BAC Information

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BAC

Clone NameB6Ng01-017J02
Chromosome4 (Build37)
Map Location 21,883,070 - 22,014,200
singlet/doubletdoublet
Overlap genenone
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik
Downstream geneLOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017J02.bB6Ng01-017J02.g
ACCDH851216DH851217
length1,1281,079
definitionDH851216|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J02, 5' end.DH851217|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,883,070 - 21,884,205)(22,013,122 - 22,014,200)
sequence
gaattccttccatcttagataatgagctgtctctccttctcgccatagca
ccttctttcttctaatttgcctttgaactatgatttttccaacattgacc
tcattctagaactttccttagacaatcccatttcccctcacagctttaaa
actcactaaatgtccgtgactgcccaccagttcgatctccgtgtaaagtt
taaactttcttcttgactttttcctgcttgctggacatcttctgtctttg
aaaccttcgagtacatctggctcacctacctttcattcctcaaattcatt
ctaccctttgtggtccagctctgattggtggaatccactcaaatgctcag
cctgggcgaagacccttctatcttagaagttctccatgtaccctgtgtca
cctctctgtcgtggtctacagcacatccttcctgtctgtctcactcaccc
tgtcttcctgtcagccttcctaccagcattgccataggtccgattatgaa
actttccaacatttaacctttacttttggaattaaaatgattcagcctgg
cttcaggcctcctgttattagctctatggggccgtccatctcaggtcatg
cacaattcctcacgtgcatcctaaagcccagctacactcctggagtcctt
gcaggtccaggcagccagcatcttcatgtaggtgcctcttgagctccgtc
ctgttcatcctacagttatgcccaggatctaactgggtgacacaacacat
ctccagcttagagtcacacatgcctcgtttctagaacctcctctgtgcaa
ttgttacttgtttatgcccagtttaggattactttttttctccaagactg
ttggctttcccgatcatcaaaggttacgtaacttcatttgttgtgaattg
aaattatgtgcaattagaatcacagtgctcattattctatggaatcgaaa
ctactagattatttgcaggtattataaagagggcctcctcaagagtatgt
gcattgacctttacatagaattcagtgcatgggatgtgagatagtttaca
tcaaagacccatcccgtgcactgccatgccaggtcaatattgctgggagg
tactttctattctcagcaattcgtttct
gaattccagatgcttaaacccgtagtttggtgaagaggctacaaaacttc
cccaagaaggacggagtcgggatttatgaggctatgtgcccaggagcatg
caggatgagaataggggcaggggattcctattctcccttactccttactc
ctgccagtctcaaggtgatattttggtctcaatatgagatttcccgaatt
ttgaatgattctcatcctcactcttgctccaggaccattctcccggtcac
attttcccctcaaggtatcagcctagggcctcttaagtggcaagacttgc
ttctttccttcctttttcagaccccaggaagtaaacattctattcggagc
caatattaaaatcctttcagcttgtgagttccataactgggtttgtaatc
tattcatgatgcatagtcttaatcatccacaattaacacagtaacccacc
acaccacgaccactatcccactgacatcaccaatagctccaccatgcctt
ccaaggaagaacacgtaccttgtacttccaacctatttcccctgtacaga
gacaacctgagtccccaggtcagagtcaggccatttccatcaattccagt
tggtttgtttggttggttgctttattttgtttttgcctcttgttttaacc
taaattttcccatattattccatcaattatggctccattcatctcccttc
aaaactgatgcaggattcaccctgatgttaccatgcagtggcttctgcct
ttctccaaagcagagaaatcagatgggtgtgaagaggggattgaaaccaa
gtttgctgcgtttaattctaagatctctatgggaacctctgctaacttgc
ctgatgcacacaatttcctttcttccattattctttcattataaagcatg
gaatggcctaattacatattttccctggattccctgcagtagagagcatg
tgacacaaacctgttcataacttcagccgaaaatcttggaatggaaatca
tctgggtaagattttagtttcctgataaagagaccaatgtgacggattta
atcccttccccccatctttccggtttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_21883070_21884205
seq2: B6Ng01-017J02.b_47_1174

seq1  GAATTCCTTCCATCTTAGATAATGAGCTGTCTCTCCTTCTCGCCATAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCATCTTAGATAATGAGCTGTCTCTCCTTCTCGCCATAGCA  50

seq1  CCTTCTTTCTTCTAATTTGCCTTTGAACTATGATTTTTCCAACATTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTCTTCTAATTTGCCTTTGAACTATGATTTTTCCAACATTGACC  100

seq1  TCATTCTAGAACTTTCCTTAGACAATCCCATTTCCCCTCACAGCTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTAGAACTTTCCTTAGACAATCCCATTTCCCCTCACAGCTTTAAA  150

seq1  ACTCACTAAATGTCCGTGACTGCCCACCAGTTCGATCTCCGTGTAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTAAATGTCCGTGACTGCCCACCAGTTCGATCTCCGTGTAAAGTT  200

seq1  TAAACTTTCTTCTTGACTTTTTCCTGCTTGCTGGACATCTTCTGTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTCTTCTTGACTTTTTCCTGCTTGCTGGACATCTTCTGTCTTTG  250

seq1  AAACCTTCGAGTACATCTGGCTCACCTACCTTTCATTCCTCAAATTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCGAGTACATCTGGCTCACCTACCTTTCATTCCTCAAATTCATT  300

seq1  CTACCCTTTGTGGTCCAGCTCTGATTGGTGGAATCCACTCAAATGCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTTGTGGTCCAGCTCTGATTGGTGGAATCCACTCAAATGCTCAG  350

seq1  CCTGGGCGAAGACCCTTCTATCTTAGAAGTTCTCCATGTACCCTGTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCGAAGACCCTTCTATCTTAGAAGTTCTCCATGTACCCTGTGTCA  400

seq1  CCTCTCTGTCGTGGTCTACAGCACATCCTTCCTGTCTGTCTCACTCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGTCGTGGTCTACAGCACATCCTTCCTGTCTGTCTCACTCACCC  450

seq1  TGTCTTCCTGTCAGCCTTCCTACCAGCATTGCCATAGGTCCGATTATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCTGTCAGCCTTCCTACCAGCATTGCCATAGGTCCGATTATGAA  500

seq1  ACTTTCCAACATTTAACCTTTACTTTTGGAATTAAAATGATTCAGCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCAACATTTAACCTTTACTTTTGGAATTAAAATGATTCAGCCTGG  550

seq1  CTTCAGGCCTCCTGTTATTAGCTCTATGGGGCCGTCCATCTCAGGTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCCTCCTGTTATTAGCTCTATGGGGCCGTCCATCTCAGGTCATG  600

seq1  CACAATTCCTCACGTGCATCCTAAAGCCCAGCTACACTCCTGGAGTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTCCTCACGTGCATCCTAAAGCCCAGCTACACTCCTGGAGTCCTT  650

seq1  GCAGGTCCAGGCAGCCAGCATCTTCATGTAGGTGCCTCTTGAGCTCCGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCCAGGCAGCCAGCATCTTCATGTAGGTGCCTCTTGAGCTCCGTC  700

seq1  CTGTTCATCCTACAGTTATGCCCAGGATCTAACTGGGTGACACAACACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATCCTACAGTTATGCCCAGGATCTAACTGGGTGACACAACACAT  750

seq1  CTCCAGCTTAGAGTCACACATGCCTCGTTTCTAGAACCTCCTCTGTGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTTAGAGTCACACATGCCTCGTTTCTAGAACCTCCTCTGTGCAA  800

seq1  TTGTTACTTGTTTATGCCCAGTTTAGGATTACTTTTTTTCTCCAAGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACTTGTTTATGCCCAGTTTAGGATTACTTTTTTTCTCCAAGACTG  850

seq1  TTGGCTTTCCCGATCATCAAAGGTTACGTAACTTCATTTGTTGTGAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTCCCGATCATCAAAGGTTACGTAACTTCATTTGTTGTGAATTG  900

seq1  AAATAATGTGCAATTAGAATCACAGTGCTCATTATTCTAATGGAATCGAA  950
      |||| ||||||||||||||||||||||||||||||||| ||||||||| |
seq2  AAATTATGTGCAATTAGAATCACAGTGCTCATTATTCT-ATGGAATCG-A  948

seq1  AACTACTAGATTA-TTGCAGGTATTATAAAGAGGG-CTCTCAAAGAGTAT  998
      ||||||||||||| ||||||||||||||||||||| |||   ||||||||
seq2  AACTACTAGATTATTTGCAGGTATTATAAAGAGGGCCTCCTCAAGAGTAT  998

seq1  GTGGCATTGACCTTTACATAGAATTCAGTGCAATGGATGTGAGATAGTTT  1048
      || |||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GT-GCATTGACCTTTACATAGAATTCAGTGCATGGGATGTGAGATAGTTT  1047

seq1  ACATCAAAAGACCCATCCCGTGCACTGCCCATGCACAGTCAAATATTGCT  1098
      ||||| ||||||||||||||||||||| |||||| |||   |||||||||
seq2  ACATC-AAAGACCCATCCCGTGCACTG-CCATGC-CAGGTCAATATTGCT  1094

seq1  GTGAGGTACTTTTCCTATTCTCAGCAAAATTCGTTTCT  1136
      | ||||||||||  |||||||||||  |||||||||||
seq2  GGGAGGTACTTT--CTATTCTCAGC--AATTCGTTTCT  1128

seq1: chr4_22013122_22014200
seq2: B6Ng01-017J02.g_69_1147 (reverse)

seq1  TTCAAAACAGAAAGAT-GGGGGATGGGATAAAATCAGTCACATTGGTCTC  49
      |||||| | ||||||| |||||| ||||| ||||| ||||||||||||||
seq2  TTCAAACCGGAAAGATGGGGGGAAGGGATTAAATCCGTCACATTGGTCTC  50

seq1  TTTTATCAGGAAACTAAAATCTTTCCCAGATGATCTCCATTCAAAGGATT  99
       |||||||||||||||||||||| |||||||||| ||||||| |||  ||
seq2  -TTTATCAGGAAACTAAAATCTTACCCAGATGATTTCCATTCCAAGATTT  99

seq1  TCTGCTGAACTTATTGAACAGTTTTGTGTCACATGCCTCTCTACCTGCAG  149
      || |||||| ||| ||||||| ||||||||||||| ||||||| ||||||
seq2  TCGGCTGAAGTTA-TGAACAGGTTTGTGTCACATG-CTCTCTA-CTGCAG  146

seq1  GGAATCCAGGGAAAAATATGTATTTAGG-CATTCCATGCTTTATAATGAA  198
      ||||||||||| |||||||||| ||||| |||||||||||||||||||||
seq2  GGAATCCAGGG-AAAATATGTAATTAGGCCATTCCATGCTTTATAATGAA  195

seq1  AGAATAATGGAAGAAAGG-AATTGTGTGCATCAGGC-AGTTAGCAGGGGT  246
      |||||||||||||||||| ||||||||||||||||| ||||||||| |||
seq2  AGAATAATGGAAGAAAGGAAATTGTGTGCATCAGGCAAGTTAGCAGAGGT  245

seq1  TCCCATAGGGATCTTAGAATTAAACGCAGC-AACTTGGTTTCAATCCCCT  295
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  TCCCATAGAGATCTTAGAATTAAACGCAGCAAACTTGGTTTCAATCCCCT  295

seq1  CTTCACACCCATCTGATTTCTCTGCTTTGGAGAAAGGCAGAAGCCACTGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACCCATCTGATTTCTCTGCTTTGGAGAAAGGCAGAAGCCACTGC  345

seq1  ATGGTAACATCAGGGTGAATCCTGCATCAGTTTTGAAGGGAGATGAATGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAACATCAGGGTGAATCCTGCATCAGTTTTGAAGGGAGATGAATGG  395

seq1  AGCCATAATTGATGGAATAATATGGGAAAATTTAGGTTAAAACAAGAGGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAATTGATGGAATAATATGGGAAAATTTAGGTTAAAACAAGAGGC  445

seq1  AAAAACAAAATAAAGCAACCAACCAAACAAACCAACTGGAATTGATGGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAATAAAGCAACCAACCAAACAAACCAACTGGAATTGATGGAA  495

seq1  ATGGCCTGACTCTGACCTGGGGACTCAGGTTGTCTCTGTACAGGGGAAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTGACTCTGACCTGGGGACTCAGGTTGTCTCTGTACAGGGGAAAT  545

seq1  AGGTTGGAAGTACAAGGTACGTGTTCTTCCTTGGAAGGCATGGTGGAGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGAAGTACAAGGTACGTGTTCTTCCTTGGAAGGCATGGTGGAGCT  595

seq1  ATTGGTGATGTCAGTGGGATAGTGGTCGTGGTGTGGTGGGTTACTGTGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGATGTCAGTGGGATAGTGGTCGTGGTGTGGTGGGTTACTGTGTT  645

seq1  AATTGTGGATGATTAAGACTATGCATCATGAATAGATTACAAACCCAGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGATGATTAAGACTATGCATCATGAATAGATTACAAACCCAGTT  695

seq1  ATGGAACTCACAAGCTGAAAGGATTTTAATATTGGCTCCGAATAGAATGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTCACAAGCTGAAAGGATTTTAATATTGGCTCCGAATAGAATGT  745

seq1  TTACTTCCTGGGGTCTGAAAAAGGAAGGAAAGAAGCAAGTCTTGCCACTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCTGGGGTCTGAAAAAGGAAGGAAAGAAGCAAGTCTTGCCACTT  795

seq1  AAGAGGCCCTAGGCTGATACCTTGAGGGGAAAATGTGACCGGGAGAATGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCCCTAGGCTGATACCTTGAGGGGAAAATGTGACCGGGAGAATGG  845

seq1  TCCTGGAGCAAGAGTGAGGATGAGAATCATTCAAAATTCGGGAAATCTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGCAAGAGTGAGGATGAGAATCATTCAAAATTCGGGAAATCTCA  895

seq1  TATTGAGACCAAAATATCACCTTGAGACTGGCAGGAGTAAGGAGTAAGGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGACCAAAATATCACCTTGAGACTGGCAGGAGTAAGGAGTAAGGG  945

seq1  AGAATAGGAATCCCCTGCCCCTATTCTCATCCTGCATGCTCCTGGGCACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGGAATCCCCTGCCCCTATTCTCATCCTGCATGCTCCTGGGCACA  995

seq1  TAGCCTCATAAATCCCGACTCCGTCCTTCTTGGGGAAGTTTTGTAGCCTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCATAAATCCCGACTCCGTCCTTCTTGGGGAAGTTTTGTAGCCTC  1045

seq1  TTCACCAAACTACGGGTTTAAGCATCTGGAATTC  1079
      ||||||||||||||||||||||||||||||||||
seq2  TTCACCAAACTACGGGTTTAAGCATCTGGAATTC  1079