BAC Information

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BAC

Clone NameB6Ng01-016I08
Chromosome6 (Build37)4 (Build37)
Map Location 43,047,106 - 43,048,31579,221,296 - 79,221,811
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1
Downstream geneGA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016I08.bB6Ng01-016I08.g
ACCDH850460DH850461
length1,1931,069
definitionDH850460|Mus musculus domesticus DNA, BAC clone: B6Ng01-016I08, 5' end.DH850461|Mus musculus domesticus DNA, BAC clone: B6Ng01-016I08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,047,106 - 43,048,315)(79,221,296 - 79,221,811)
sequence
gaattctccatgatccagaaatatcatacccatgtcataaagtgatagtt
tatgtttttaaaaaagaacagtttgatacttctcatattattttgaaact
acatatgtctataaatacagcagaaaaagaacatttgctctagttgaata
ttttctaattcacagcccattttaaattctgagtaagatttaaaagagat
agtcttgattaaagctttcttttattaaatcagacacagcaaccattaca
gttcaaaacattgtgtttcactttttgtttttattttttagacaggctct
cacgttgtagccaaggctgccttcaaattgcagttatcttcctttgcttg
gcctccagattacaagtgtgagtccccacacccatctgtctctgtgactt
ttctattttcagagattttaaacctctcttgagctcaggtgcctgtgaaa
gctaaaagcaggctatgatcaccttgagctggaattacaggcaaccatga
gctgcttgagttgggtgttgagaagttaactctggtcttccaaaagagca
atgtgtgtttttaagcaccaagcacttttaagagtagagtcatctccaca
gctccattgtgccctgtcatgagattgttgattcagcccctatgactgag
ggacaggaaagtgtttcttttcaagatttaacaagacttcttcagactaa
caggcagacggaccatctgtctacactctggtcatctactttcttactga
tcctgtactgattttctataggggtaaggtagtcatcaaagaaatgtttc
tctctgagcctggagaaagggattttaagccatggtagagccatgccaaa
tatttcctttcattttctctgatggtaagtgatttagggtgacagactgt
cattccattttgctttaggtaatggaattcaagagagctatgttgagagg
gaggcttctgggaaacactcctttctgacggagggaaagagagagagtag
gttaggataaagaactcacttgttcattgtcatttttatatatcaaataa
aacaaaatcatttcactgcatagtctcatttttattagttttgagaaatt
ctacaatgccacttgatcaaatttcccacttttttctgttcccgaaatca
tttccctcccctccacccattatgtgcactcttattttgaccc
gaattctttgttcagttctgagacccattttttaatggggttatttaatt
ttctggagtccacgttcttgagttctttttatatattggatattagtccc
ctatctgatttagggtaggtaaagatccttttccagtctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcgatcttacagaacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcaattcgc
attcttctacgtgatatcaaccagttgtgccagcaccatttgttgaaaat
gctgtcttcaactggatggttttagctcccttgtcgaagatcaagtgacc
ataggtgtgtgggttcatttctgggtctacaattctattccattggtcta
cttctctgtcactttaccaataccacgcagtttttattacaattgctctg
tggtaaagctttaggtcaggcatggtaattccaccagaggttcttttatc
gttaagaggagtttttgctatcctaggttttttgttattccagatgaatt
tgcagattgctctttctaattcgttgaagaattgagttggaattttgatg
gggattgcattgaatctgtagattgtttttggcaagatagccatttttac
aatgttgatcctgccaatccatgagcatgagagatctttccatcttctga
gatcttcttaatttcttttcttcagagatttgaagttttttattatacag
atcttcacttccttagttagagtcacgccaaattattttatattattgtg
actattgagaaggtgtgtttccctaattcttctcagcctgtttattcttg
gtgtagaataaaggcattgacttgttagttaattttatatccgctacctt
cacaagctgtttatcaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_43047106_43048315
seq2: B6Ng01-016I08.b_28_1220 (reverse)

seq1  GGGTCAAAATAAGAGTGCACATAAATTTGGGTGGGGAGGGGAGGGGAAAT  50
      ||||||||||||||||||||||||   |||||  |||||||| |||||||
seq2  GGGTCAAAATAAGAGTGCACATAA---TGGGT--GGAGGGGA-GGGAAAT  44

seq1  GAATCTGGGGGAACAGGAAAAAGTGGGAAATTTGATCAAAGTGCATTGTA  100
      ||   |  |||||||| ||||||||||||||||||||||   ||||||| 
seq2  GA--TTTCGGGAACAGAAAAAAGTGGGAAATTTGATCAAGTGGCATTGT-  91

seq1  AGAATTTCTCAAAAACTAATAAAAATGAGACTATTGCAGTGAAATGAATT  150
      |||||||||| |||||||||||||||||||||| ||||||||||||| ||
seq2  AGAATTTCTC-AAAACTAATAAAAATGAGACTA-TGCAGTGAAATGATTT  139

seq1  TTGTATATATGATATATAAAAAATGACAATGAACAAAGGTGAGTTCTTTA  200
      |  | ||| |||||||| ||||||||||||||||||  ||||||||||||
seq2  TGTTTTATTTGATATAT-AAAAATGACAATGAACAA--GTGAGTTCTTTA  186

seq1  TCCTAACCTAACTCTCTCCTCTTTCCCTCGTTCAGAAAGGAGTGTTTCCC  250
      ||||||||| ||||||| |||||||||||  |||||||||||||||||||
seq2  TCCTAACCT-ACTCTCT-CTCTTTCCCTCCGTCAGAAAGGAGTGTTTCCC  234

seq1  AGAAGCCTCCCTCTCAACATAGCTCTTCTTGAATTCCATTACCTAAAGCA  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAAGCCTCCCTCTCAACATAGCTC-TCTTGAATTCCATTACCTAAAGCA  283

seq1  AAATGGAATGACAGTCTGTCACCCTAAATCACTTACCATCAGAGAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAATGACAGTCTGTCACCCTAAATCACTTACCATCAGAGAAAATG  333

seq1  AAAGGAAATATTTGGCATGGCTCTACCATGGCTTAAAATCCCTTTCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATATTTGGCATGGCTCTACCATGGCTTAAAATCCCTTTCTCCA  383

seq1  GGCTCAGAGAGAAACATTTCTTTGATGACTACCTTACCCCTATAGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGAGAAACATTTCTTTGATGACTACCTTACCCCTATAGAAAAT  433

seq1  CAGTACAGGATCAGTAAGAAAGTAGATGACCAGAGTGTAGACAGATGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGGATCAGTAAGAAAGTAGATGACCAGAGTGTAGACAGATGGTC  483

seq1  CGTCTGCCTGTTAGTCTGAAGAAGTCTTGTTAAATCTTGAAAAGAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGCCTGTTAGTCTGAAGAAGTCTTGTTAAATCTTGAAAAGAAACAC  533

seq1  TTTCCTGTCCCTCAGTCATAGGGGCTGAATCAACAATCTCATGACAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTCCCTCAGTCATAGGGGCTGAATCAACAATCTCATGACAGGGC  583

seq1  ACAATGGAGCTGTGGAGATGACTCTACTCTTAAAAGTGCTTGGTGCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAGCTGTGGAGATGACTCTACTCTTAAAAGTGCTTGGTGCTTAA  633

seq1  AAACACACATTGCTCTTTTGGAAGACCAGAGTTAACTTCTCAACACCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACATTGCTCTTTTGGAAGACCAGAGTTAACTTCTCAACACCCAA  683

seq1  CTCAAGCAGCTCATGGTTGCCTGTAATTCCAGCTCAAGGTGATCATAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCAGCTCATGGTTGCCTGTAATTCCAGCTCAAGGTGATCATAGCC  733

seq1  TGCTTTTAGCTTTCACAGGCACCTGAGCTCAAGAGAGGTTTAAAATCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAGCTTTCACAGGCACCTGAGCTCAAGAGAGGTTTAAAATCTCT  783

seq1  GAAAATAGAAAAGTCACAGAGACAGATGGGTGTGGGGACTCACACTTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGAAAAGTCACAGAGACAGATGGGTGTGGGGACTCACACTTGTA  833

seq1  ATCTGGAGGCCAAGCAAAGGAAGATAACTGCAATTTGAAGGCAGCCTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGGCCAAGCAAAGGAAGATAACTGCAATTTGAAGGCAGCCTTGG  883

seq1  CTACAACGTGAGAGCCTGTCTAAAAAATAAAAACAAAAAGTGAAACACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACGTGAGAGCCTGTCTAAAAAATAAAAACAAAAAGTGAAACACAA  933

seq1  TGTTTTGAACTGTAATGGTTGCTGTGTCTGATTTAATAAAAGAAAGCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAACTGTAATGGTTGCTGTGTCTGATTTAATAAAAGAAAGCTTT  983

seq1  AATCAAGACTATCTCTTTTAAATCTTACTCAGAATTTAAAATGGGCTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGACTATCTCTTTTAAATCTTACTCAGAATTTAAAATGGGCTGTG  1033

seq1  AATTAGAAAATATTCAACTAGAGCAAATGTTCTTTTTCTGCTGTATTTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAAATATTCAACTAGAGCAAATGTTCTTTTTCTGCTGTATTTAT  1083

seq1  AGACATATGTAGTTTCAAAATAATATGAGAAGTATCAAACTGTTCTTTTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATGTAGTTTCAAAATAATATGAGAAGTATCAAACTGTTCTTTTT  1133

seq1  TAAAAACATAAACTATCACTTTATGACATGGGTATGATATTTCTGGATCA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATAAACTATCACTTTATGACATGGGTATGATATTTCTGGATCA  1183

seq1  TGGAGAATTC  1210
      ||||||||||
seq2  TGGAGAATTC  1193

seq1: chr4_79221296_79221811
seq2: B6Ng01-016I08.g_629_1135 (reverse)

seq1  ACCTGATAAACAGCTTCGGTGAA-GTAGCTGGATATAAAATTAACTCAAA  49
      ||||||||||||||||  ||||| ||||| ||||||||||||||||  ||
seq2  ACCTGATAAACAGCTT--GTGAAGGTAGC-GGATATAAAATTAACT--AA  45

seq1  CAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAA  99
      |||||||||| | ||  ||||||| ||||||||||||||||||||   ||
seq2  CAAGTCAATGCCTTTATTCTACACCAAGAATAAACAGGCTGAGAA--GAA  93

seq1  TTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTC  149
      |||||||||| ||| |||||||||||||||| ||||||||||||||  | 
seq2  TTAGGGAAAC-ACA-CCTTCTCAATAGTCAC-AATAATATAAAATAATTT  140

seq1  GGTGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGAT-AAAAACTTCA  198
      || ||||||||||||||||||||| ||||||||||| || ||||||||||
seq2  GGCGTGACTCTAACTAAGGAAGTG-AAGATCTGTATAATAAAAAACTTCA  189

seq1  AGTCTCTGAAG-AAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCT  247
      | ||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  AATCTCTGAAGAAAAGAAATT-AAGAAGATCTCAGAAGATGGAAAGATCT  238

seq1  CCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGC  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGC  288

seq1  CAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAA  347
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAA  338

seq1  TTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAA  397
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  TTCTTCAACGAATTAGAAAGAGCAATCTGCAAATTCATCTGGAATAACAA  388

seq1  AAAAACTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTG  447
      |||| |||||||||||||||||| ||| || |||||||||||||||||||
seq2  AAAACCTAGGATAGCAAAAACTCCTCTTAACGATAAAAGAACCTCTGGTG  438

seq1  GAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGGTAAAA  497
      |||| |||||||||||||||||||||||| |||||||||||||  |||||
seq2  GAATTACCATGCCTGACCTAAAGCTTTACCACAGAGCAATTGTAATAAAA  488

seq1  ACTGCATGGTACTGGTATA  516
      ||||| ||||| ||||| |
seq2  ACTGCGTGGTATTGGTAAA  507