BAC Information

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BAC

Clone NameB6Ng01-016E08
Chromosome6 (Build37)4 (Build37)
Map Location 31,545,569 - 31,545,99032,749,341 - 32,750,488
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCpa5, Cpa1, Tsga14, Mest, Copg2, Copg2, Tsga13, Klf14, LOC100038973, AB041803, Mkln1, Podxl, EG619959
Downstream geneLOC620104, 1700012A03Rik, Plxna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016E08.bB6Ng01-016E08.g
ACCDH850285DH850286
length5691,133
definitionDH850285|Mus musculus domesticus DNA, BAC clone: B6Ng01-016E08, 5' end.DH850286|Mus musculus domesticus DNA, BAC clone: B6Ng01-016E08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,545,569 - 31,545,990)(32,749,341 - 32,750,488)
sequence
tccgctgactccctctgggcctaggattgttttagttgggagattcttaa
ttactttgatctcgtcgagcattgtatatctagcagtggctctcgacctt
cctaaagctctggagttttaatacaagttccttatgttgtggcaccccaa
acataagattactttgataggctgtgtgtatcttgaaattcatccatttc
ttttattttccagcttgatacaagatagatttttttaaagtatgttttta
tagttctctgattttcttccatgtctatcgtaatgtcttcctttatcatc
tcttagtttttggtttagccaaaagtttatcaatctcattaatctttcaa
agtaccaactctgtttcattgattttttcttttttactgttttcttcatt
tttgtttcattaatctcaaccataattttggctatctcttcctacctact
cttttctttctttctttctttcttcctttcttcctttcttcctttctttc
cttctttccttctttccttctttccttctttgttttttggtttgtttggt
tggttggttggttttggtt
gaattcaactcccaggaaacacatggtggaaggagagaactgacccaatc
tgtgctctgacctctgggccaccctctatgaataaatgaatgtaaaacaa
caacaacgacaacaaaacttaaaacaaaacaaaaacaaaaaaacaaaaat
tgggtctggagagacagttcagcatttaagaacagctgttctgagttcaa
ttcccagcaaccacatgggatggatcatgaccatctataaagggatccgg
tgccttgttctggcatgactcctacattaaacaaaacaaaacaaaacaaa
acaaaacaaaaacaaacaaaaaaaacccctcataaataaattttaaagac
tcaaactctgaagcctcttacctcaacctcccaagagccaccacactaga
cttgagaaagaggccatcatcttacagagaaatatgaatcaaatggctac
tcacggaagaacgtcaggatggctaccaatgagtttgctcattgacacac
tgagtcgttcatgcagatcgtggttgacttggcctccagttttaatggct
ttagcatttctttccagcaaatccaaaaggatagggcgcaactggcgacc
aagcaaaagggtatagtctttatctaggagcaactgtgccaaggaatcca
ggatgcattggcgatcttgaggtgtccacacctgagtgagaagcaagaca
aatgtctatgtaaaccatattcttttgtaccagaaggatcagaacactaa
cttagaatcaaaacactaattcctagatttcttaagtgacttcataatac
aacgaagcatggttttgttacaataaaagatgagtttgttactgaaaagt
tccagtctactgaggctatacacaagaaaacccaatacttgggattctat
tttaaatgatatgcaacttcactcaacagtagatgttgcggtgtcctcaa
cgctgtccagaagaatgtaaaacctttgtgttctcagttggcctatacgc
acgagggtgggcttaattcccagtaccagtaacaaacgtacgtatttctt
ttcagcagatgcagagcattaaagttgcatgttgattaccaagttttcca
ttttatatgctgtaaaggtattcatagtactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_31545569_31545990
seq2: B6Ng01-016E08.b_502_618 (reverse)

seq1  AACCAAAAAAACAACAACCCTAACCAACCAACCAAACAAACAAAGAACAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAATCCCACTCCCCCCACCAAACACATAAAGAAAAAGAAACAAACTTCAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCCAAAGAGAAGGGTCAAGGTTAAAGGCACTGGCTGCCAAGCCCACAACC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGAGCTCAGCTCTGTCCCGGGATCCTGTGGTGGAAGGGGAGAGAGAACAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GCACTGACTCCTAGCGTTTTGTTTTTCTTTTTTTCTTTCTTTCTTCTTCT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTTTTTTGGCAGGCAGGTTTCTGAGTTTGAGGCTGTTTCCCTAAC  300
                                                 ||  |||
seq2  -----------------------------------------AACCAAAAC  9

seq1  AAGTACTAGGGCTGAACCTGAGAGGGTTCTATAGGAGAGAAAGAAAAGAA  350
       |  || |      ||||  | |     | | |  | | |||| || |||
seq2  CA--ACCA---ACCAACCAAACA---AACCAAA--AAACAAAG-AAGGAA  48

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAGGAAAGGA  400
      |||| ||||||| ||||||| ||||||||| ||||||||||  |||||||
seq2  AGAAGGAAAGAAGGAAAGAAGGAAAGAAAGGAAGAAAGGAA--GAAAGGA  96

seq1  AGAAAGAAAGGAAAGAAAGAAA  422
      ||||||||| ||||||||||||
seq2  AGAAAGAAA-GAAAGAAAGAAA  117

seq1: chr4_32749341_32750488
seq2: B6Ng01-016E08.g_60_1192 (reverse)

seq1  ACAGTACTTTATGGATATACTTTTACAGCATTATAAATATGAAAAACTTG  50
      |||||||  ||||   |||| ||||||||| |||||| ||| ||||||||
seq2  ACAGTAC--TATG--AATACCTTTACAGCA-TATAAA-ATGGAAAACTTG  44

seq1  TTAATCAAACCATTGCAACTTTTATATGCCCTGTGCATCTTGGCTGAAAA  100
       |||||||  || ||||||||| ||     || |||||||  |||| |||
seq2  GTAATCAA--CA-TGCAACTTTAAT----GCTCTGCATCT--GCTG-AAA  84

seq1  AGAAATACGTTACGTTTGTTACTGGTACTGGGAATTAAGCCCACCCTCGT  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACG-TACGTTTGTTACTGGTACTGGGAATTAAGCCCACCCTCGT  133

seq1  GCGTTATAGGCC-ACTGAGAACACCAGGGTTTTACATTC-TCTGGACAGC  198
      ||| |||||||| ||||||||||| | |||||||||||| ||||||||||
seq2  GCG-TATAGGCCAACTGAGAACACAAAGGTTTTACATTCTTCTGGACAGC  182

seq1  GTTGA-GACACCGCAACATCTACTGTTGAGCTGAAGTTGCATATCATTTA  247
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTGAGGACACCGCAACATCTACTGTTGAG-TGAAGTTGCATATCATTTA  231

seq1  AAATAGAATCCCAAGTATT-GGTTTTCTTGTGTATAGCCTCAGTAGACTG  296
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATAGAATCCCAAGTATTGGGTTTTCTTGTGTATAGCCTCAGTAGACTG  281

seq1  GAACTTTTCAGTAACAAACTCATCTTTTATTGTAACAAAACCATGCTTCG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTTCAGTAACAAACTCATCTTTTATTGTAACAAAACCATGCTTCG  331

seq1  TTGTATTATGAAGTCACTTAAGAAATCTAGGAATTAGTGTTTTGATTCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTATGAAGTCACTTAAGAAATCTAGGAATTAGTGTTTTGATTCTA  381

seq1  AGTTAGTGTTCTGATCCTTCTGGTACAAAAGAATATGGTTTACATAGACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTGTTCTGATCCTTCTGGTACAAAAGAATATGGTTTACATAGACA  431

seq1  TTTGTCTTGCTTCTCACTCAGGTGTGGACACCTCAAGATCGCCAATGCAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTGCTTCTCACTCAGGTGTGGACACCTCAAGATCGCCAATGCAT  481

seq1  CCTGGATTCCTTGGCACAGTTGCTCCTAGATAAAGACTATACCCTTTTGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTCCTTGGCACAGTTGCTCCTAGATAAAGACTATACCCTTTTGC  531

seq1  TTGGTCGCCAGTTGCGCCCTATCCTTTTGGATTTGCTGGAAAGAAATGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCGCCAGTTGCGCCCTATCCTTTTGGATTTGCTGGAAAGAAATGCT  581

seq1  AAAGCCATTAAAACTGGAGGCCAAGTCAACCACGATCTGCATGAACGACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATTAAAACTGGAGGCCAAGTCAACCACGATCTGCATGAACGACT  631

seq1  CAGTGTGTCAATGAGCAAACTCATTGGTAGCCATCCTGACGTTCTTCCGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTCAATGAGCAAACTCATTGGTAGCCATCCTGACGTTCTTCCGT  681

seq1  GAGTAGCCATTTGATTCATATTTCTCTGTAAGATGATGGCCTCTTTCTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCCATTTGATTCATATTTCTCTGTAAGATGATGGCCTCTTTCTCA  731

seq1  AGTCTAGTGTGGTGGCTCTTGGGAGGTTGAGGTAAGAGGCTTCAGAGTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGTGTGGTGGCTCTTGGGAGGTTGAGGTAAGAGGCTTCAGAGTTT  781

seq1  GAGTCTTTAAAATTTATTTATGAGGGGTTTTTTTTGTTTGTTTTTGTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTAAAATTTATTTATGAGGGGTTTTTTTTGTTTGTTTTTGTTTT  831

seq1  GTTTTGTTTTGTTTTGTTTTGTTTAATGTAGGAGTCATGCCAGAACAAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGTTTTGTTTAATGTAGGAGTCATGCCAGAACAAGG  881

seq1  CACCGGATCCCTTTATAGATGGTCATGATCCATCCCATGTGGTTGCTGGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGATCCCTTTATAGATGGTCATGATCCATCCCATGTGGTTGCTGGG  931

seq1  AATTGAACTCAGAACAGCTGTTCTTAAATGCTGAACTGTCTCTCCAGACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTCAGAACAGCTGTTCTTAAATGCTGAACTGTCTCTCCAGACC  981

seq1  CAATTTTTGTTTTTTTGTTTTTGTTTTGTTTTAAGTTTTGTTGTCGTTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTGTTTTTTTGTTTTTGTTTTGTTTTAAGTTTTGTTGTCGTTGT  1031

seq1  TGTTGTTTTACATTCATTTATTCATAGAGGGTGGCCCAGAGGTCAGAGCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTACATTCATTTATTCATAGAGGGTGGCCCAGAGGTCAGAGCA  1081

seq1  CAGATTGGGTCAGTTCTCTCCTTCCACCATGTGTTTCCTGGGAGTTGAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGGGTCAGTTCTCTCCTTCCACCATGTGTTTCCTGGGAGTTGAAT  1131

seq1  TC  1148
      ||
seq2  TC  1133