BAC Information

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BAC

Clone NameB6Ng01-017C13
Chromosome4 (Build37)
Map Location 96,492,179 - 96,622,968
singlet/doubletdoublet
Overlap genenone
Upstream geneHook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017C13.bB6Ng01-017C13.g
ACCDH850920DH850921
length1,0221,048
definitionDH850920|Mus musculus domesticus DNA, BAC clone: B6Ng01-017C13, 5' end.DH850921|Mus musculus domesticus DNA, BAC clone: B6Ng01-017C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,492,179 - 96,493,206)(96,621,914 - 96,622,968)
sequence
gaattcattttagccctgtccttagtgaacactaaacctgtgaggcaaga
aaactcagtcaccaattacagtaatgctctaaggaaggacctcatggcct
ctagggcacacagagtgaaggtctctaagcgtgagtgagggtgtgctttc
cagaagagaaggctacggagcaggcttttaagtaatgtctcagttgacta
aagaacaagggtgagaaggaagtcaaggctgagtgaggtactgaaattcc
tggctaagtagatggtgtgtagaagactaagccaccaagagaggaatgca
gagtggaaacaacaaagcaatgaaaggcccagtgggagaattgagaagtg
ccaactctatcctggaaactgtgagtagcctcagccaacagcaaagcgga
ctcatagtgaccctatacagctctgcaatcctggctgaagaacagatttc
tttaaccatgcttcttctgttgtgagagtcattgttgactatttctttca
tgtctgctaggcaaatacttttcttcctttgatacatcactggacggaag
caacccttgggacattccttatcattagcgaaaagagactcacaaatggg
agctgactgaacaacaggtttggcattctgatctcccagagaaacactat
agaacaggtgggaactgttagctgagttcagatttcaactccaagacaat
tttgttactttaagaaacatatgcaaactgttttacctgaggtcccatca
tgatataaaacaactactgatgactgctttaattgacatactcaaaaaat
atgaaaagacctcttgcttacaaatgcccttccaagtggagggtaggtag
tattggattctgaaactccattaatgttttctcattttctccagaagaaa
tttggaaaggtgggtgcccaaactatgctatctctctgcatgacctccat
gcactctatcatattttctgcctttgatccaagattagtgctcccatggg
aactcattgctgaactgcctga
gaattcacttaatgtgattaattaagcaagagaagacaagctaactaact
tcaactgtcttttaactctcaatataaaaagtagaaaatataagtaacta
caaattgtaaaatttaaatacatagataagttagcaatatcaaaataggg
cctgggattttattgtcttattaatattaaagggccatgttatgcatact
gtagtgttatgggaagaatccctctctgatggaaaaatatatctggagat
tgtgtgctcctgtctaatagaactttttattattgcttttacttgtagta
caaaaaaatcatttgtctattagtctcaagaattccaagcttagaaaata
tgttcactaaaaatgaaaatgtgcaagccaggcatgttggctgatgtctc
taatcctagttagtaccttgaagggtgggacaagaggatcattttagttt
taaggctagactagactaaatagcatactccaaaatctaaaataaaaaaa
taaactaaatttaatgtattcaatccgtattaaccatagcccatttggaa
aataatggagcattaggaaattcattgtaagagatacatttgaaaatcat
actgagttatacttgcacatcaaaaggatagcttatgaaatccagaaata
taatcctcactgaaaaagtagtttatagtttataaaatgttgaagaatga
gagaggcataggtgatgtgaaagcagaaagcagatatattgaaagcagaa
agggtgttgcaggatatttgattacgctgtgaaccccgagattgtgttat
ttaataaaaaaaatcccatatctagttgtggtgtggctcatcccttagca
cataccattaattccagacaatgaacataatctactttgtagaagaaagt
gtccaggtttgaacgtgacttattattgaatggcagactaaatgaccaat
cagacaaaatttgatatatagaatatacccaacctccccagacaaagaga
agaagaggcttatttaagagaatgttgactgaaaaaaatggaaagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_96492179_96493206
seq2: B6Ng01-017C13.b_48_1069

seq1  GAATTCATTTTAGCCCTGTCCTTAGTGAACACTAAACCTGTGAGGCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTAGCCCTGTCCTTAGTGAACACTAAACCTGTGAGGCAAGA  50

seq1  AAACTCAGTCACCAATTACAGTAATGCTCTAAGGAAGGACCTCATGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGTCACCAATTACAGTAATGCTCTAAGGAAGGACCTCATGGCCT  100

seq1  CTAGGGCACACAGAGTGAAGGTCTCTAAGCGTGAGTGAGGGTGTGCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCACACAGAGTGAAGGTCTCTAAGCGTGAGTGAGGGTGTGCTTTC  150

seq1  CAGAAGAGAAGGCTACGGAGCAGGCTTTTAAGTAATGTCTCAGTTGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGAAGGCTACGGAGCAGGCTTTTAAGTAATGTCTCAGTTGACTA  200

seq1  AAGAACAAGGGTGAGAAGGAAGTCAAGGCTGAGTGAGGTACTGAAATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAGGGTGAGAAGGAAGTCAAGGCTGAGTGAGGTACTGAAATTCC  250

seq1  TGGCTAAGTAGATGGTGTGTAGAAGACTAAGCCACCAAGAGAGGAATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAGTAGATGGTGTGTAGAAGACTAAGCCACCAAGAGAGGAATGCA  300

seq1  GAGTGGAAACAACAAAGCAATGAAAGGCCCAGTGGGAGAATTGAGAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAAACAACAAAGCAATGAAAGGCCCAGTGGGAGAATTGAGAAGTG  350

seq1  CCAACTCTATCCTGGAAACTGTGAGTAGCCTCAGCCAACAGCAAAGCGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCTATCCTGGAAACTGTGAGTAGCCTCAGCCAACAGCAAAGCGGA  400

seq1  CTCATAGTGACCCTATACAGCTCTGCAATCCTGGCTGAAGAACAGATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGTGACCCTATACAGCTCTGCAATCCTGGCTGAAGAACAGATTTC  450

seq1  TTTAACCATGCTTCTTCTGTTGTGAGAGTCATTGTTGACTATTTCTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCATGCTTCTTCTGTTGTGAGAGTCATTGTTGACTATTTCTTTCA  500

seq1  TGTCTGCTAGGCAAATACTTTTCTTCCTTTGATACATCACTGGACGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTAGGCAAATACTTTTCTTCCTTTGATACATCACTGGACGGAAG  550

seq1  CAACCCTTGGGACATTCCTTATCATTAGCGAAAAGAGACTCACAAATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTTGGGACATTCCTTATCATTAGCGAAAAGAGACTCACAAATGGG  600

seq1  AGCTGACTGAACAACAGGTTTGGCATTCTGATCTCCCAGAGAAACACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTGAACAACAGGTTTGGCATTCTGATCTCCCAGAGAAACACTAT  650

seq1  AGAACAGGTGGGAACTGTTAGCTGAGTTCAGATTTCAACTCCAAGACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGGTGGGAACTGTTAGCTGAGTTCAGATTTCAACTCCAAGACAAT  700

seq1  TTTGTTACTTTAAGAAACATATGCAAACTGTTTTACCTGAGGTCCCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTACTTTAAGAAACATATGCAAACTGTTTTACCTGAGGTCCCATCA  750

seq1  TGATATAAAACAACTACTGATGACTGCTTTAATTGACATACTCAAAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAAACAACTACTGATGACTGCTTTAATTGACATACTCAAAAAAT  800

seq1  ATG-AAAGACCTCTTGCTTACAAATGCCCTTCCAAGTGGAGGGTAGGTAG  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGACCTCTTGCTTACAAATGCCCTTCCAAGTGGAGGGTAGGTAG  850

seq1  TATTGGATTCTGAAACTCCATTAATGTTTTCTCATTTTCTCCAGAAGACA  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATTGGATTCTGAAACTCCATTAATGTTTTCTCATTTTCTCCAGAAGA-A  899

seq1  TTTTGGAAAGGT-GGTGCCCAAACTATGGCTATCTCTCTGCAATGA-CTC  947
       ||||||||||| |||||||||||||| ||||||||||||| |||| |||
seq2  ATTTGGAAAGGTGGGTGCCCAAACTAT-GCTATCTCTCTGC-ATGACCTC  947

seq1  CATGCACTCTATCATATTTTCCTGCCTTTTGGTTCCAAGATTTAGTGCTC  997
      |||||||||||||||||||| ||||||||  | ||||||| |||||||| 
seq2  CATGCACTCTATCATATTTT-CTGCCTTT--GATCCAAGA-TTAGTGCT-  992

seq1  CCCATGGGAACTCAGTGCTGAAACTGCCTGA  1028
      |||||||||||||| ||||| ||||||||||
seq2  CCCATGGGAACTCATTGCTG-AACTGCCTGA  1022

seq1: chr4_96621914_96622968
seq2: B6Ng01-017C13.g_71_1118 (reverse)

seq1  CCTCTCTCCATTTTTTTTTCAGTCCAACTATCTCTTAAAT-AGCCTCTTT  49
      ||||| ||||  ||||||||||| ||||  |||||||||| |||||| ||
seq2  CCTCTTTCCA--TTTTTTTCAGT-CAACATTCTCTTAAATAAGCCTC-TT  46

seq1  CTTCTCTTTGTTCTTGGGGGAGTTGGGTATATTCTATATTATCAAAATTT  99
      |||||||||||   |||||  ||||||||||||||||| |||| ||||||
seq2  CTTCTCTTTGT--CTGGGGAGGTTGGGTATATTCTATA-TATC-AAATTT  92

seq1  TGTCTGATTGGTCATTTAGTCTGCCATTCAATTATAAGTCACGTTCAAAC  149
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTCTGATTGGTCATTTAGTCTGCCATTCAATAATAAGTCACGTTCAAAC  142

seq1  CTGGACACTTTCTTCTACAAAGTAGATTATGTTCATTGTCTGGAATTAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACTTTCTTCTACAAAGTAGATTATGTTCATTGTCTGGAATTAAT  192

seq1  GGTATGTGCTAAGGGATGAGCCACACCACAACTAGATATGGGATTTTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTGCTAAGGGATGAGCCACACCACAACTAGATATGGGATTTTTTT  242

seq1  TATTAAATAACACAATCTCGGGGTTCACAGCGTAATCAAATATCCTGCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATAACACAATCTCGGGGTTCACAGCGTAATCAAATATCCTGCAA  292

seq1  CACCCTTTCTGCTTTCAATATATCTGCTTTCTGCTTTCACATCACCTATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTCTGCTTTCAATATATCTGCTTTCTGCTTTCACATCACCTATG  342

seq1  CCTCTCTCATTCTTCAACATTTTATAAACTATAAACTACTTTTTCAGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCATTCTTCAACATTTTATAAACTATAAACTACTTTTTCAGTGA  392

seq1  GGATTATATTTCTGGATTTCATAAGCTATCCTTTTGATGTGCAAGTATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATATTTCTGGATTTCATAAGCTATCCTTTTGATGTGCAAGTATAA  442

seq1  CTCAGTATGATTTTCAAATGTATCTCTTACAATGAATTTCCTAATGCTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATGATTTTCAAATGTATCTCTTACAATGAATTTCCTAATGCTCC  492

seq1  ATTATTTTCCAAATGGGCTATGGTTAATACGGATTGAATACATTAAATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCCAAATGGGCTATGGTTAATACGGATTGAATACATTAAATTT  542

seq1  AGTTTATTTTTTTATTTTAGATTTTGGAGTATGCTATTTAGTCTAGTCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTTTTTATTTTAGATTTTGGAGTATGCTATTTAGTCTAGTCTA  592

seq1  GCCTTAAAACTAAAATGATCCTCTTGTCCCACCCTTCAAGGTACTAACTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAAAACTAAAATGATCCTCTTGTCCCACCCTTCAAGGTACTAACTA  642

seq1  GGATTAGAGACATCAGCCAACATGCCTGGCTTGCACATTTTCATTTTTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGAGACATCAGCCAACATGCCTGGCTTGCACATTTTCATTTTTAG  692

seq1  TGAACATATTTTCTAAGCTTGGAATTCTTGAGACTAATAGACAAATGATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATATTTTCTAAGCTTGGAATTCTTGAGACTAATAGACAAATGATT  742

seq1  TTTTTGTACTACAAGTAAAAGCAATAATAAAAAGTTCTATTAGACAGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTACTACAAGTAAAAGCAATAATAAAAAGTTCTATTAGACAGGAG  792

seq1  CACACAATCTCCAGATATATTTTTCCATCAGAGAGGGATTCTTCCCATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATCTCCAGATATATTTTTCCATCAGAGAGGGATTCTTCCCATAA  842

seq1  CACTACAGTATGCATAACATGGCCCTTTAATATTAATAAGACAATAAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGTATGCATAACATGGCCCTTTAATATTAATAAGACAATAAAAT  892

seq1  CCCAGGCCCTATTTTGATATTGCTAACTTATCTATGTATTTAAATTTTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCCCTATTTTGATATTGCTAACTTATCTATGTATTTAAATTTTAC  942

seq1  AATTTGTAGTTACTTATATTTTCTACTTTTTATATTGAGAGTTAAAAGAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTAGTTACTTATATTTTCTACTTTTTATATTGAGAGTTAAAAGAC  992

seq1  AGTTGAAGTTAGTTAGCTTGTCTTCTCTTGCTTAATTAATCACATTAAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGTTAGTTAGCTTGTCTTCTCTTGCTTAATTAATCACATTAAGT  1042

seq1  GAATTC  1055
      ||||||
seq2  GAATTC  1048