BAC Information

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BAC

Clone NameB6Ng01-016C14
Chromosome4 (Build37)
Map Location 61,680,401 - 61,747,863
singlet/doubletdoublet
Overlap geneLOC546832, OTTMUSG00000007485, Mup3
Upstream geneLOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305
Downstream geneLOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016C14.bB6Ng01-016C14.g
ACCDH850212DH850213
length1,045975
definitionDH850212|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C14, 5' end.DH850213|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,680,401 - 61,681,301)(61,746,888 - 61,747,863)
sequence
gaattccacacccctaagccccataccccataaaagcccctggctttcaa
gcctcggggccgacatccgttatctcctgtgtgggatgcatgtcggcccg
gagctccgtaattaaacgtcctcatgtaattacagcgagtgggtcttcgt
gtttctttgggtgctctcacactcccgagactagagaaggggtccccgaa
agggggtcttacagttgtcattttaaaaaacgtgtcatgaaccagcccag
gaaatcaggcccctaaagatacttctaaattgggataatattttatataa
ttcttatcctagaaagtagacttataagaggtaagattaaaaacaatgtc
tcttcaatgaagcattaaaagttgaactgtcatgcattcatatataagaa
ttgtttgccaaactttgtaaagtgaaagtaatcctttcggtgttgatttt
aaagagaatggactgtttaaaattgggttttgttttccaaaacttatagt
tatgctctagtattaaataaaaacttaaaaattatggttaaaattgccag
tgttccatttgctgcaggttgcagtttgattggaagctcagggttcttaa
ctcacccatattttgttattacaataattacaacagtaataaatattaaa
accagatggggtcagtatgggcaggctgcccctattacacaagttttatt
ggatacagtggtagaagcaaaatttaaccccctatgattggaaaggagat
ctcagtgaaaatttattggtatcaaacaggctcctgattaacactttcag
gattttgtggatatgttattaaacagcaagcagaatctctggagattctc
aagcagggtttttttgtttgtttggttggttttgtattttttttttctca
caattgtcttatgagaacgctaatgctgctctctgtggccattcgggcat
atgaaacaaagaacaaacttatcaggatatatttttttccttgtgcagaa
atttgaccctcatatagtcagtggttggctattgttgctgctttg
gaattccttagtctttaaattccatttaatgtaagtgagatgctcttggc
tgagaaagaggaaatgaaaacctggtatggtctcatgcctacaaacacac
ttggggttgcagagagataactctcagtatgcacatgtgcacacacgtac
tgagcctgtatccaaaactagaatgctccatgtgacactgaaccaagatc
tcataaccaggggttttacaaaagtcagagacaagggttggtgacaggaa
ttaattcactaggagttcgataaggaaagatcagagacactgctgatacc
acattaatgagacagtatatcacaagttaagattatgtgatcatgaatta
aaattttcttactagttgttagccaaataaatccaccctattctacttgt
gttttcctgcagtaaaggagaaaataataattctcctctgaggatctggg
agccacatcaggcaacattacagagtgctgatttaaggcagatggtggct
atctggctgataatctacaccactggctgaagcacagcaatggtgaaact
tggaagtagttgcagttgtaatagggatgagaagtgattgtcgttttctt
ttttaaaataataggcaaatttgtgattgctaaaacatctgatataaata
aaataacataaacaaaagctttttgctaattttacaaataaagtcaaaag
taaaatggaataaaaaactggagatatatatagtgtagatggtcaagaag
ccagacagatcaaaatcccttatataaaagatcactctattttacagtgt
aaatgaagagtgcaccgaaatgactgcgattggtgaacaaacagaaaagg
ctggcatatattatatgaactgtaagtatataaaaagtctatatatctat
tcataaagagttaagtaaccctaatacctttatcctctctctctctctct
ctctctttctctctctctttctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_61680401_61681301
seq2: B6Ng01-016C14.b_187_1090

seq1  GGTCTTCGTGTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCGTGTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGAAGGG  50

seq1  GTCCCCGAAAGGGGGTCTTACAGTTGTCATTTTAAAAAACGTGTCATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCGAAAGGGGGTCTTACAGTTGTCATTTTAAAAAACGTGTCATGAA  100

seq1  CCAGCCCAGGAAATCAGGCCCCTAAAGATACTTCTAAATTGGGATAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAGGAAATCAGGCCCCTAAAGATACTTCTAAATTGGGATAATAT  150

seq1  TTTATATAATTCTTATCCTAGAAAGTAGACTTATAAGAGGTAAGATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAATTCTTATCCTAGAAAGTAGACTTATAAGAGGTAAGATTAAA  200

seq1  AACAATGTCTCTTCAATGAAGCATTAAAAGTTGAACTGTCATGCATTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTCTCTTCAATGAAGCATTAAAAGTTGAACTGTCATGCATTCAT  250

seq1  ATATAAGAATTGTTTGCCAAACTTTGTAAAGTGAAAGTAATCCTTTCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAATTGTTTGCCAAACTTTGTAAAGTGAAAGTAATCCTTTCGGT  300

seq1  GTTGATTTTAAAGAGAATGGACTGTTTAAAATTGGGTTTTGTTTTCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTTAAAGAGAATGGACTGTTTAAAATTGGGTTTTGTTTTCCAAA  350

seq1  ACTTATAGTTATGCTCTAGTATTAAATAAAAACTTAAAAATTATGGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAGTTATGCTCTAGTATTAAATAAAAACTTAAAAATTATGGTTAA  400

seq1  AATTGCCAGTGTTCCATTTGCTGCAGGTTGCAGTTTGATTGGAAGCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCAGTGTTCCATTTGCTGCAGGTTGCAGTTTGATTGGAAGCTCAG  450

seq1  GGTTCTTAACTCACCCATATTTTGTTATTACAATAATTACAACAGTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTAACTCACCCATATTTTGTTATTACAATAATTACAACAGTAATA  500

seq1  AATATTAAAACCAGATGGGGTCAGTATGGGCAGGCTGCCCCTATTACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAAACCAGATGGGGTCAGTATGGGCAGGCTGCCCCTATTACACA  550

seq1  AGTTTTATTGGATACAGTGGTAGAAGCAAAATTTAACCCCCTATGATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTGGATACAGTGGTAGAAGCAAAATTTAACCCCCTATGATTGG  600

seq1  AAAGGAGATCTCAGTGAAAATTTATTGGTATCAAACAGGCTCCTGATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGATCTCAGTGAAAATTTATTGGTATCAAACAGGCTCCTGATTAA  650

seq1  CACTTTCAGGATTTTGTGGATATGTTATTAAACAGCAAGCAGAATCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAGGATTTTGTGGATATGTTATTAAACAGCAAGCAGAATCTCTG  700

seq1  GAGATTCTCAAGCAGGGTTTTTTTGTTTGTTTGGTTGGTTTTGTATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTCAAGCAGGGTTTTTTTGTTTGTTTGGTTGGTTTTGTATTTTT  750

seq1  TTTTTCTCACAATTGTCTTATGAGAACGCTAATGCTGCTCTCTGTGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCACAATTGTCTTATGAGAACGCTAATGCTGCTCTCTGTGGCCA  800

seq1  TTCGGGCATATGAAACAAAG-ACAAACTTATCAGGATATA--TTTTTCCT  847
      |||||||||||||||||||| |||||||||||||||||||  ||||||||
seq2  TTCGGGCATATGAAACAAAGAACAAACTTATCAGGATATATTTTTTTCCT  850

seq1  TGTGCAGAAATTTGACCCTCATATAATCAGTGTTTGCCTATTGTTGCTGC  897
      ||||||||||||||||||||||||| |||||| ||| |||||||||||||
seq2  TGTGCAGAAATTTGACCCTCATATAGTCAGTGGTTGGCTATTGTTGCTGC  900

seq1  TTTG  901
      ||||
seq2  TTTG  904

seq1: chr4_61746888_61747863
seq2: B6Ng01-016C14.g_69_1043 (reverse)

seq1  GAGAGAAAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGGATAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGGATAAAGGT  50

seq1  ATTAAGGTTTACTTAACTCCTTATGAATAGATATATAGACTTTTTATATA  100
      ||| ||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  ATT-AGGGTTACTTAACTCTTTATGAATAGATATATAGACTTTTTATATA  99

seq1  CTTACAGTTCATATAATATATGCCAGCCTTTTCTGTTTGTTCACCAATCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTTCATATAATATATGCCAGCCTTTTCTGTTTGTTCACCAATCG  149

seq1  CAGTCATTTCGGTGCACTCTTCATTTACACTGTAAAATAGAGTGATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATTTCGGTGCACTCTTCATTTACACTGTAAAATAGAGTGATCTTT  199

seq1  TATATAAGGGATTTTGATCTGTCTGGCTTCTTGACCATCTACACTATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGGGATTTTGATCTGTCTGGCTTCTTGACCATCTACACTATATA  249

seq1  TATCTCCAGTTTTTTATTCCATTTTACTTTTGACTTTATTTGTAAAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCAGTTTTTTATTCCATTTTACTTTTGACTTTATTTGTAAAATTA  299

seq1  GCAAAAAGCTTTTGTTTATGTTATTTTATTTATATCAGATGTTTTAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAGCTTTTGTTTATGTTATTTTATTTATATCAGATGTTTTAGCAA  349

seq1  TCACAAATTTGCCTATTATTTTAAAAAAGAAAACGACAATCACTTCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATTTGCCTATTATTTTAAAAAAGAAAACGACAATCACTTCTCAT  399

seq1  CCCTATTACAACTGCAACTACTTCCAAGTTTCACCATTGCTGTGCTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTACAACTGCAACTACTTCCAAGTTTCACCATTGCTGTGCTTCAG  449

seq1  CCAGTGGTGTAGATTATCAGCCAGATAGCCACCATCTGCCTTAAATCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGTGTAGATTATCAGCCAGATAGCCACCATCTGCCTTAAATCAGC  499

seq1  ACTCTGTAATGTTGCCTGATGTGGCTCCCAGATCCTCAGAGGAGAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAATGTTGCCTGATGTGGCTCCCAGATCCTCAGAGGAGAATTAT  549

seq1  TATTTTCTCCTTTACTGCAGGAAAACACAAGTAGAATAGGGTGGATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCCTTTACTGCAGGAAAACACAAGTAGAATAGGGTGGATTTAT  599

seq1  TTGGCTAACAACTAGTAAGAAAATTTTAATTCATGATCACATAATCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAACAACTAGTAAGAAAATTTTAATTCATGATCACATAATCTTAA  649

seq1  CTTGTGATATACTGTCTCATTAATGTGGTATCAGCAGTGTCTCTGATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGATATACTGTCTCATTAATGTGGTATCAGCAGTGTCTCTGATCTT  699

seq1  TCCTTATCGAACTCCTAGTGAATTAATTCCTGTCACCAACCCTTGTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATCGAACTCCTAGTGAATTAATTCCTGTCACCAACCCTTGTCTCT  749

seq1  GACTTTTGTAAAACCCCTGGTTATGAGATCTTGGTTCAGTGTCACATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGTAAAACCCCTGGTTATGAGATCTTGGTTCAGTGTCACATGGA  799

seq1  GCATTCTAGTTTTGGATACAGGCTCAGTACGTGTGTGCACATGTGCATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTAGTTTTGGATACAGGCTCAGTACGTGTGTGCACATGTGCATAC  849

seq1  TGAGAGTTATCTCTCTGCAACCCCAAGTGTGTTTGTAGGCATGAGACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTATCTCTCTGCAACCCCAAGTGTGTTTGTAGGCATGAGACCAT  899

seq1  ACCAGGTTTTCATTTCCTCTTTCTCAGCCAAGAGCATCTCACTTACATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTTTCATTTCCTCTTTCTCAGCCAAGAGCATCTCACTTACATTA  949

seq1  AATGGAATTTAAAGACTAAGGAATTC  976
      ||||||||||||||||||||||||||
seq2  AATGGAATTTAAAGACTAAGGAATTC  975