BAC Information

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BAC

Clone NameB6Ng01-015J07
Chromosome4 (Build37)
Map Location 45,416,262 - 45,604,983
singlet/doubletdoublet
Overlap geneMcart1, Shb, LOC100040140
Upstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32
Downstream geneLOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015J07.bB6Ng01-015J07.g
ACCDH849796DH849797
length1,100449
definitionDH849796|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J07, 5' end.DH849797|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,416,262 - 45,417,361)(45,604,529 - 45,604,983)
sequence
gaattcttcagtctcctgccctagcaggagcttgacttctagctcccgtc
ctgcacctacaattgaaacttatcttgaacttgacttctagctcccgtcc
tgcagctacaattggaacttatcttgaactttggtccaatgttctcaggt
agctatgaaacgtcagagatactggaacctgaggctgaggaacacagcag
ccttagaacctacgagttgcctgaacgaaaatcccagctctatcacacat
ggacctgtgagcttcggcaagtcagagctgtgtggtttagaagacaggga
agttccctacctcagaggccggccggttcactgagtgaacagagtgccct
tgagagtgaggtggagtacagaggtgctcgatgagactgaacccttactg
ttctcctctgaagtgctgcccctcaggtggcagcctgataaatccattat
gtgtaaaaatatcaggtgagaaatgcacatatttatgtttggtactgggg
actgaacccagggcttcgtgtatggtaatctcattcactgactgcctgtg
tccctgagagttaagacaccgaatatacacggaggcactggctgcttacc
tctgtgactgtgtggctaacagaaggtttggctcactgctgcatcgcatc
aaaagagtacagtgtcccttttgccactagccagtgaaaattatttaagg
tgcagttcctactgaacactttacttctgcacaagagagtcaaacagggc
tgatgtcactctccgtgcacagcagagacaggcacagcactgcgagtggc
actatgtcaatgcccatccggctggccttagagcacggggtgacaccttg
gtttcatctgagtaacatttgacttttggtgcccgacaagccaggtccca
gccactgagccacccttccacctcattggtggcattctatggtctacccc
caccactattcccgagacccaggtcccagccactgagccaccctttccac
ctccatttgttgcactctatggtctacccccaccactattcccgagaccc
agtttcttgatttttacatccaggttccattggctgggttcaaccggctt

ctaggatgggaggagtgtagctaaatctcagagaagtacagcccacccca
gcccagccacaccaaccagccctgctcaccctattcaaaccctccctcaa
acagtcaagtgataaagggtcatccccagaaatgggaacctcattgatat
ggtctcttgctggagccccccaaaagggaagttcctggaacatcgtccac
cccgcctcttggcagcccctcccacttcattttcactcccttggatgatg
gacaatgaggcaggaagagcccaagggaggctgggaactaggaactggtg
ggggggggggatccacagatgacagaagtctctgcttcagggttcagctc
tgccactgtccactctgtgtgccttctcgtccccgggcctttcttcttcg
aggcctctctccaccctgggtctgtgggtctgcacttacctcagtgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45416262_45417361
seq2: B6Ng01-015J07.b_48_1147

seq1  GAATTCTTCAGTCTCCTGCCCTAGCAGGAGCTTGACTTCTAGCTCCCGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTCTCCTGCCCTAGCAGGAGCTTGACTTCTAGCTCCCGTC  50

seq1  CTGCACCTACAATTGAAACTTATCTTGAACTTGACTTCTAGCTCCCGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTACAATTGAAACTTATCTTGAACTTGACTTCTAGCTCCCGTCC  100

seq1  TGCAGCTACAATTGGAACTTATCTTGAACTTTGGTCCAATGTTCTCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTACAATTGGAACTTATCTTGAACTTTGGTCCAATGTTCTCAGGT  150

seq1  AGCTATGAAACGTCAGAGATACTGGAACCTGAGGCTGAGGAACACAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGAAACGTCAGAGATACTGGAACCTGAGGCTGAGGAACACAGCAG  200

seq1  CCTTAGAACCTACGAGTTGCCTGAACGAAAATCCCAGCTCTATCACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAACCTACGAGTTGCCTGAACGAAAATCCCAGCTCTATCACACAT  250

seq1  GGACCTGTGAGCTTCGGCAAGTCAGAGCTGTGTGGTTTAGAAGACAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGTGAGCTTCGGCAAGTCAGAGCTGTGTGGTTTAGAAGACAGGGA  300

seq1  AGTTCCCTACCTCAGAGGCCGGCCGGTTCACTGAGTGAACAGAGTGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTACCTCAGAGGCCGGCCGGTTCACTGAGTGAACAGAGTGCCCT  350

seq1  TGAGAGTGAGGTGGAGTACAGAGGTGCTCGATGAGACTGAACCCTTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGAGGTGGAGTACAGAGGTGCTCGATGAGACTGAACCCTTACTG  400

seq1  TTCTCCTCTGAAGTGCTGCCCCTCAGGTGGCAGCCTGATAAATCCATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTGAAGTGCTGCCCCTCAGGTGGCAGCCTGATAAATCCATTAT  450

seq1  GTGTAAAAATATCAGGTGAGAAATGCACATATTTATGTTTGGTACTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAAATATCAGGTGAGAAATGCACATATTTATGTTTGGTACTGGGG  500

seq1  ACTGAACCCAGGGCTTCGTGTATGGTAATCTCATTCACTGACTGCCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCCAGGGCTTCGTGTATGGTAATCTCATTCACTGACTGCCTGTG  550

seq1  TCCCTGAGAGTTAAGACACCGAATATACACGGAGGCACTGGCTGCTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGAGTTAAGACACCGAATATACACGGAGGCACTGGCTGCTTACC  600

seq1  TCTGTGACTGTGTGGCTAACAGAAGGTTTGGCTCACTGCTGCATCGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACTGTGTGGCTAACAGAAGGTTTGGCTCACTGCTGCATCGCATC  650

seq1  AAAAGAGTACAGTGTCCCTTTTGCCACTAGCCAGTGAAAATTATTTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTACAGTGTCCCTTTTGCCACTAGCCAGTGAAAATTATTTAAGG  700

seq1  TGCAGTTCCTACTGAACACTTTACTTCTGCACAAGAGAGTCAAACAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTCCTACTGAACACTTTACTTCTGCACAAGAGAGTCAAACAGGGC  750

seq1  TGATGTCACTCTCCGTGCACAGCAGAGACAGGCACAGCACTGCGAGTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCACTCTCCGTGCACAGCAGAGACAGGCACAGCACTGCGAGTGGC  800

seq1  ACTATGTCAATGCCCATCCGGCTGGCCTTAGAGCAGGGGGTGACACCTTG  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTATGTCAATGCCCATCCGGCTGGCCTTAGAGCACGGGGTGACACCTTG  850

seq1  GTTTCATCTGAGTAACATTTGACTTTTGGTGCCCGACAAGCCAGGTCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATCTGAGTAACATTTGACTTTTGGTGCCCGACAAGCCAGGTCCCA  900

seq1  GCCACTGAGCCACCCTTCCCACCTCCATTGGTGGCATTCTATGGTCTACC  950
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  GCCACTGAGCCACCCTT-CCACCT-CATTGGTGGCATTCTATGGTCTACC  948

seq1  CCCACCACTATTCCCGAGACCCCAGGTCCCAGCCACTGAGCCACCCTTCC  1000
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  CCCACCACTATTCCCGAGA-CCCAGGTCCCAGCCACTGAGCCACCCTTTC  997

seq1  CACCTCCATTGGTGGCACTCTATGGTCTACCCCCACCACTATTCCCGAGA  1050
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  CACCTCCATTTGTTGCACTCTATGGTCTACCCCCACCACTATTCCCGAGA  1047

seq1  CCCCAGTTTC-TGATTTTCACAT-CAAGTTCCATTGTCT--GTTCAACCG  1096
       ||||||||| ||||||| |||| || ||||||||| ||  |||||||||
seq2  -CCCAGTTTCTTGATTTTTACATCCAGGTTCCATTGGCTGGGTTCAACCG  1096

seq1  GCTT  1100
      ||||
seq2  GCTT  1100

seq1: chr4_45604529_45604983
seq2: B6Ng01-015J07.g_70_524 (reverse)

seq1  GAGCACTGAGGTAAGTGCAGACCCACAGACCCAGGGTGGAGAGAGGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGAGGTAAGTGCAGACCCACAGACCCAGGGTGGAGAGAGGCCTC  50

seq1  GAAGGAGAAAGGCCCGGGGACGAGAAGGCACACAGCGTGGACAGTGGCAG  100
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAGAAGAAAGGCCCGGGGACGAGAAGGCACACAGAGTGGACAGTGGCAG  100

seq1  AGCTGAACCCTGAAGCAGAGACTTCTGTCATCTGTGGATCCCCCCCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACCCTGAAGCAGAGACTTCTGTCATCTGTGGATCCCCCCCCCCC  150

seq1  ACCAGTTCCTAGTTCCCAGCCTCCCTTGGGCTCTTCCTGCCTCATTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTCCTAGTTCCCAGCCTCCCTTGGGCTCTTCCTGCCTCATTGTCC  200

seq1  ATCATCCAAGGGAGTGAAAATGAAGTGGGAGGGGCTGCCAAGAGGCGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCAAGGGAGTGAAAATGAAGTGGGAGGGGCTGCCAAGAGGCGGGG  250

seq1  TGGACGATGTTCCAGGAACTTCCCTTTTGGGGGGCTCCAGCAAGAGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGATGTTCCAGGAACTTCCCTTTTGGGGGGCTCCAGCAAGAGACCA  300

seq1  TATCAATGAGGTTCCCATTTCTGGGGATGACCCTTTATCACTTGACTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATGAGGTTCCCATTTCTGGGGATGACCCTTTATCACTTGACTGTT  350

seq1  TGAGGGAGGGTTTGAATAGGGTGAGCAGGGCTGGTTGGTGTGGCTGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGGGTTTGAATAGGGTGAGCAGGGCTGGTTGGTGTGGCTGGGCT  400

seq1  GGGGTGGGCTGTACTTCTCTGAGATTTAGCTACACTCCTCCCATCCTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGCTGTACTTCTCTGAGATTTAGCTACACTCCTCCCATCCTAGG  450

seq1  AATTC  455
      |||||
seq2  AATTC  455