BAC Information

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BAC

Clone NameB6Ng01-016K14
Chromosome13 (Build37)4 (Build37)
Map Location 116,965,084 - 116,966,21561,696,400 - 61,696,916
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041023, LOC547402, LOC100041045, EG623174
Downstream geneIsl1, EG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016K14.bB6Ng01-016K14.g
ACCDH850564DH850565
length1,1101,042
definitionDH850564|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K14, 5' end.DH850565|Mus musculus domesticus DNA, BAC clone: B6Ng01-016K14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,965,084 - 116,966,215)(61,696,400 - 61,696,916)
sequence
gaattctctctcacttcctaactgaatgtgtaaatgattcattattaagt
tgtatggatttttgtttagaaaagtggactgaattgttacctcatatatt
tttacaataggttatgcaatgaatttcattttttggtttggtttcgggtt
ttctgagacagggtttctctctgtagccctgtctgtcccagaactcactc
tgtagaccaggctggcctcctgagtactgggattaaaggtatgcaccacc
acatcccagctaaaatgaggatctcttgaggaagtaaagttaaattgtac
tcaaaagatttaaaacctaaattaagagtttctaaactttttatccataa
agaaaaacaacttttcagtgcataataataatatttacagtactctagat
attttgaaaaaataacagtaaaagtctatagatatttgataatgtttatt
taaaccacacttgctagcctttcaaactcacctatgcattttaataattt
cacctaacattttcaagggactcagatttggatatactgtataagtgaag
tttattccccaagaagactctttcccacagtctagaaaccaatttgagtc
agtactgattcaaagatagattcctttttactgttcctgtaactatttgg
accaaccagcaattaaagggttattgagagggagaagttgagcttcagat
gagcatttcccagtggcacatatctttagcagtaagcgtggaagccaact
aggaaagaacacgtttgaagtggcagaactaatcatgcagaagcaatttg
cgattttctccctcagcccagataaagcagagcattatgacattggctgt
gaggaacaaggtcaatttactgtgaaagccagctatagactacaacttca
aatagactttatcctgtatagccagaaacaggatttaccctattgcttac
actacagaatgggcaaatgaagtggacaatcaattagatgcaccagtatg
tctgattttccccaactctttctgatatcactgtactagagctgacattc
tctcatctatgagacaacctattgacgctcatgctcaatttttcggcatg
gatctatttt
gaattctttgtttagctttgaggcccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttcttcatatatatattgaatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtgcct
tttttgtcttattgacggtgtcttttgccttgcagaagctttgcaatttt
ataaggtcccatttgtcgattctggatcttaaagaacaagccattgctgt
tctattcaggaaattttcccctgtacccatatcttcaaggcttttctcta
ctttctcctctataagtttcagtgtctctggttttatgtagagttccttt
atccacttagatttgaccttagtacaaggagataggtatggatcgattcg
cattcttctacatgataaccgccagttgtgccatcaccatttgttgaaaa
tgctgtcttttttccactggatggtttttgctcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gtctacttgtctgtcactataccagtaccatgcagtttttatcacagttg
ctctgtagtatagctttaggtcaggcatggtgattccaccagagattttt
tttatccttgagcagagtttttgctatcctaggttttttggtattccaga
tgaatatgcaaattgctctttctaattcattgaagaattgagttggaatt
ttgatggggattgcattgaatctgtagattgctttttgcaagatagccat
tattactatactgatcctgccaatccatgaatatgggagatctttccctc
ttctgcattcttctccaagttttttttatgagagacttgaagttcttgtc
atacagatctttcacttgctggtagagttaccccaaaaatattctatatt
tatttgtgactattgtaaatggtgttatttccaacttttctttctcagcc
tgttaatccttgctaaaggaatgttactggatttgtttgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116965084_116966215
seq2: B6Ng01-016K14.b_44_1153 (reverse)

seq1  AAAATAGATTTCATTGCAGAAAAAAATGAGCAATGAGGCGTCAATAGTTT  50
      ||||||||  ||  ||| | ||||| ||||| |||| |||||||||| ||
seq2  AAAATAGA--TCCATGCCG-AAAAATTGAGC-ATGA-GCGTCAATAGGTT  45

seq1  GTTCTCATAGATGAGAGAATTGTCAGCTCTAGTTACAAGGTGATTATCAG  100
      | ||||||||||||||||| |||||||||||| ||||  |||| ||||||
seq2  G-TCTCATAGATGAGAGAA-TGTCAGCTCTAG-TACA--GTGA-TATCAG  89

seq1  AAAGAGTTGGGGGAAAAATTCAAGACAATTACTGGTGCATCCTAATTGAA  150
      ||||||||||||  |||||   |||||  ||||||||||| ||||||| |
seq2  AAAGAGTTGGGG--AAAAT--CAGACA--TACTGGTGCAT-CTAATTG-A  131

seq1  TTGTCCACTTCATTTTGCCCATTCTGTAGTGTAAGCAATAGGGTAAATCC  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGTCCACTTCA-TTTGCCCATTCTGTAGTGTAAGCAATAGGGTAAATCC  180

seq1  TGTTTCTGGCTATACAGGATAAAAGTCTATTTGAAGTTGTAGTCTATAGC  250
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTTTCTGGCTATACAGGAT-AAAGTCTATTTGAAGTTGTAGTCTATAGC  229

seq1  TGGCTTTTCACAGTAAATTGACCTTGTTCCTCACAGCCAATGTCATAATG  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGC-TTTCACAGTAAATTGACCTTGTTCCTCACAGCCAATGTCATAATG  278

seq1  CTCTGCTTTATCTGGGCTGAGGGAGAAAATCGCAAATTGCTTCTGCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTTATCTGGGCTGAGGGAGAAAATCGCAAATTGCTTCTGCATGA  328

seq1  TTAGTTCTGCCACTTCAAACGTGTTCTTTCCTAGTTGGCTTCCACGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTGCCACTTCAAACGTGTTCTTTCCTAGTTGGCTTCCACGCTTA  378

seq1  CTGCTAAAGATATGTGCCACTGGGAAATGCTCATCTGAAGCTCAACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAAGATATGTGCCACTGGGAAATGCTCATCTGAAGCTCAACTTCT  428

seq1  CCCTCTCAATAACCCTTTAATTGCTGGTTGGTCCAAATAGTTACAGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCAATAACCCTTTAATTGCTGGTTGGTCCAAATAGTTACAGGAAC  478

seq1  AGTAAAAAGGAATCTATCTTTGAATCAGTACTGACTCAAATTGGTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGGAATCTATCTTTGAATCAGTACTGACTCAAATTGGTTTCTA  528

seq1  GACTGTGGGAAAGAGTCTTCTTGGGGAATAAACTTCACTTATACAGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGGAAAGAGTCTTCTTGGGGAATAAACTTCACTTATACAGTATA  578

seq1  TCCAAATCTGAGTCCCTTGAAAATGTTAGGTGAAATTATTAAAATGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATCTGAGTCCCTTGAAAATGTTAGGTGAAATTATTAAAATGCATA  628

seq1  GGTGAGTTTGAAAGGCTAGCAAGTGTGGTTTAAATAAACATTATCAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTTGAAAGGCTAGCAAGTGTGGTTTAAATAAACATTATCAAATA  678

seq1  TCTATAGACTTTTACTGTTATTTTTTCAAAATATCTAGAGTACTGTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGACTTTTACTGTTATTTTTTCAAAATATCTAGAGTACTGTAAAT  728

seq1  ATTATTATTATGCACTGAAAAGTTGTTTTTCTTTATGGATAAAAAGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATGCACTGAAAAGTTGTTTTTCTTTATGGATAAAAAGTTTA  778

seq1  GAAACTCTTAATTTAGGTTTTAAATCTTTTGAGTACAATTTAACTTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTTAATTTAGGTTTTAAATCTTTTGAGTACAATTTAACTTTACT  828

seq1  TCCTCAAGAGATCCTCATTTTAGCTGGGATGTGGTGGTGCATACCTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAGAGATCCTCATTTTAGCTGGGATGTGGTGGTGCATACCTTTAA  878

seq1  TCCCAGTACTCAGGAGGCCAGCCTGGTCTACAGAGTGAGTTCTGGGACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTACTCAGGAGGCCAGCCTGGTCTACAGAGTGAGTTCTGGGACAG  928

seq1  ACAGGGCTACAGAGAGAAACCCTGTCTCAGAAAACCCGAAACCAAACCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTACAGAGAGAAACCCTGTCTCAGAAAACCCGAAACCAAACCAA  978

seq1  AAAATGAAATTCATTGCATAACCTATTGTAAAAATATATGAGGTAACAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAATTCATTGCATAACCTATTGTAAAAATATATGAGGTAACAAT  1028

seq1  TCAGTCCACTTTTCTAAACAAAAATCCATACAACTTAATAATGAATCATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCACTTTTCTAAACAAAAATCCATACAACTTAATAATGAATCATT  1078

seq1  TACACATTCAGTTAGGAAGTGAGAGAGAATTC  1132
      ||||||||||||||||||||||||||||||||
seq2  TACACATTCAGTTAGGAAGTGAGAGAGAATTC  1110

seq1: chr4_61696400_61696916
seq2: B6Ng01-016K14.g_700_1114 (reverse)

seq1  AATCAAACAAATCCAGTGTTCAAATACACTATAAATCTAGTATCAGACAT  50
      ||||||||||||||||   | | || | || |  | | || || | ||| 
seq2  AATCAAACAAATCCAG---TAACATTC-CTTT--AGCAAGGATTA-ACA-  42

seq1  TTGTTTATAAATACAAAAAAACTAAACTCTGTAGTGCAGAGAAGTTTCAA  100
        | | | ||| |          ||| | || |    | |  | || |||
seq2  -GGCTGAGAAAGA----------AAAGT-TGGAAATAACACCATTTACAA  80

seq1  TGTGTCTGACATTTCATGCTACTTGGTTGTGGTGCTCAGATTAGTTTCAA  150
      |  |||  |||  | |   |                 ||| || |||   
seq2  T-AGTC--ACAAATAAATAT-----------------AGAATATTTT---  107

seq1  GCAGCTTAATCCATCCCCTAGGCAGTAAAATTTTAATTAGATATATAAAG  200
         |  |||    ||  | ||  ||| ||         |||| | | | |
seq2  -TGGGGTAA---CTCTACCAGCAAGTGAA---------AGATCTGT-ATG  143

seq1  ACATGAAGGGTGCCTGTCAAATACTACTGACAAGGTAAGGACTGAAACTC  250
      ||| |||      || |||| |    ||  ||   |||  |   ||||| 
seq2  ACAAGAA------CT-TCAAGT----CTCTCA---TAAAAA---AAACT-  175

seq1  TGGAG-ATAAT----AGGACAGATACAGCAACCACA-CCATGGCTGTTGT  294
      ||||| | |||    | ||  || | | |  ||| |  |||||   ||| 
seq2  TGGAGAAGAATGCAGAAGAGGGAAAGATCTCCCATATTCATGG--ATTGG  223

seq1  AACTACACATGCATTACTCTGTTAAGCTCAT--CTATGTCTGAATAAGGA  342
       |        | || | | |  |||  | ||  |||| |   || ||| |
seq2  CA--------GGATCAGTATAGTAA--TAATGGCTATCTTGCAAAAAGCA  263

seq1  AGAACTTCACCACATTAGACACCTGAACTATGATGAAGCTTAAGAAATTG  392
      |     ||  || |||           | |||   || |   |  ||   
seq2  A-----TCTACAGATT-----------CAATG--CAATCCCCATCAA---  292

seq1  GTTAATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATCGGCAGAT  442
         ||||||||||||||||||||| ||||||||||| |||||  ||| ||
seq2  ---AATTCCAACTCAATTCTTCAATGAATTAGAAAGAGCAATTTGCATAT  339

seq1  TCATCTGGAATAACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGAT  492
      |||||||||||| ||||||||| ||||||||||||||||| |||||||||
seq2  TCATCTGGAATACCAAAAAACCTAGGATAGCAAAAACTCTGCTCAAGGAT  389

seq1  -AAAAGAACCTCTGGTGGAATCACCA  517
       |||| || |||||||||||||||||
seq2  AAAAAAAATCTCTGGTGGAATCACCA  415