BAC Information

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BAC

Clone NameB6Ng01-016O24
Chromosome4 (Build37)
Map Location 63,627,244 - 63,732,323
singlet/doubletdoublet
Overlap geneTnc
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016O24.bB6Ng01-016O24.g
ACCDH850761DH850762
length1,184788
definitionDH850761|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O24, 5' end.DH850762|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,731,125 - 63,732,323)(63,627,244 - 63,628,040)
sequence
gaattccacagttccaaaagagatcctttccttcgttgatcattttctgg
aacattccagatagatttagattgctgaatagctatgaagataagaattg
agaaaacaaagagaaaaagaaacaacaactatcatctatttgctattcct
cccattttgaggagaatttacttatgtgtttattcgttctgaaacccttt
tctgaccactggccccattttaagttctaggctggaattggaagctacca
cgaccaggaaaacataggccctacctttgagttctaatcatgggttatta
aaattgaaaaatatttcataaaaaatgactaagatatcctgaagtaagtg
gtacattagaaaaatctattaaggtgctagcagtaagagagaatggtgat
cagttcacttgagcaggatctttgttaggaagcaagaaagtcagtaatac
attctagtatagagacatatatggtttgagatttttatgaataaaaggtc
tagcatggatcaagaagacaatagaatcagcacaaagtaagtagagatag
gaattacagctaaggaaataaggtgaccatagattgcaaaggatcttgaa
agctgtcgtcctctattcaagctattactaggtaccagaggctcgatggc
ttacacagcagaaaataatttttcagtattatggaagctgagaaatccaa
gaccaaggcatcagttgaatcagtgtctagtgaaggtccatattctagtt
cttagattgtatctcttagctttgtccccacaatgggacacacaaagaga
cagctcccttgagccatttttgtaagagttgctacttctgtctgtgaagc
ctcaggtctcatatcctaatcatctcccaaagaatcaaactcccaaaacc
atcaaacaggcaattatttccaagtctgggaatacagatagacatttgga
ctatagcaaacctttgcccagccatttataatttgaatttgactttttga
gaaaatgatagtaaacatataggaccttaagatgatattatgagactgag
aaatgattaaaacacacctagcactagctacattgaatacttctcagaaa
gaataggttctatgaattcccaaagtacaacattccatgagaacataata
tatttaagaggagattatccaaatggcacaaaat
gaattcctgatccttctgcctctaccttctgagtgcaagtagacagttag
caactttgttcttgtttttctgcagtgctggggtttgaactcaaaacctt
cttcattctaagcaagcgctctactaactgaactacatatccagtccttg
ccttctattttttatttaaatagataattgtgaagggcttccatgtgaca
aggattaccttgcaaagtcttatgcacatgtatttgagagtacacacttc
ccttcatccaagcccatgtcccagaactctaaaacccactgttgtactca
caatccatccacctccatcagaggtcatatcacagtagacttccagtgct
tgagtcttgtcaccatttatatagatggtgtagaggccagaggtagtatc
accattcaacattgcttgagagcagtccctggggaatgggtacaggagtc
caactgcaggataaagagaaagagtgtgagagtggagggaggaggtggct
actgtccaaacacacttcagttcatctatgcagtgactaggttcctacaa
gcaggcagcccctgcttctctgtgttcctcatgacagagcttatattaaa
cttaacagtataagagccacagataagctaggaattcaaatatgatacct
caacttctcccatgagatacttgtgaaggagggagtcttttggttgtttg
tttttttatatcactttgcaagatgaagaaagtacgctcatggaatatag
tgtcttctaatctgtatccagtagacaggggggtgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_63731125_63732323
seq2: B6Ng01-016O24.b_48_1231 (reverse)

seq1  ATTTTGTGCCTATTTTGATTAATTTCTTCCTCTTTAAAATA-TATGGTCT  49
      |||||||||| |||| || ||||    ||||||| || ||| |||| || 
seq2  ATTTTGTGCC-ATTTGGA-TAAT---CTCCTCTTAAATATATTATGTTC-  44

seq1  TCATGGATGTTTGTACTTTGTGAATTCATAG-ACCTATTC-TTCTGAGGA  97
      |||||||   |||||||||| |||||||||| |||||||| ||||||| |
seq2  TCATGGAATGTTGTACTTTGGGAATTCATAGAACCTATTCTTTCTGAGAA  94

seq1  GGTTAATCCATTTGTAGCTAGTGCTA-GTGTGTTTTAATCATGTCTTCAG  146
      |  || || |  |||||||||||||| ||||||||||||||| || ||||
seq2  G--TATTCAA--TGTAGCTAGTGCTAGGTGTGTTTTAATCATTTC-TCAG  139

seq1  TCTCATTAATTATCATCTTAAGGTTCTTATATTGTTTTACTTATTCATTT  196
      ||||||  | ||||||||||||| || |||||   ||||||   ||| ||
seq2  TCTCAT--AATATCATCTTAAGG-TCCTATAT--GTTTACT--ATCA-TT  181

seq1  TTCTCAAAAAGTCAAATTCAAATTATAAATGGCTGGGCAAAGGTTTTGCT  246
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCTCAAAAAGTCAAATTCAAATTATAAATGGCTGGGCAAAGG-TTTGCT  230

seq1  ATAGTCCAAATGTCTATCTGTATT-CCAGACTTGGAAATAATTGCCTGTT  295
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATAGTCCAAATGTCTATCTGTATTCCCAGACTTGGAAATAATTGCCTGTT  280

seq1  TGATGGTTTTGGGAGTTTGATTCTTTGGGAGATGATTAGGATATGAGACC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTTTGGGAGTTTGATTCTTTGGGAGATGATTAGGATATGAGACC  330

seq1  TGAGGCTTCACAGACAGAAGTAGCAACTCTTACAAAAATGGCTCAAGGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTCACAGACAGAAGTAGCAACTCTTACAAAAATGGCTCAAGGGA  380

seq1  GCTGTCTCTTTGTGTGTCCCATTGTGGGGACAAAGCTAAGAGATACAATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCTTTGTGTGTCCCATTGTGGGGACAAAGCTAAGAGATACAATC  430

seq1  TAAGAACTAGAATATGGACCTTCACTAGACACTGATTCAACTGATGCCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTAGAATATGGACCTTCACTAGACACTGATTCAACTGATGCCTT  480

seq1  GGTCTTGGATTTCTCAGCTTCCATAATACTGAAAAATTATTTTCTGCTGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGATTTCTCAGCTTCCATAATACTGAAAAATTATTTTCTGCTGT  530

seq1  GTAAGCCATCGAGCCTCTGGTACCTAGTAATAGCTTGAATAGAGGACGAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCATCGAGCCTCTGGTACCTAGTAATAGCTTGAATAGAGGACGAC  580

seq1  AGCTTTCAAGATCCTTTGCAATCTATGGTCACCTTATTTCCTTAGCTGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCAAGATCCTTTGCAATCTATGGTCACCTTATTTCCTTAGCTGTA  630

seq1  ATTCCTATCTCTACTTACTTTGTGCTGATTCTATTGTCTTCTTGATCCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTATCTCTACTTACTTTGTGCTGATTCTATTGTCTTCTTGATCCAT  680

seq1  GCTAGACCTTTTATTCATAAAAATCTCAAACCATATATGTCTCTATACTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACCTTTTATTCATAAAAATCTCAAACCATATATGTCTCTATACTA  730

seq1  GAATGTATTACTGACTTTCTTGCTTCCTAACAAAGATCCTGCTCAAGTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATTACTGACTTTCTTGCTTCCTAACAAAGATCCTGCTCAAGTGA  780

seq1  ACTGATCACCATTCTCTCTTACTGCTAGCACCTTAATAGATTTTTCTAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCACCATTCTCTCTTACTGCTAGCACCTTAATAGATTTTTCTAAT  830

seq1  GTACCACTTACTTCAGGATATCTTAGTCATTTTTTATGAAATATTTTTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACTTACTTCAGGATATCTTAGTCATTTTTTATGAAATATTTTTCA  880

seq1  ATTTTAATAACCCATGATTAGAACTCAAAGGTAGGGCCTATGTTTTCCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATAACCCATGATTAGAACTCAAAGGTAGGGCCTATGTTTTCCTG  930

seq1  GTCGTGGTAGCTTCCAATTCCAGCCTAGAACTTAAAATGGGGCCAGTGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGGTAGCTTCCAATTCCAGCCTAGAACTTAAAATGGGGCCAGTGGT  980

seq1  CAGAAAAGGGTTTCAGAACGAATAAACACATAAGTAAATTCTCCTCAAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGGGTTTCAGAACGAATAAACACATAAGTAAATTCTCCTCAAAA  1030

seq1  TGGGAGGAATAGCAAATAGATGATAGTTGTTGTTTCTTTTTCTCTTTGTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAATAGCAAATAGATGATAGTTGTTGTTTCTTTTTCTCTTTGTT  1080

seq1  TTCTCAATTCTTATCTTCATAGCTATTCAGCAATCTAAATCTATCTGGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATTCTTATCTTCATAGCTATTCAGCAATCTAAATCTATCTGGAA  1130

seq1  TGTTCCAGAAAATGATCAACGAAGGAAAGGATCTCTTTTGGAACTGTGGA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGAAAATGATCAACGAAGGAAAGGATCTCTTTTGGAACTGTGGA  1180

seq1  ATTC  1199
      ||||
seq2  ATTC  1184

seq1: chr4_63627244_63628040
seq2: B6Ng01-016O24.g_66_853

seq1  GAATTCCTGATCCTTCTGCCTCTACCTTCTGAGTGCAAGTAGACAGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCCTTCTGCCTCTACCTTCTGAGTGCAAGTAGACAGTTAG  50

seq1  CAACTTTGTTCTTGTTTTTCTGCAGTGCTGGGGTTTGAACTCAAAACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTGTTCTTGTTTTTCTGCAGTGCTGGGGTTTGAACTCAAAACCTT  100

seq1  CTTCATTCTAAGCAAGCGCTCTACTAACTGAACTACATATCCAGTCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCTAAGCAAGCGCTCTACTAACTGAACTACATATCCAGTCCTTG  150

seq1  CCTTCTATTTTTTATTTAAATAGATAATTGTGAAGGGCTTCCATGTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTATTTTTTATTTAAATAGATAATTGTGAAGGGCTTCCATGTGACA  200

seq1  AGGATTACCTTGCAAAGTCTTATGCACATGTATTTGAGAGTACACACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTACCTTGCAAAGTCTTATGCACATGTATTTGAGAGTACACACTTC  250

seq1  CCTTCATCCAAGCCCATGTCCCAGAACTCTAAAACCCACTGTTGTACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCCAAGCCCATGTCCCAGAACTCTAAAACCCACTGTTGTACTCA  300

seq1  CAATCCATCCACCTCCATCAGAGGTCATATCACAGTAGACTTCCAGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCATCCACCTCCATCAGAGGTCATATCACAGTAGACTTCCAGTGCT  350

seq1  TGAGTCTTGTCACCATTTATATAGATGGTGTAGAGGCCAGAGGTAGTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTGTCACCATTTATATAGATGGTGTAGAGGCCAGAGGTAGTATC  400

seq1  ACCATTCAACATTGCTTGAGAGCAGTCCCTGGGGAATGGGTACAGGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCAACATTGCTTGAGAGCAGTCCCTGGGGAATGGGTACAGGAGTC  450

seq1  CAACTGCAGGATAAAGAGAAAGAGTGTGAGAGTGGAGGGAGGAGGTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCAGGATAAAGAGAAAGAGTGTGAGAGTGGAGGGAGGAGGTGGCT  500

seq1  ACTGTCCAAACACACTTCAGTTCATCTATGCAGTGACTAGGTTCCTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCAAACACACTTCAGTTCATCTATGCAGTGACTAGGTTCCTACAA  550

seq1  GCAGGCAGCCCCTGCTTCTCTGTGTTCCTCATGACAGAGCTTATATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGCCCCTGCTTCTCTGTGTTCCTCATGACAGAGCTTATATTAAA  600

seq1  CTTAACAGTATAAGAGCCACAGATAAGCTAGGAATTCAAATATGATACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAGTATAAGAGCCACAGATAAGCTAGGAATTCAAATATGATACCT  650

seq1  CAACTTCTCCCATGAGATACTTGTGAAGGAGGGGAGTCTTTTGGTTTGTT  700
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  CAACTTCTCCCATGAGATACTTGTGAAGGA-GGGAGTCTTTTGG-TTGTT  698

seq1  TTGTTTTTTTTTATATCACTTTGCAAAGATGAAGAAAGTAAGGCTCATGG  750
         | ||||||||||||||||||| |||||||||||||| | ||||||||
seq2  ---TGTTTTTTTATATCACTTTGC-AAGATGAAGAAAGT-ACGCTCATGG  743

seq1  AATATAGGTGTCTTCTAATCTGTATCCAGTAGGACATGGGGGTGAGG  797
      |||||| |||||||||||||||||||||||| |||| ||||||||||
seq2  AATATA-GTGTCTTCTAATCTGTATCCAGTA-GACAGGGGGGTGAGG  788