BAC Information

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BAC

Clone NameB6Ng01-017N22
Chromosome4 (Build37)8 (Build37)
Map Location 8,331,171 - 8,331,69540,168,455 - 40,168,624
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCar8, LOC100039494, LOC100039505
Downstream geneLOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017N22.bB6Ng01-017N22.g
ACCDH851423DH851424
length646170
definitionDH851423|Mus musculus domesticus DNA, BAC clone: B6Ng01-017N22, 5' end.DH851424|Mus musculus domesticus DNA, BAC clone: B6Ng01-017N22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,331,171 - 8,331,695)(40,168,455 - 40,168,624)
sequence
gaattcctgatctttccatgacttttatcatgaataggtgttggattttg
ttgaatgctttctctgcgtctgagatgatcatgtggtttttgactttgag
tttgtttatataatagattatgttgatggatttctgtatattaaaccatc
cctgcatccctggaataaaacctacttggtcaggatggatgattattttg
acgtgttcttggattcggttagcgagaactttattgaggatttttgaaac
gatattcataagggaaattggtctgaaatcctttatctttgttggatctt
tctgtggtttcggtatcagagtaattgtggcttcatagaatgagttgggt
agagtaccttctacttctattttgtggaacagtttgtgaagaactggaat
tagatcttctttgaaggtctgatagaactctgtactaaacccatctggtc
ctgggctttttttttttttgggagactattaatgactgcttctatttttt
gtatgggatatgggactgtttagatcattaacttgatcctgatttaactt
tggtacctggtatctgtccagaaatttgtccatttcttccaggttttcca
gttttattgagtataggatctgtagaaggatctgatggtgttttgg
aagggcagggaggcaggagtgggtgggtaggggaacaccctcatagaagc
agggggatggggtatggaataagaggcttctggaggggaaactggaaagg
agtttataaactcctgtttgaaactgaaataaataaaataaccaataaaa
catttaaaaagtaaaagttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8331171_8331695
seq2: B6Ng01-017N22.b_164_689 (reverse)

seq1  CCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGG  50
      ||||||||||||||||||||||||| | |  |||||||||| ||||||||
seq2  CCAAAACACCATCAGATCCTTCTAC-AGATCCTATACTCAATAAAACTGG  49

seq1  AAAACCTGGACTAAATGGACAAATTTCTAGACAGATACCAGGTACCAAAG  100
      ||||||||||  |||||||||||||||| |||||||||||||||||||||
seq2  AAAACCTGGAAGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAG  99

seq1  TTAAATCAGGATCAAGTTAATGATCTAAACAGTCCCATATCCCCTA-AAG  149
      ||||||||||||||||||||||||||||||||||||||||||| || || 
seq2  TTAAATCAGGATCAAGTTAATGATCTAAACAGTCCCATATCCCATACAAA  149

seq1  AAATAGAAGCAGTCATTAATAGTCTCCC-AGCCAAAAAAAAGCCCAGGAC  198
      |||||||||||||||||||||||||||| |   |||||||||||||||||
seq2  AAATAGAAGCAGTCATTAATAGTCTCCCAAAAAAAAAAAAAGCCCAGGAC  199

seq1  CAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATT  248
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGATGGGTTTAGTACAGAGTTCTATCAGACCTTCAAAGAAGATCTAATT  249

seq1  CCAGTTCTGCACAAACTATTCCACAAAATAGAAGAAGAAGGTACTCTACC  298
      |||||||| |||||||| |||||||||||||||| |||||||||||||||
seq2  CCAGTTCTTCACAAACTGTTCCACAAAATAGAAGTAGAAGGTACTCTACC  299

seq1  CAACTCATTCTATGAAGCTACAATTACTCTGATACCTAAACCACAGAAAG  348
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  CAACTCATTCTATGAAGCCACAATTACTCTGATACCGAAACCACAGAAAG  349

seq1  ATCCAACAAAGATAGAGATCTTCAGACCAATTTCCCTTATGAATATCGAT  398
      |||||||||||||| ||   |||||||||||||||||||||||||||| |
seq2  ATCCAACAAAGATAAAGGATTTCAGACCAATTTCCCTTATGAATATCGTT  399

seq1  GCAAAAATACTCAATAAAATTCTCGCTAACCGAACCCAAGAAAACATTAA  448
       ||||||| ||||||||| ||||||||||||||| ||||||| || | ||
seq2  TCAAAAATCCTCAATAAAGTTCTCGCTAACCGAATCCAAGAACACGTCAA  449

seq1  AGCAATCATCCATCATGACCAAGTAGGTTTTATTCCAGGGATTCAGGGAT  498
      |  ||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  AATAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGAT  499

seq1  GGTTTAATGTACGGAAATCCATCACCA  525
      |||||||| ||| ||||||||||| ||
seq2  GGTTTAATATACAGAAATCCATCAACA  526

seq1: chr8_40168455_40168624
seq2: B6Ng01-017N22.g_74_243 (reverse)

seq1  CAACTTTTACTTTTTAAATGTTTTATTGGTTATTTTATTTATTTCAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTACTTTTTAAATGTTTTATTGGTTATTTTATTTATTTCAGTTT  50

seq1  CAAACAGGAGTTTATAAACTCCTTTCCAGTTTCCCCTCCAGAAGCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGAGTTTATAAACTCCTTTCCAGTTTCCCCTCCAGAAGCCTCTT  100

seq1  ATTCCATACCCCATCCCCCTGCTTCTATGAGGGTGTTCCCCTACCCACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATACCCCATCCCCCTGCTTCTATGAGGGTGTTCCCCTACCCACCC  150

seq1  ACTCCTGCCTCCCTGCCCTT  170
      ||||||||||||||||||||
seq2  ACTCCTGCCTCCCTGCCCTT  170