BAC Information

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BAC

Clone NameB6Ng01-016L03
Chromosome4 (Build37)
Map Location 93,975,130 - 94,086,345
singlet/doubletdoublet
Overlap genenone
Upstream geneTusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016L03.bB6Ng01-016L03.g
ACCDH850587DH850588
length1,0941,143
definitionDH850587|Mus musculus domesticus DNA, BAC clone: B6Ng01-016L03, 5' end.DH850588|Mus musculus domesticus DNA, BAC clone: B6Ng01-016L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,975,130 - 93,976,235)(94,085,188 - 94,086,345)
sequence
gaattcagtatcgcacacatatacacactgtcacaaagacatgaaggtag
aggggaactagttgaggaggtattctgagatagggatgaaagtgactggg
agaaaaataggatccaaatacgctatatatgtatatgatattgggaaaag
gtaaatagcagaggtaaagaataaggcttctccatgtgttatgtgcattt
acaagtgagaagtatctaaatattgaaaaggtatagaaggaactaagatg
actaatttatacagaagagactatggtacttgtcaacttattttccagcc
gctgtgtacccagtccagatttctagacaaataatgagaaactgcctttc
tcatttaagctgatcagccagatctggggatcatgcccagatttttgtct
ctgacatgggactaaaacctgtcaaatactaccaacctttactaatacca
aataggttctaagagttaattttttcacttagagaaaaccaaaagggtgt
aattcttgcttcaagaattctagaaacaaaaagatctgagggactcctgt
tctctcatgaggaaactgttcattgcagtttcaacagtgccttacagtca
cttgcatgtgaggaagtgagctggttcagacctgatagcttcctccctca
agactatctttcacgataccagggggcaacatataagcttccaacagaag
aaaggagtcagtagtcctacccagctatgatgccattcattaagacattg
accagcacaatgatcttaagggtacaatagtggcatgcacactttcctag
taactgacagatctctaatagaatttactggtgcctcatattagaaactg
agtcaattacccaggtatagtgaagtcatagatcttggaggagaatctat
aacttccactttactaaaccagcctaattcctagctaaactgaatcctta
tacccattggtaaatagaggtctcatccctcatcaaagaaacaacctttt
gaacaactgagacaatatgtaagcacactgatcaaatgcagacagtgact
gtgtggtactccacctcaacgtctacaatctacatctaagctca
gaattcactctgtagactaggctggcctcaaactcagaaatctgcctgcc
tctgcctcccaagtgctgggattaaaggcattcgccaccactgcctggca
taactagatgtttttacttgtcttgtttgtgcctcaaaaccactaaagtc
aacacctaattcatcaagtgtttgaggaaatcactcctggagatttaaaa
ttatgtttcttgtactttgaaggacagtggctgaaatgccagaacctgaa
gagatctaacatcttgttagggacagtgatggagaatatgacacagtgaa
ctgtggaactctatgttggatatgacctcactacaatggtcacacagagc
tgttcaaaagaggaatcagaaggaaagtgtgtccatttgtaagagcttct
gtctggttcacaacctttgcagtaatagagagataaataagtaaattgat
ttaaaaaatcaggccagttcaccaactcttttacatacacacacgtgcac
acatctataaaagctgtgattggatgccaacaagctattaggatcaccca
gcagtagatcacaggaaaaaatgagactagagtgcttttagacagagagg
gcgaacaaagaggaccctgccttctagctttgaacacctgacatcttttc
atgtctttgaagttttgcttttttttttatcataatattaatggagagaa
tagaacagaaaggggaagatagcatgcatttatttatttattttctttct
cagagtgagaaaattgtagctttcaaaaggcaaaagcccaggaatttgga
aagggtggaaaaaaaaccccagattgttgttgggataaaatggagatttc
cttcctggttctactgcatgaatatttatcaagggtctattaagagccga
atcctagatcttcacaaaggaaaagtgaatgggcaaagataatgcagtat
ttataatatatctgacttgatgtggacttgcatagtacgtgtgcatttca
gggatcaggagaatggaggagtagactgggtgacggaaagctgctgggga
tgcactgggggaatgaaggctccagaaaccaataggatgataaaagattc
ttggatgttttatgaaggacttatcaggtaaataacgagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93975130_93976235
seq2: B6Ng01-016L03.b_47_1140

seq1  GAATTCAGTATCGCACACATATACACACTGTCACAAAGACATGAAGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATCGCACACATATACACACTGTCACAAAGACATGAAGGTAG  50

seq1  AGGGGAACTAGTTGAGGAGGTATTCTGAGATAGGGATGAAAGTGACTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAACTAGTTGAGGAGGTATTCTGAGATAGGGATGAAAGTGACTGGG  100

seq1  AGAAAAATAGGATCCAAATACGCTATATATGTATATGATATTGGGAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAGGATCCAAATACGCTATATATGTATATGATATTGGGAAAAG  150

seq1  GTAAATAGCAGAGGTAAAGAATAAGGCTTCTCCATGTGTTATGTGCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAGCAGAGGTAAAGAATAAGGCTTCTCCATGTGTTATGTGCATTT  200

seq1  ACAAGTGAGAAGTATCTAAATATTGAAAAGGTATAGAAGGAACTAAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGAGAAGTATCTAAATATTGAAAAGGTATAGAAGGAACTAAGATG  250

seq1  ACTAATTTATACAGAAGAGACTATGGTACTTGTCAACTTATTTTCCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTATACAGAAGAGACTATGGTACTTGTCAACTTATTTTCCAGCC  300

seq1  GCTGTGTACCCAGTCCAGATTTCTAGACAAATAATGAGAAACTGCCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTACCCAGTCCAGATTTCTAGACAAATAATGAGAAACTGCCTTTC  350

seq1  TCATTTAAGCTGATCAGCCAGATCTGGGGATCATGCCCAGATTTTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAGCTGATCAGCCAGATCTGGGGATCATGCCCAGATTTTTGTCT  400

seq1  CTGACATGGGACTAAAACCTGTCAAATACTACCAACCTTTACTAATACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGGGACTAAAACCTGTCAAATACTACCAACCTTTACTAATACCA  450

seq1  AATAGGTTCTAAGAGTTAATTTTTTCACTTAGAGAAAACCAAAAGGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTCTAAGAGTTAATTTTTTCACTTAGAGAAAACCAAAAGGGTGT  500

seq1  AATTCTTGCTTCAAGAATTCTAGAAACAAAAAGATCTGAGGGACTCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGCTTCAAGAATTCTAGAAACAAAAAGATCTGAGGGACTCCTGT  550

seq1  TCTCTCATGAGGAAACTGTTCATTGCAGTTTCAACAGTGCCTTACAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATGAGGAAACTGTTCATTGCAGTTTCAACAGTGCCTTACAGTCA  600

seq1  CTTGCATGTGAGGAAGTGAGCTGGTTCAGACCTGATAGCTTCCTCCCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGTGAGGAAGTGAGCTGGTTCAGACCTGATAGCTTCCTCCCTCA  650

seq1  AGACTATCTTTCACGATACCAGGGGGCAACATATAAGCTTCCAACAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATCTTTCACGATACCAGGGGGCAACATATAAGCTTCCAACAGAAG  700

seq1  AAAGGAGTCAGTAGTCCTACCCAGCTATGATGCCATTCATTAAGACATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTCAGTAGTCCTACCCAGCTATGATGCCATTCATTAAGACATTG  750

seq1  ACCAGCACAATGATCTTAAGGGTACAATAGTGGCATGCACACTTTCCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCACAATGATCTTAAGGGTACAATAGTGGCATGCACACTTTCCTAG  800

seq1  TAACTGACAGATCTCTAATAGAATTTACTGGTGCCTCATATTAGAAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGACAGATCTCTAATAGAATTTACTGGTGCCTCATATTAGAAACTG  850

seq1  AGTCAATTACCCAGGTATAGTGAAGTCATAGATCTTGGAGGAGAATCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATTACCCAGGTATAGTGAAGTCATAGATCTTGGAGGAGAATCTAT  900

seq1  AACTTCCACTTTACTAAACCAGCCTAATTCCTAGCTAAACTGAATCCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCACTTTACTAAACCAGCCTAATTCCTAGCTAAACTGAATCCTTA  950

seq1  TACCCATTGGTAAATAGAGGTCTCATCCCTCATCAAAGAAACAACCTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATTGGTAAATAGAGGTCTCATCCCTCATCAAAGAAACAACCTTTT  1000

seq1  GAAACAAACTGAGACCAATATGTAAAGCCACAACTGATCAAAATGCAGAC  1050
      |||   |||||||| ||||||||||   ||| ||||||| ||||||||||
seq2  GAA--CAACTGAGA-CAATATGTAA--GCAC-ACTGATC-AAATGCAGAC  1043

seq1  AAGTGACTGTGTGGTACTCCACCTCAACGTCTACAAATTCCTACATCTAA  1100
       |||||||||||||||||||||||||||||||||||    |||||||| |
seq2  -AGTGACTGTGTGGTACTCCACCTCAACGTCTACAA---TCTACATCT-A  1088

seq1  AGCTCA  1106
      ||||||
seq2  AGCTCA  1094

seq1: chr4_94085188_94086345
seq2: B6Ng01-016L03.g_67_1209 (reverse)

seq1  TCTTCTCGTTATTTTACCTGATAATGTCTTTCTATAAAACATTCCAGAAT  50
      ||||||||||| |||||||||||| ||| ||| ||||||||| | |||||
seq2  TCTTCTCGTTA-TTTACCTGATAA-GTCCTTC-ATAAAACATCCAAGAAT  47

seq1  CTTTTTATTCATTTCCTATTTGGTTTCTGGGGCTCTCATCTCCCCCAGTG  100
      |||||   |||  ||||| ||||||||||| ||  |||| ||||||||||
seq2  CTTTT--ATCA--TCCTA-TTGGTTTCTGGAGCCTTCAT-TCCCCCAGTG  91

seq1  CATCCCCAGGCAGCCTCTCCGTCACCCCAGTCTACTCTTCCATTCTCTTG  150
      |||||||| |||| || ||||||| |||||||||||| ||||||||| ||
seq2  CATCCCCA-GCAG-CTTTCCGTCA-CCCAGTCTACTCCTCCATTCTCCTG  138

seq1  ATCCCTGGAAATGCCACACGTTACTAATGCAAGTCCACATCAAGTCAGAT  200
      |||||| |||||| |||||| |||| ||||||||||||||||||||||||
seq2  ATCCCT-GAAATG-CACACG-TACT-ATGCAAGTCCACATCAAGTCAGAT  184

seq1  ATATTATAAATACTGCATTATCTTTGCCCATTCACTTTTCCTTTGTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAAATACTGCATTATCTTTGCCCATTCACTTTTCCTTTGTGAAG  234

seq1  ATCTAGGATTCGGCTCTTAATAGACCCTTGATAAATATTCATGCAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGATTCGGCTCTTAATAGACCCTTGATAAATATTCATGCAGTAGA  284

seq1  ACCAGGAAGGAAATCTCCA-TTTATCCCAACAACAATCTGGGGTTTTTTT  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCAGGAAGGAAATCTCCATTTTATCCCAACAACAATCTGGGGTTTTTTT  334

seq1  TCCACCCTTTCCAAATTCCTGGGCTTTTGCCTTTTGAAAGCTACAATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCTTTCCAAATTCCTGGGCTTTTGCCTTTTGAAAGCTACAATTTT  384

seq1  CTCACTCTGAGAAAGAAAATAAATAAATAAATGCATGCTATCTTCCCCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGAGAAAGAAAATAAATAAATAAATGCATGCTATCTTCCCCTT  434

seq1  TCTGTTCTATTCTCTCCATTAATATTATGATAAAAAAAAAAGCAAAACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTATTCTCTCCATTAATATTATGATAAAAAAAAAAGCAAAACTT  484

seq1  CAAAGACATGAAAAGATGTCAGGTGTTCAAAGCTAGAAGGCAGGGTCCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACATGAAAAGATGTCAGGTGTTCAAAGCTAGAAGGCAGGGTCCTC  534

seq1  TTTGTTCGCCCTCTCTGTCTAAAAGCACTCTAGTCTCATTTTTTCCTGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCGCCCTCTCTGTCTAAAAGCACTCTAGTCTCATTTTTTCCTGTG  584

seq1  ATCTACTGCTGGGTGATCCTAATAGCTTGTTGGCATCCAATCACAGCTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTGCTGGGTGATCCTAATAGCTTGTTGGCATCCAATCACAGCTTT  634

seq1  TATAGATGTGTGCACGTGTGTGTATGTAAAAGAGTTGGTGAACTGGCCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGTGTGCACGTGTGTGTATGTAAAAGAGTTGGTGAACTGGCCTG  684

seq1  ATTTTTTAAATCAATTTACTTATTTATCTCTCTATTACTGCAAAGGTTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAATCAATTTACTTATTTATCTCTCTATTACTGCAAAGGTTGT  734

seq1  GAACCAGACAGAAGCTCTTACAAATGGACACACTTTCCTTCTGATTCCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGACAGAAGCTCTTACAAATGGACACACTTTCCTTCTGATTCCTC  784

seq1  TTTTGAACAGCTCTGTGTGACCATTGTAGTGAGGTCATATCCAACATAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACAGCTCTGTGTGACCATTGTAGTGAGGTCATATCCAACATAGA  834

seq1  GTTCCACAGTTCACTGTGTCATATTCTCCATCACTGTCCCTAACAAGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACAGTTCACTGTGTCATATTCTCCATCACTGTCCCTAACAAGATG  884

seq1  TTAGATCTCTTCAGGTTCTGGCATTTCAGCCACTGTCCTTCAAAGTACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCTCTTCAGGTTCTGGCATTTCAGCCACTGTCCTTCAAAGTACAA  934

seq1  GAAACATAATTTTAAATCTCCAGGAGTGATTTCCTCAAACACTTGATGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATAATTTTAAATCTCCAGGAGTGATTTCCTCAAACACTTGATGAA  984

seq1  TTAGGTGTTGACTTTAGTGGTTTTGAGGCACAAACAAGACAAGTAAAAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGTTGACTTTAGTGGTTTTGAGGCACAAACAAGACAAGTAAAAAC  1034

seq1  ATCTAGTTATGCCAGGCAGTGGTGGCGAATGCCTTTAATCCCAGCACTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTTATGCCAGGCAGTGGTGGCGAATGCCTTTAATCCCAGCACTTG  1084

seq1  GGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTAGTCTACAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTAGTCTACAG  1134

seq1  AGTGAATTC  1158
      |||||||||
seq2  AGTGAATTC  1143