGATTTGGGGAGAAAC  300

seq1  ACTACACTATCAACCACTGGAGGCTGGGTTTCTAGTTCTGCTGGCATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACTATCAACCACTGGAGGCTGGGTTTCTAGTTCTGCTGGCATCTG  350

seq1  CCTCTCAAATCCTTGTGGCACTATTTTCGTGCTATACGCGTTCTCGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAAATCCTTGTGGCACTATTTTCGTGCTATACGCGTTCTCGTATT  400

seq1  AGACTGTTGTTCTGAGAGAAGAAGGCCTGGAAAAAGTCCCTGGCCTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTGTTCTGAGAGAAGAAGGCCTGGAAAAAGTCCCTGGCCTGTGC  450

seq1  TCTCCCTACACTTTATTGTCATCCCTCATCCATAATTGCCTCTGTCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTACACTTTATTGTCATCCCTCATCCATAATTGCCTCTGTCACAG  500

seq1  TGACAGCTTCACCTCTTCCACCAGTGCTCAGTCTGGCTCAGTCACACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTTCACCTCTTCCACCAGTGCTCAGTCTGGCTCAGTCACACCAT  550

seq1  CTGTTTGTGTGACAACCACATTATGGGCTCCCTCTATGCATCCCTAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTGTGACAACCACATTATGGGCTCCCTCTATGCATCCCTAAGTG  600

seq1  GGCACGGGAAGGAATATAAGATGGCATGAGTGCCAGCT-GGCTCTGGTTG  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCACGGGAAGGAATATAAGATGGCATGAGTGCCAGCTGGGCTCTGGTTG  650

seq1  CACAAACCTAGACAGTGATGAATCATGACCCAGGACAAGGAGGATGGCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCTAGACAGTGATGAATCATGACCCAGGACAAGGAGGATGGCTG  700

seq1  ATGGCTAATTGTAGATCACCATCAGTGCAATGGGACTGGCCTCTCTGCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAATTGTAGATCACCATCAGTGCAATGGGACTGGCCTCTCTGCTC  750

seq1  ATGGACACAGCTTATCCTGTGTTGTTTCTGTTCCTGTAAAAACAGAAATG  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGGACACAGCTTATCCTGTGTTGTTTCTGTTCCTGT-AAAACAGAAATG  799

seq1  ATTTCTTTTT-ATTACGCTGTCACAAAAGAGTTTTCAGT-GGGGAAGAAT  847
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  ATTTCTTTTTAATTACGCTGTCACAAAAGAGTTTTCAGTGGGGGAAGAAT  849

seq1  AGTACAACATGAGTTCTGAGTTGTTCTACTTTTCCCTTCTCTAAAGAATA  897
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  AGTACAACATGAGTTCTGAGTTGTTCTACTTTTCCCTTCTCTAA--AATA  897

seq1  GTAGAGAGCAC-TGTGAGGAATTCAAGAGTTACTTAACAGTGGCAGGAAT  946
      |||||   ||| ||||||| |||| |||||||||||||| ||||||||||
seq2  GTAGAAGACACTTGTGAGG-ATTCCAGAGTTACTTAACATTGGCAGGAAT  946

seq1  GAACTT--CTAGATTTTT-CAGTGGGAAAAGAGCTAAGGCAAGTTATGTC  993
      ||||||   ||||||||| ||||||  ||||| ||||||||   ||||||
seq2  GAACTTTCTTAGATTTTTCCAGTGG--AAAGA-CTAAGGCA--GTATGTC  991

seq1  -TGGTGGG-TCAGTATAAGCTG-CTGAAATTCCTGCTTACATCCACCCAG  1040
       ||||||| ||| ||||||||| |||||||| |||| |||||||||||||
seq2  TTGGTGGGTTCATTATAAGCTGTCTGAAATTTCTGC-TACATCCACCCAG  1040

seq1  CAAGCCTTTACCATTTTCCGTTCTT  1065
      |||||  |||||| |||||||||||
seq2  CAAGC--TTACCAATTTCCGTTCTT  1063

seq1: chrX_144872572_144872885
seq2: B6Ng01-015C18.g_301_507

seq1  TTTCTTCATTTACATTTCAAATGCTATCCCAAAATTCCCCTATACCCTTC  50
      ||||| |||||||||||| | ||||||||||||| |||||  ||| || |
seq2  TTTCTCCATTTACATTTCCAGTGCTATCCCAAAAGTCCCCCCTACTCTCC  50

seq1  CTCTGCCCTGTTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCATT  100
      | |   ||   |||||||||| ||||||||||||||||||||||||| ||
seq2  CCC--ACCCACTCCCCTACCCTCCCACTCCCACTTCTTGGCCCTGGCGTT  98

seq1  CCCCTGTACTGGGGCATATAAGTTTTGCAATACCAAGGGGCCTCTCCTCC  150
      ||||| ||||| ||| |||||  ||||||   |||| ||||||||| | |
seq2  CCCCTATACTGAGGCTTATAAAGTTTGCACGGCCAACGGGCCTCTCTTTC  148

seq1  CAATGATGGATGACTAGGCCATCTTCTGGTTACATATGCAGCTAGAGATA  200
      || ||||||  ||                                     
seq2  CACTGATGGCCGA-------------------------------------  161

seq1  CAAGCTCTGGGGGTACTGGATAGTTCATATTGTTATTCCACCTATAGGGT  250
                                                        
seq2  --------------------------------------------------  161

seq1  TGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGTTCCTCCATTGGGG  300
                        |||||||||||||||||| |||||||||||||
seq2  ------------------CTTGGGTACTTTCTCTAGCTCCTCCATTGGGG  193

seq1  GCCCTGTGTTCCAT  314
      |||||||| |||||
seq2  GCCCTGTGATCCAT  207