BAC Information

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BAC

Clone NameB6Ng01-016H23
Chromosome4 (Build37)
Map Location 59,718,406 - 59,856,887
singlet/doubletdoublet
Overlap geneE130308A19Rik, 1110054O05Rik, Snx30
Upstream geneOlfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, LOC100041592
Downstream geneSlc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016H23.bB6Ng01-016H23.g
ACCDH850442DH850443
length1,1841,103
definitionDH850442|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H23, 5' end.DH850443|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,718,406 - 59,719,621)(59,855,783 - 59,856,887)
sequence
gaattcaccttcgttggttcttaatatattgaatgacaatatattagctg
agcgttaaagtaaacttacagaactcactttgatgactaaatttcattca
agaagaaaaagatgactatataaaaataataacagctgttgtttctgtga
atctgactgagatttgattcaaagcacacagttatgtcttttttgaagac
aatgtctggaatctttattttccagatcattgtagtcttgagtatgtagt
gttcgctcttacaggaaggaatcatgtcattgtcaaaggccttattttct
cttttctcatatgtataactgggtggtaaaatgctgatttacataggaaa
acggtttttattttgcagtgaggttttctagaatgtgctctattgtcatc
attgacccacttagagaaattagcatcttcctctgtccattaggttattg
cttcttgggtggaatttaatgaatattaataactcaattcagaaggaggt
aatttattagagttttacacatttccatttttatgttatttgttttcctt
gtgctttatgtaccatacgtcttttacttcaggttgattaatagttgctt
tttgttttttgcattattatgcattttctatataagatgtcttcatattt
ttatttgtactgactaaaatatgcagtcataaagtgaagtgtaaagggaa
gagaagaactggttcctaatcagaagtttctggtgacttgtgtagcggat
atcacgattcatatcatgcccatcaaatgatgccttatgttatgtttggt
ctcagttgttgaagccagagaaattggacaagctcatgacaggtactgtc
acattcttcaattctgttgtattaatgaacagggctgactcttggatgtt
ttgagatgggttgccccatgtagccctagctatactggaacttactatgt
agaccaggccagcatgaacttacgaagtcctcctgccttgcctcccaaat
gtcatgcacctgacagacaatgcttacccaaccccttcagatgtggttcg
tgctggttagctcaatgacagggagtgtagaaaccagcagcaagaccaac
actgctgaggctcatatcctcaatgcctttcctaatactattcagcttca
tgctgaatgcagtacgagccactttagatgaaga
gaattcaacaccgtaacatgtcgtaccactcactgggcagcctatactct
gctgtattccacacagtcaaagggtacagcaagctccaccaccacttagg
tttggaagtccacaccgtgttcacacaatgaggaaatcttctagaaacat
gttcctcagaacatattcctgttgtaaagagacacagggcttcactggtc
agtcccatcctctttgtaaggccatctgagctaagctgccgagaagggct
ctgcaaagaagggccagttatctgaatcctcacttgacaacagatgacag
agaggcagttaggtaaagaagaagcccaaggaaagaatgaggccaaaacc
ttacactgtgtctagaaaccatgtgttgtaaccaagttggaaacaaaata
acaaaatggcacctaggaagagacctgcagacttgtcctgaggccaatac
acaggagatcagtaacaggatttctaaacctaccactgcctctttttgtt
cttttggttttgccagggtctctcgaggcagcccaggcccagccccctgg
gtgctgagatcacaggtgtgtaccaccacacctgctgaagatgcttctat
ttcacatttcacatgatggaggaaaataccagccgtcccaattgaagact
aggattattattggttaatgctgttgtagagaaaggctaacagattgcag
gagctcgctttcctcaaagcctctcccaggtacagctgctgttggacaaa
atttagctaaaaggttactttcctaaaatataattaaacatgtgttaagc
accttttctctagtgataaaatacctgattatgtctctgagatgtcagag
aaacaaaaataattatcactccctgtttatgctatagaccaaaatacagg
tgttttccaacacatgggatcttaagtgctgtaactgacagtgctgtagc
ccctaaaccacaagctgagaggtatgaaaaagcagaatttatagtgcatg
tatttattccaaacagcattcttgatgactgccaggtgcagtttctgggg
aagcagcagctgaaggggagtactggaggacccctccttgcagctgcaca
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59718406_59719621
seq2: B6Ng01-016H23.b_42_1225

seq1  GAATTCACCTTCGTTGGTTCTTAATATATTGAATGACAATATATTAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTCGTTGGTTCTTAATATATTGAATGACAATATATTAGCTG  50

seq1  AGCGTTAAAGTAAACTTACAGAACTCACTTTGATGACTAAATTTCATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTAAAGTAAACTTACAGAACTCACTTTGATGACTAAATTTCATTCA  100

seq1  AGAAGAAAAAGATGACTATATAAAAATAATAACAGCTGTTGTTTCTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAAGATGACTATATAAAAATAATAACAGCTGTTGTTTCTGTGA  150

seq1  ATCTGACTGAGATTTGATTCAAAGCACACAGTTATGTCTTTTTTGAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTGAGATTTGATTCAAAGCACACAGTTATGTCTTTTTTGAAGAC  200

seq1  AATGTCTGGAATCTTTATTTTCCAGATCATTGTAGTCTTGAGTATGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGGAATCTTTATTTTCCAGATCATTGTAGTCTTGAGTATGTAGT  250

seq1  GTTCGCTCTTACAGGAAGGAATCATGTCATTGTCAAAGGCCTTATTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGCTCTTACAGGAAGGAATCATGTCATTGTCAAAGGCCTTATTTTCT  300

seq1  CTTTTCTCATATGTATAACTGGGTGGTAAAATGCTGATTTACATAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCATATGTATAACTGGGTGGTAAAATGCTGATTTACATAGGAAA  350

seq1  ACGGTTTTTATTTTGCAGTGAGGTTTTCTAGAATGTGCTCTATTGTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTTTTATTTTGCAGTGAGGTTTTCTAGAATGTGCTCTATTGTCATC  400

seq1  ATTGACCCACTTAGAGAAATTAGCATCTTCCTCTGTCCATTAGGTTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCCACTTAGAGAAATTAGCATCTTCCTCTGTCCATTAGGTTATTG  450

seq1  CTTCTTGGGTGGAATTTAATGAATATTAATAACTCAATTCAGAAGGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGGTGGAATTTAATGAATATTAATAACTCAATTCAGAAGGAGGT  500

seq1  AATTTATTAGAGTTTTACACATTTCCATTTTTATGTTATTTGTTTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTAGAGTTTTACACATTTCCATTTTTATGTTATTTGTTTTCCTT  550

seq1  GTGCTTTATGTACCATACGTCTTTTACTTCAGGTTGATTAATAGTTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTATGTACCATACGTCTTTTACTTCAGGTTGATTAATAGTTGCTT  600

seq1  TTTGTTTTTTGCATTATTATGCATTTTCTATATAAGATGTCTTCATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTGCATTATTATGCATTTTCTATATAAGATGTCTTCATATTT  650

seq1  TTATTTGTACTGACTAAAATATGCAGTCATAAAGTGAAGTGTAAAGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTACTGACTAAAATATGCAGTCATAAAGTGAAGTGTAAAGGGAA  700

seq1  GAGAAGAACTGGTTCCTAATCAGAAGTTTCTGGTGACTTGTGTAGCGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAACTGGTTCCTAATCAGAAGTTTCTGGTGACTTGTGTAGCGGAT  750

seq1  ATCACGATTCATATCATGCCCATCAAATGATGCCTTATGTTATGTTTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGATTCATATCATGCCCATCAAATGATGCCTTATGTTATGTTTGGT  800

seq1  CTCAGTTGTTGAAGCCAGAGAAATTGGACAAGCTCATGACAGGTACTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGTTGAAGCCAGAGAAATTGGACAAGCTCATGACAGGTACTGTC  850

seq1  ACATTCTTCAATTCTGTTGTATTAATGAACAGGGCTGACTCTTGGATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTCAATTCTGTTGTATTAATGAACAGGGCTGACTCTTGGATGTT  900

seq1  TTGAGATGGGTTGCCCCATGTAGCCCTAGCTATACTGGAACTTACTATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGGGTTGCCCCATGTAGCCCTAGCTATACTGGAACTTACTATGT  950

seq1  AGACCAGGCCAGCATTGAACTTACGGAAGTCCTCCTGCCTTTGCCTCCCA  1000
      |||||||||||||| ||||||||| |||||||||||||| ||||||||||
seq2  AGACCAGGCCAGCA-TGAACTTAC-GAAGTCCTCCTGCC-TTGCCTCCCA  997

seq1  AATGTCATGCACCTGACAGACAATGCTTACCCAACCCCCTTTCAGGATGT  1050
      ||||||||||||||||||||||||||||||||||||||  |||| |||||
seq2  AATGTCATGCACCTGACAGACAATGCTTACCCAACCCC--TTCA-GATGT  1044

seq1  GGTTCGTTGCTGGTTAGCTCATTGACCAGGGAGTGTAAGATACCAGCAGC  1100
      |||||| |||||||||||||| ||| |||||||||| ||| |||||||||
seq2  GGTTCG-TGCTGGTTAGCTCAATGA-CAGGGAGTGT-AGAAACCAGCAGC  1091

seq1  AAGGACCAACACTGCTGAGGTGCTCATTATCTCTAATGCCTTTTCAAAAT  1150
      || ||||||||||||||||  ||||| ||||   ||||||||| | ||  
seq2  AA-GACCAACACTGCTGAG--GCTCA-TATCCTCAATGCCTTTCCTAA--  1135

seq1  TACCTAATTCAGCTCTTACAATGCTGTGATAATGGAATGATACAAACCCC  1200
      |||   ||||||||      ||||||    |||| |    ||| |   ||
seq2  TAC--TATTCAGCT----TCATGCTG----AATGCA---GTACGA--GCC  1170

seq1  ACTTTATAGATGAAGA  1216
      ||||  ||||||||||
seq2  ACTT--TAGATGAAGA  1184

seq1: chr4_59855783_59856887
seq2: B6Ng01-016H23.g_68_1170 (reverse)

seq1  CCATGCTGCAGCCTGC-AGGA-GAGTCCTTCAGTAACTCCCC-TCAGCCT  47
      ||||| ||||| |||| |||| | ||||| |||| ||||||| |||| ||
seq2  CCATG-TGCAG-CTGCAAGGAGGGGTCCTCCAGT-ACTCCCCTTCAG-CT  46

seq1  GCTTGCTTCCCCAG-AACTGCACCTGGCAGTCATCAAGAATGCTGTTTGG  96
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GC-TGCTTCCCCAGAAACTGCACCTGGCAGTCATCAAGAATGCTGTTTGG  95

seq1  ATTAAATACATGCACTAATAAATTCTGCTTTTTCATATCCTCTCAGC-TG  145
      | |||||||||||||| |||||||||||||||||||| ||||||||| ||
seq2  AATAAATACATGCACT-ATAAATTCTGCTTTTTCATA-CCTCTCAGCTTG  143

seq1  TGGTTTAGGGGCTACAGCACCTGTCAGTTACAGCACTTAAGATCCCATGT  195
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGTTTAGGGGCTACAGCA-CTGTCAGTTACAGCACTTAAGATCCCATGT  192

seq1  GTTGGAAAACACCTGTATTTTGGTCTATAGCATAAACAGGGAGTGATAAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAAACACCTGTATTTTGGTCTATAGCATAAACAGGGAGTGATAAT  242

seq1  TA-TTTTGTTTCTCTGACATCTCAGAGACATAATCAGGTATTTTATCACT  294
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTTTCTCTGACATCTCAGAGACATAATCAGGTATTTTATCACT  292

seq1  AGAGGAAAGGTGCTTAACACATGTTTAATTATATTTTAGGAAAGTAACCT  344
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAGGTGCTTAACACATGTTTAATTATATTTTAGGAAAGTAACCT  342

seq1  TTTAGCTAAATTTTGTCCAACAGCAGCTGTACCTGGGAGAGGCTTTGAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTAAATTTTGTCCAACAGCAGCTGTACCTGGGAGAGGCTTTGAGG  392

seq1  AAAGCGAGCTCCTGCAATCTGTTAGCCTTTCTCTACAACAGCATTAACCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGAGCTCCTGCAATCTGTTAGCCTTTCTCTACAACAGCATTAACCA  442

seq1  ATAATAATCCTAGTCTTCAATTGGGACGGCTGGTATTTTCCTCCATCATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATCCTAGTCTTCAATTGGGACGGCTGGTATTTTCCTCCATCATG  492

seq1  TGAAATGTGAAATAGAAGCATCTTCAGCAGGTGTGGTGGTACACACCTGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTGAAATAGAAGCATCTTCAGCAGGTGTGGTGGTACACACCTGT  542

seq1  GATCTCAGCACCCAGGGGGCTGGGCCTGGGCTGCCTCGAGAGACCCTGGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGCACCCAGGGGGCTGGGCCTGGGCTGCCTCGAGAGACCCTGGC  592

seq1  AAAACCAAAAGAACAAAAAGAGGCAGTGGTAGGTTTAGAAATCCTGTTAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAGAACAAAAAGAGGCAGTGGTAGGTTTAGAAATCCTGTTAC  642

seq1  TGATCTCCTGTGTATTGGCCTCAGGACAAGTCTGCAGGTCTCTTCCTAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCCTGTGTATTGGCCTCAGGACAAGTCTGCAGGTCTCTTCCTAGG  692

seq1  TGCCATTTTGTTATTTTGTTTCCAACTTGGTTACAACACATGGTTTCTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTTGTTATTTTGTTTCCAACTTGGTTACAACACATGGTTTCTAG  742

seq1  ACACAGTGTAAGGTTTTGGCCTCATTCTTTCCTTGGGCTTCTTCTTTACC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGTAAGGTTTTGGCCTCATTCTTTCCTTGGGCTTCTTCTTTACC  792

seq1  TAACTGCCTCTCTGTCATCTGTTGTCAAGTGAGGATTCAGATAACTGGCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCCTCTCTGTCATCTGTTGTCAAGTGAGGATTCAGATAACTGGCC  842

seq1  CTTCTTTGCAGAGCCCTTCTCGGCAGCTTAGCTCAGATGGCCTTACAAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGCAGAGCCCTTCTCGGCAGCTTAGCTCAGATGGCCTTACAAAG  892

seq1  AGGATGGGACTGACCAGTGAAGCCCTGTGTCTCTTTACAACAGGAATATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGACTGACCAGTGAAGCCCTGTGTCTCTTTACAACAGGAATATG  942

seq1  TTCTGAGGAACATGTTTCTAGAAGATTTCCTCATTGTGTGAACACGGTGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGGAACATGTTTCTAGAAGATTTCCTCATTGTGTGAACACGGTGT  992

seq1  GGACTTCCAAACCTAAGTGGTGGTGGAGCTTGCTGTACCCTTTGACTGTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCCAAACCTAAGTGGTGGTGGAGCTTGCTGTACCCTTTGACTGTG  1042

seq1  TGGAATACAGCAGAGTATAGGCTGCCCAGTGAGTGGTACGACATGTTACG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATACAGCAGAGTATAGGCTGCCCAGTGAGTGGTACGACATGTTACG  1092

seq1  GTGTTGAATTC  1105
      |||||||||||
seq2  GTGTTGAATTC  1103