BAC Information

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BAC

Clone NameB6Ng01-017D10
Chromosome4 (Build37)X (Build37)
Map Location 65,173,345 - 65,173,809133,057,246 - 133,057,860
singlet/doubletsingletsinglet
Overlap geneAstn2
Upstream genePappa
Downstream geneTrim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017D10.bB6Ng01-017D10.g
ACCDH850960DH850961
length922616
definitionDH850960|Mus musculus domesticus DNA, BAC clone: B6Ng01-017D10, 5' end.DH850961|Mus musculus domesticus DNA, BAC clone: B6Ng01-017D10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,173,345 - 65,173,809)(133,057,246 - 133,057,860)
sequence
gaattccttttcaaatatgtaactcaatggtgtttagtgtatctacaaaa
ctgtgtacctatccccacaatttgactttagaaaatacttttctccccta
aaatataaatgcttcccctcctaccaccttagtagtgaaaaccttattcc
tcctttttccccattttttattagatattttcttcatttaaatttcaaat
gctaccccgaaagtcccctattccctccccccgccctgctcccctaccca
cccactcccacttatttgccctggtattcccctgtactggggcatatata
aagtttgctagaccaaggggcctctcttccctgtgatggccgactaggcc
atcttctgctacatgtgcagctagagacacgagctctggggggtactgat
tagttcatattgttgtttcttctatagggctgcagaccccttcagctcct
tgggtgcttattcctccttttttaagaccttaaaaactacttatgtagta
ttttatgaagcaggaggaaggattatatatccaagaccagcctctgctac
atttcaaagcctagtcttaaaacaacaagaacaacaaacactgaatttag
gccatagtaatgcctcaataaatataaataaatatatttatttaatttat
ttatttggaatttgcccccttttcttgagccattcattctgctgtcttct
gatacaatttaacttcatttgagaggatgtctaccaagacaatgttttct
ggttccaatataactaaacagaaactagtgtggtagaagagtaaaaaaac
aaaaacaaaaacaaaacaaaacaaaaaaaccttcaccactataaacaatg
agtaagtgcatttgaagaataaaaatgtttcaaatatttttttaaagtgc
tgatggtaagttgtgtgtttgg
gaattctctgtttagctctgcaccaaactttcaattgggttatttggttt
tctggaggttgacatcttgagttcttcatatattttagacattaggctgc
tgttggatgtgggattagtgaagattttattcccaatctgtaggtttcct
atttatcctatggtcagtgtcttttgcctcacagaagctgtttagtttca
tgacatcctatttatcaattgttgattttagagcctgaaccactggtgtt
ttgtttgggaacttttcccctaagccaatgagtttgaggctctttctcac
tttctcttctatgagaaggatggtggagctcagggaggtgggacaggtcc
tgtgtcagctgggctgtgtgggtgtcccaacaggtgtgtgtatttgtgct
agattctcacttatgtttttcctttgtgtggtcctcctgagaggatcaca
agatgttgcagttgggcacatatgaggctgctgatcaacttttttttttt
acttgaaaagaaatctattttatttattttttaagtgaaatttattttat
ttttttaattaggtattttcctcattttacattttcaatgctatcccaaa
ggtcccccatatccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_65173345_65173809
seq2: B6Ng01-017D10.b_210_503 (reverse)

seq1  AGCACCCAAGGAGCTGAAGGGGTCTGCAACCCAATAGGTGGAACAACAAT  50
      |||||||||||||||||||||||||||| ||| ||||  | |||||||||
seq2  AGCACCCAAGGAGCTGAAGGGGTCTGCAGCCCTATAGAAGAAACAACAAT  50

seq1  ATGAACTAATCAGTA-CCCCCAGAGATGGTGTCTCTAGCTGCATATGTAG  99
      ||||||||||||||| ||||||||| | ||||||||||||||| ||||||
seq2  ATGAACTAATCAGTACCCCCCAGAGCTCGTGTCTCTAGCTGCACATGTAG  100

seq1  CAGAAGATGGCCTAGTCGGCTATCACTGGGAAGAGAGGCCCCTTGGTATT  149
      |||||||||||||||||||| ||||| |||||||||||||||||||| | 
seq2  CAGAAGATGGCCTAGTCGGCCATCACAGGGAAGAGAGGCCCCTTGGTCTA  150

seq1  GCAAACTT--TATATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTG  197
      ||||||||  |||||||| |||||||||||||| ||||||| || |||||
seq2  GCAAACTTTATATATGCCCCAGTACAGGGGAATACCAGGGCAAATAAGTG  200

seq1  GGAGTGGGTGGGTAGAGGAGCAGGGTGGGGGGAGGGTATAGGGAACTTTT  247
      ||||||||||||||| ||||||||| |||||||||| |||||| ||||| 
seq2  GGAGTGGGTGGGTAGGGGAGCAGGGCGGGGGGAGGGAATAGGGGACTTTC  250

seq1  GGGATAGCATTTGAAATGTATATAAAGAAAATATCTAAGAAAGAAAGAAA  297
      ||| ||||||||||||| || || |||||||||||||| ||| |      
seq2  GGGGTAGCATTTGAAATTTAAATGAAGAAAATATCTAATAAAAA------  294

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGG  347
                                                        
seq2  --------------------------------------------------  294

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAGCCAGTTACACCA  397
                                                        
seq2  --------------------------------------------------  294

seq1  GAAAAGTCTCTTTTTCTCATAGAAATAGCCTCAATTTCTATGTAAATGAA  447
                                                        
seq2  --------------------------------------------------  294

seq1  GAAAATATCTAATAAAAA  465
                        
seq2  ------------------  294

seq1: chrX_133057246_133057860
seq2: B6Ng01-017D10.g_71_686

seq1  GAATTCTCTGTTTAGCTCTGCACCAAACTTTCAATTGGGTTATTTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAGCTCTGCACCAAACTTTCAATTGGGTTATTTGGTTT  50

seq1  TCTGGAGGTTGACATCTTGAGTTCTTCATATATTTTAGACATTAGGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGTTGACATCTTGAGTTCTTCATATATTTTAGACATTAGGCTGC  100

seq1  TGTTGGATGTGGGATTAGTGAAGATTTTATTCCCAATCTGTAGGTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGATGTGGGATTAGTGAAGATTTTATTCCCAATCTGTAGGTTTCCT  150

seq1  ATTTATCCTATGGTCAGTGTCTTTTGCCTCACAGAAGCTGTTTAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCCTATGGTCAGTGTCTTTTGCCTCACAGAAGCTGTTTAGTTTCA  200

seq1  TGACATCCTATTTATCAATTGTTGATTTTAGAGCCTGAACCACTGGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCTATTTATCAATTGTTGATTTTAGAGCCTGAACCACTGGTGTT  250

seq1  TTGTTTGGGAACTTTTCCCCTAAGCCAATGAGTTTGAGGCTCTTTCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGGAACTTTTCCCCTAAGCCAATGAGTTTGAGGCTCTTTCTCAC  300

seq1  TTTCTCTTCTATGAGAAGGATGGTGGAGCTCAGGGAGGTGGGACAGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCTATGAGAAGGATGGTGGAGCTCAGGGAGGTGGGACAGGTCC  350

seq1  TGTGTCAGCTGGGCTGTGTGGGTGTCCCAACAGGTGTGTGTATTTGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGCTGGGCTGTGTGGGTGTCCCAACAGGTGTGTGTATTTGTGCT  400

seq1  AGATTCTCACTTATGTTTTTCCTTTGTGTGGTCCTCCTGAGAGGATCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCACTTATGTTTTTCCTTTGTGTGGTCCTCCTGAGAGGATCACA  450

seq1  AGATGTTGCAGTTGGGCACATATGAGGCTGCTGATCAACTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTGCAGTTGGGCACATATGAGGCTGCTGATCAACTTTTTTTTTTT  500

seq1  ACTTGAAAAGAAATCTATTTTATTTATTTTTTAAGTGAAATTTATTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAAAGAAATCTATTTTATTTATTTTTTAAGTGAAATTTATTTTAT  550

seq1  TTTTTTAATTAGGTATTTTCCTCA-TTTACATTTTCAATGCTATCCCAAA  599
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTTTTAATTAGGTATTTTCCTCATTTTACATTTTCAATGCTATCCCAAA  600

seq1  GGTCCCCCATACCCAC  615
      ||||||||||| ||||
seq2  GGTCCCCCATATCCAC  616