BAC Information

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BAC

Clone NameB6Ng01-016P12
Chromosome4 (Build37)
Map Location 154,350,750 - 154,532,279
singlet/doubletdoublet
Overlap genePank4, Plch2, Pex10, Rer1, Morn1, Ski
Upstream geneBC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, LOC100043358
Downstream gene2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016P12.bB6Ng01-016P12.g
ACCDH850783DH850784
length646896
definitionDH850783|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P12, 5' end.DH850784|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,531,634 - 154,532,279)(154,350,750 - 154,351,644)
sequence
gaattcttgcgtgtggccaagaaggagaaactgcgggaagccacagaggc
caagcgcagtttgaggaaagagattgagcggctccgagctgaaaacgaga
agaagatgaaagaggccaacgagtcccgggtgcgcctgaagcgagagctg
gagcaggcgcggcaggtccgggtgtgtgacaagggctgcgaggccgggcg
cctgcgtgccaagtactcagcccaggtacctaccgtagtggatttgctag
taacactggcatgtacagaggtagctgctgtcaccaatccaaggtcctca
gtttacccattcctagctggatgtgaggtgatggtgtgtcacgcctggtg
tgtccagcagacctgggcctgggtgctggggactattttccatagccatg
ggtggaagtccaccccccactaggaccattatggccccagaatacagcct
ttcctccctgctgctggcttgggaagcaagctctaaactgggatcaggag
atgggcacacaaaggcagtttctgcagcttagggctccatcccagtgagc
ccttgggggaaaaggtcttcccagtttgttttcactgctgtttgatgctg
gtgctaggcactgctgacctctcgcttggcgtccctttcagattga
gaattcaacttcccagatccctactccaaggtgagccatgtagactacaa
gtagggtgcagaggactcagtagcattttgttgtgccagcctcaggaggt
ctaagctcacactggctagttctaggtgcacagctctactctaggcgtgt
gttagcactcctccatccctctggctaggagccgtgggccccttgtttcc
ctgttgtcagccaccttgcccttcctcagctgcccatgcacagtggcctc
tgggggtgcatacccggtgccctcctaactccactaagtcttgtgggcca
gagtgcctccctgcttcacccaacaccaggtagacctgaggactgcccca
aatcagtaagtagcctggtacccagccctgagcgtcacctctcgggagca
cgacaccaaatgcccccttctccctggttagtgttttcagtcctcgttga
ggccccttcatctgctgccctgcagagacctccctagagggtacaaggag
tggtgtgggcctaccttcagagtgagcaccaataaagcaacgcctgtgtg
tctttcccacaggtgaagcagaaagaaaacggcctcgcactaaaatgctt
tcagagcgtgacgcgctcgctggactcactaggctgggaagagcggcagc
tggccctggtgaaggggctcttagctgggaatgtcttttgactggggagc
caaggctgtgtctgagttaggtatctgaggtgtgcgcgcctgctccttct
ccctctgaggtggcttggaactggttctgttgcagaagtatgctattctg
ccaccaggctgtctagactcagagccacttgctctgggttggctggccct
gactgtgatgagcaaaacacacttgaagtctaggtctttgtgctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154531634_154532279
seq2: B6Ng01-016P12.b_36_681 (reverse)

seq1  TCAATCTGAAAGGGACGCCAAGCGAGAGGTCAGCAGTGCCTAGCACCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTGAAAGGGACGCCAAGCGAGAGGTCAGCAGTGCCTAGCACCAGC  50

seq1  ATCAAACAGCAGTGAAAACAAACTGGGAAGACCTTTTCCCCCAAGGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACAGCAGTGAAAACAAACTGGGAAGACCTTTTCCCCCAAGGGCTC  100

seq1  ACTGGGATGGAGCCCTAAGCTGCAGAAACTGCCTTTGTGTGCCCATCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGATGGAGCCCTAAGCTGCAGAAACTGCCTTTGTGTGCCCATCTCC  150

seq1  TGATCCCAGTTTAGAGCTTGCTTCCCAAGCCAGCAGCAGGGAGGAAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCAGTTTAGAGCTTGCTTCCCAAGCCAGCAGCAGGGAGGAAAGGC  200

seq1  TGTATTCTGGGGCCATAATGGTCCTAGTGGGGGGTGGACTTCCACCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTGGGGCCATAATGGTCCTAGTGGGGGGTGGACTTCCACCCATG  250

seq1  GCTATGGAAAATAGTCCCCAGCACCCAGGCCCAGGTCTGCTGGACACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGAAAATAGTCCCCAGCACCCAGGCCCAGGTCTGCTGGACACACC  300

seq1  AGGCGTGACACACCATCACCTCACATCCAGCTAGGAATGGGTAAACTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTGACACACCATCACCTCACATCCAGCTAGGAATGGGTAAACTGAG  350

seq1  GACCTTGGATTGGTGACAGCAGCTACCTCTGTACATGCCAGTGTTACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGATTGGTGACAGCAGCTACCTCTGTACATGCCAGTGTTACTAG  400

seq1  CAAATCCACTACGGTAGGTACCTGGGCTGAGTACTTGGCACGCAGGCGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCACTACGGTAGGTACCTGGGCTGAGTACTTGGCACGCAGGCGCC  450

seq1  CGGCCTCGCAGCCCTTGTCACACACCCGGACCTGCCGCGCCTGCTCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTCGCAGCCCTTGTCACACACCCGGACCTGCCGCGCCTGCTCCAGC  500

seq1  TCTCGCTTCAGGCGCACCCGGGACTCGTTGGCCTCTTTCATCTTCTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCTTCAGGCGCACCCGGGACTCGTTGGCCTCTTTCATCTTCTTCTC  550

seq1  GTTTTCAGCTCGGAGCCGCTCAATCTCTTTCCTCAAACTGCGCTTGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGCTCGGAGCCGCTCAATCTCTTTCCTCAAACTGCGCTTGGCCT  600

seq1  CTGTGGCTTCCCGCAGTTTCTCCTTCTTGGCCACACGCAAGAATTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTTCCCGCAGTTTCTCCTTCTTGGCCACACGCAAGAATTC  646

seq1: chr4_154350750_154351644
seq2: B6Ng01-016P12.g_70_964

seq1  GAATTCAACTTCCCAGATCCCTACTCCAAGGTGAGCCATGTAGACTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTCCCAGATCCCTACTCCAAGGTGAGCCATGTAGACTACAA  50

seq1  GTAGGGTGCAGAGGACTCAGTAGCATTTTGTTGTGCCAGCCTCAGGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTGCAGAGGACTCAGTAGCATTTTGTTGTGCCAGCCTCAGGAGGT  100

seq1  CTAAGCTCACACTGGCTAGTTCTAGGTGCACAGCTCTACTCTAGGCGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCACACTGGCTAGTTCTAGGTGCACAGCTCTACTCTAGGCGTGT  150

seq1  GTTAGCACTCCTCCATCCCTCTGGCTAGGAGCCGTGGGCCCCTTGTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCACTCCTCCATCCCTCTGGCTAGGAGCCGTGGGCCCCTTGTTTCC  200

seq1  CTGTTGTCAGCCACCTTGCCCTTCCTCAGCTGCCCATGCACAGTGGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCAGCCACCTTGCCCTTCCTCAGCTGCCCATGCACAGTGGCCTC  250

seq1  TGGGGGTGCATACCCGGTGCCCTCCTAACTCCACTAAGTCTTGTGGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGCATACCCGGTGCCCTCCTAACTCCACTAAGTCTTGTGGGCCA  300

seq1  GAGTGCCTCCCTGCTTCACCCAACACCAGGTAGACCTGAGGACTGCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCTCCCTGCTTCACCCAACACCAGGTAGACCTGAGGACTGCCCCA  350

seq1  AATCAGTAAGTAGCCTGGTACCCAGCCCTGAGCGTCACCTCTCGGGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTAAGTAGCCTGGTACCCAGCCCTGAGCGTCACCTCTCGGGAGCA  400

seq1  CGACACCAAATGCCCCCTTCTCCCTGGTTAGTGTTTTCAGTCCTCGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACCAAATGCCCCCTTCTCCCTGGTTAGTGTTTTCAGTCCTCGTTGA  450

seq1  GGCCCCTTCATCTGCTGCCCTGCAGAGACCTCCCTAGAGGGTACAAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTTCATCTGCTGCCCTGCAGAGACCTCCCTAGAGGGTACAAGGAG  500

seq1  TGGTGTGGGCCTACCTTCAGAGTGAGCACCAATAAAGCAACGCCTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGGGCCTACCTTCAGAGTGAGCACCAATAAAGCAACGCCTGTGTG  550

seq1  TCTTTCCCACAGGTGAAGCAGAAAGAAAACGGCCTCGCACTAAAATGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCACAGGTGAAGCAGAAAGAAAACGGCCTCGCACTAAAATGCTT  600

seq1  TCAGAGCGTGACGCGCTCGCTGGACTCACTAGGCTGGGAAGAGCGGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCGTGACGCGCTCGCTGGACTCACTAGGCTGGGAAGAGCGGCAGC  650

seq1  TGGCCCTGGTGAAGGGGCTCTTAGCTGGGAATGTC-TTTGACTGGGGAGC  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGCCCTGGTGAAGGGGCTCTTAGCTGGGAATGTCTTTTGACTGGGGAGC  700

seq1  CAAGGCTGTGTCTGAG-TAGGTATCTGAGGTGTGCGCGCCTGCTCCTTCT  748
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAAGGCTGTGTCTGAGTTAGGTATCTGAGGTGTGCGCGCCTGCTCCTTCT  750

seq1  CCCTCTGAGGTGGCTTGGAACTGGTTCTGTTGCAGAAGTATGCTATTCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGAGGTGGCTTGGAACTGGTTCTGTTGCAGAAGTATGCTATTCTG  800

seq1  CCACCAGGCTGTCTAGACCCAGAGCCACTTGCTCTGGGTTGGCTGGCCCT  848
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCACCAGGCTGTCTAGACTCAGAGCCACTTGCTCTGGGTTGGCTGGCCCT  850

seq1  GACAGTGATGAGCAAGAGCACACATGAAGTCATAGGTCTTTGTGCTG  895
      ||| ||||||||||| | ||||| ||||||| |||||||||||||||
seq2  GACTGTGATGAGCAA-AACACACTTGAAGTC-TAGGTCTTTGTGCTG  895