BAC Information

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BAC

Clone NameB6Ng01-017F11
Chromosome4 (Build37)
Map Location 128,660,910 - 128,839,253
singlet/doubletdoublet
Overlap geneAk2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp
Upstream gene4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc
Downstream geneYars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017F11.bB6Ng01-017F11.g
ACCDH851053DH851054
length766438
definitionDH851053|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F11, 5' end.DH851054|Mus musculus domesticus DNA, BAC clone: B6Ng01-017F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,838,469 - 128,839,253)(128,660,910 - 128,661,353)
sequence
gaattctctgcacagctccagagattgacctaaataggcagcggcatgaa
aaactaacacacacacacaggcacagaaaaagccaaggtcaggtggattg
gactcccagctgagaaacagccgcaccttggaagctcagcatgtttatta
tatacagtgaaggaggaggccaggttattggatacaactgagccaggaag
agatctcagtagggaagtaatcttcaggccataaacatcagggagatgga
gctacagtggccattttccgcacagactgtcaacattggcacttggacaa
gaggaaagctttgccatccctctgagtctcactcaccccaggaagaattt
tgccagtctatggttctgaggccttggctcttgacatgactgtgacaagt
caccagaacactttcactgaggacttgctccctacaacggagtacttgaa
gaaccccaaaaagtttatctttaaagcaaaatgattttattctgtcccta
agaagatagatcaggtgtagtggctcatgcctacagttctcacttggggg
agggaagtaagatagttctaagcctgggctacaataagaccctgcctcaa
taaatgaaagaaagtaataatttatatttaaaagaatgcttagctgggca
tgatgatggatgccctaatcctgacttagagtcagagatggcaagtcaag
gcagactggtcttgtattgtttccggcagcagggttcatgatgaacctcg
ctaaacaagcagttat
ttagctttgcacctgtcagggtgcttggtgaccataccaaacagttgaga
aatctcctcaacaatgtggggttctcatgaattccaaagcccaagcagga
accgaaagcaaaaatgtagccaaagtgctggcagaggtcactggctactg
gcttgctgaactttaacctccctccacgtaggcaccacccctagatggct
ctctttcaagggtcaaagtcatgggcagagatctggtggccaccagggca
tgtgctcactctcttgttgcaacattctgccttttgtttttgagtttgct
tggagccctaactgacctcacagtcactgtcatcctccagcctcaaccct
gcccagggaagtgctaggattacaaagtgttctctaccactcctaactac
tgctcttccacttcagcgggggtgcgggggtggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_128838469_128839253
seq2: B6Ng01-017F11.b_42_807 (reverse)

seq1  ATAACTGCTTGTTTGAGACAGAGTTTCATCATGTAGCCCTGGCTGGCACG  50
      ||||||||||||||   |  ||| ||||||||| | |||| ||||   ||
seq2  ATAACTGCTTGTTT---AGCGAGGTTCATCATG-AACCCT-GCTG--CCG  43

seq1  GAACACATTACATAGACCAGTCTGGCCTTGAACTCTGCCATCTTCTGACT  100
      ||| ||| |||| |||||||||| |||||| ||| ||||||| |||||||
seq2  GAA-ACAATACA-AGACCAGTCT-GCCTTG-ACT-TGCCATC-TCTGACT  87

seq1  CCTAAGTACAGGAATTAAGGGCATCCATCATCATGCCCAGCCTAAGCATT  150
       |||||| |||||  | ||||||||||||||||||||||| |||||||||
seq2  -CTAAGT-CAGGA--TTAGGGCATCCATCATCATGCCCAG-CTAAGCATT  132

seq1  TCTTTTTAAATATAAATTATTACTTTCTTTCATTTATTGAGGCAGGGTCT  200
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --CTTTTAAATATAAATTATTACTTTCTTTCATTTATTGAGGCAGGGTCT  180

seq1  TATTGTAGCCCAGGCTTAGAACTATCTTACTTCCCTCCCCCAAGTGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAGCCCAGGCTTAGAACTATCTTACTTCCCTCCCCCAAGTGAGAA  230

seq1  CTGTAGGCATGAGCCACTACACCTGATCTATCTTCTTAGGGACAGAAT-A  299
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGTAGGCATGAGCCACTACACCTGATCTATCTTCTTAGGGACAGAATAA  280

seq1  AATCATTTTGCTTTAAAGATAAACTTTTTGGGGTTCTTCAAGTACTCCGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTGCTTTAAAGATAAACTTTTTGGGGTTCTTCAAGTACTCCGT  330

seq1  TGTAGGGAGCAAGTCCTCAGTGAAAGTGTTCTGGTGACTTGTCACAGTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGAGCAAGTCCTCAGTGAAAGTGTTCTGGTGACTTGTCACAGTCA  380

seq1  TGTCAAGAGCCAAGGCCTCAGAACCATAGACTGGCAAAATTCTTCCTGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGAGCCAAGGCCTCAGAACCATAGACTGGCAAAATTCTTCCTGGG  430

seq1  GTGAGTGAGACTCAGAGGGATGGCAAAGCTTTCCTCTTGTCCAAGTGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGAGACTCAGAGGGATGGCAAAGCTTTCCTCTTGTCCAAGTGCCA  480

seq1  ATGTTGACAGTCTGTGCGGAAAATGGCCACTGTAGCTCCATCTCCCTGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGACAGTCTGTGCGGAAAATGGCCACTGTAGCTCCATCTCCCTGAT  530

seq1  GTTTATGGCCTGAAGATTACTTCCCTACTGAGATCTCTTCCTGGCTCAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGGCCTGAAGATTACTTCCCTACTGAGATCTCTTCCTGGCTCAGT  580

seq1  TGTATCCAATAACCTGGCCTCCTCCTTCACTGTATATAATAAACATGCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCAATAACCTGGCCTCCTCCTTCACTGTATATAATAAACATGCTG  630

seq1  AGCTTCCAAGGTGCGGCTGTTTCTCAGCTGGGAGTCCAATCCACCTGACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCAAGGTGCGGCTGTTTCTCAGCTGGGAGTCCAATCCACCTGACC  680

seq1  TTGGCTTTTTCTGTGCCTGTGTGTGTGTGTTAGTTTTTCATGCCGCTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTTTCTGTGCCTGTGTGTGTGTGTTAGTTTTTCATGCCGCTGCC  730

seq1  TATTTAGGTCAATCTCTGGAGCTGTGCAGAGAATTC  785
      ||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGTCAATCTCTGGAGCTGTGCAGAGAATTC  766

seq1: chr4_128660910_128661353
seq2: B6Ng01-017F11.g_71_514

seq1  GAATTCTTAGCTTTGCACCTGTCAGGGTGCTTGGTGACCATACCAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCTTTGCACCTGTCAGGGTGCTTGGTGACCATACCAAACAG  50

seq1  TTGAGAAATCTCCTCAACAATGTGGGGTTCTCATGAATTCCAAAGCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAATCTCCTCAACAATGTGGGGTTCTCATGAATTCCAAAGCCCAA  100

seq1  GCAGGAACCGAAAGCAAAAATGTAGCCAAAGTGCTGGCAGAGGTCACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACCGAAAGCAAAAATGTAGCCAAAGTGCTGGCAGAGGTCACTGG  150

seq1  CTACTGGCTTGCTGAACTTTAACCTCCCTCCACGTAGGCACCACCCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGCTTGCTGAACTTTAACCTCCCTCCACGTAGGCACCACCCCTAG  200

seq1  ATGGCTCTCTTTCAAGGGTCAAAGTCATGGGCAGAGATCTGGTGGCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTCTTTCAAGGGTCAAAGTCATGGGCAGAGATCTGGTGGCCACC  250

seq1  AGGGCATGTGCTCACTCTCTTGTTGCAACATTCTGCCTTTTGTTTTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATGTGCTCACTCTCTTGTTGCAACATTCTGCCTTTTGTTTTTGAG  300

seq1  TTTGCTTGGAGCCCTAACTGACCTCACAGTCACTGTCATCCTCCAGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGGAGCCCTAACTGACCTCACAGTCACTGTCATCCTCCAGCCTC  350

seq1  AACCCTGCCCAGGGAAGTGCTAGGATTACAAAGTGTTCTCTACCACTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGCCCAGGGAAGTGCTAGGATTACAAAGTGTTCTCTACCACTCCT  400

seq1  AACTACTGCTCTTCCACTTCAGCGGGGGTGCGGGGGTGGGGGGT  444
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTGCTCTTCCACTTCAGCGGGGGTGCGGGGGTGGGGGGT  444