BAC Information

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BAC

Clone NameB6Ng01-017O16
Chromosome4 (Build37)
Map Location 66,915,141 - 66,915,967
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017O16.bB6Ng01-017O16.g
ACCDH851459DH851460
length1,133860
definitionDH851459|Mus musculus domesticus DNA, BAC clone: B6Ng01-017O16, 5' end.DH851460|Mus musculus domesticus DNA, BAC clone: B6Ng01-017O16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtaaccaacatcaaagtaaatggtgagaagctggaagcaaccccactgaa
atcagggactagacaagactgcctactttctccctacctattcaacattg
tacttaaagtcctagccagagaaattcgacaacaaaaggagatcaagggg
atataaactggaaaggaagaagtcaaaatatcccattttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaaaatttcaatgaagtatctggatataaaattaactcaaacaagt
caacgggctttctctacccaaaggataaacaggctgagaaagaaattagt
gaatcaacacccttctcaatagtcacaaataatatacaataacttggtgt
gactctaactaagtaagtgaaagatatgtatgagaagaacttcaagactc
tgaagaaagaaactaaagaagatctcaggagatggaaagatctcccatgc
tcatggattggcaggatcaatatagtaataatggctatcttgccaaaagc
aatctacacattcaatgcaatccccatcaaaattccaactcaattcttca
acgaattagaaagggcaatttccaaattcatctggaataacaaaaaacct
agcgtagaaaaactcttctcaaggataaaagaacctctggtggaaacacc
atgcctgacctaaagctatattacagagcaattgtgataaaaaaaaactg
catggtactggtacagtgactgacaagtagaccaatggaatagaattgaa
cccccagaaatgaacccacacacctgtggtcacttgatctttgacaaggg
tgctaaaactatccagtggaataaaacagaattttcaaaaatggtgctgg
cacaactggtggtatcatgcagaagaatgtgaatttgattcattcctatc
accttgtactagtcaattctaagttgataggaacttcccataaaccagag
acactgaaacttatagagaagaagtgggtaaagcttgagtgttgcacaga
agaaaattctgaataaaacagcatggctgtctg
gaattccacattgttttctacagtggctgaaaactgtttgcaatttcata
agcctcaaggggtcatatttctcctcatattcactgtattttattattat
ttgatttctggaggatagatattctgactggggtgagagaatatcaaggt
gattttaatttgcattcccatcacagctaaaaatcttgagtagaaatatt
tctttttttgaaaattatctgtccacatctttatccctattttgattgtg
tttgttttttttttatttttttagttccttgtatattattgcttctttat
tcaatgtagaactgtcagcttttctaccattatgtagaacctttttttaa
accaaatttactatttctttcgttatgtaaaagattttagttttatgagt
tcccatttaccacatgctagccttccttcatgtgtgactgagtcccattt
agaaagtccttacttatgtctatatattgcaccatatttcctaattctct
tctcatagaagttttaggatttgggcttgaaatacctttttcattatctc
agtgacatgagcagaaagaaacttgttcaattttgctttccttttctaaa
gtaacatttgtgatgctcaccattccataaaatgtcacttgtatcttaca
ggtatcatcatgagtctgtacttcagtgtggaactctgggctggaggtgg
ctggaggccttgtttagcataaaattaacacttgaagacaggaggtggga
aaatgattttagctagaaccacaaggcacacttcatggatatcaatatta
agtgcaaaatgaatgaatgtttactgtccaaagagaacccagaggtacct
tctctcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66915141_66915967
seq2: B6Ng01-017O16.g_99_929

seq1  AAAACTGTTTGCAATTTCATAAGCCTCAAGGGGTCATATTTCTCCTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTTTGCAATTTCATAAGCCTCAAGGGGTCATATTTCTCCTCATA  50

seq1  TTCACTGTATTTTATTATTATTTGATTTCTGGAGGATAGATATTCTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTATTTTATTATTATTTGATTTCTGGAGGATAGATATTCTGACT  100

seq1  GGGGTGAGAGAATATCAAGGTGATTTTAATTTGCATTCCCATCACAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGAGAATATCAAGGTGATTTTAATTTGCATTCCCATCACAGCTA  150

seq1  AAAATCTTGAGTAGAAATATTTCTTTTTTTGAAAATTATCTGTCCACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTGAGTAGAAATATTTCTTTTTTTGAAAATTATCTGTCCACATC  200

seq1  TTTATCCCTATTTTGATTGTGTTTGTTTTTTTTTTATTTTTTTAGTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCCTATTTTGATTGTGTTTGTTTTTTTTTTATTTTTTTAGTTCCT  250

seq1  TGTATATTATTGCTTCTTTATTCAATGTAGAACTGTCAGCTTTTCTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTATTGCTTCTTTATTCAATGTAGAACTGTCAGCTTTTCTACCA  300

seq1  TTATGTAGAACCTTTTTTTAAACCAAATTTACTATTTCTTTCGTTATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGAACCTTTTTTTAAACCAAATTTACTATTTCTTTCGTTATGTA  350

seq1  AAAGATTTTAGTTTTATGAGTTCCCATTTACCACATGCTAGCCTTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTAGTTTTATGAGTTCCCATTTACCACATGCTAGCCTTCCTTC  400

seq1  ATGTGTGACTGAGTCCCATTTAGAAAGTCCTTACTTATGTCTATATATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGACTGAGTCCCATTTAGAAAGTCCTTACTTATGTCTATATATTG  450

seq1  CACCATATTTCCTAATTCTCTTCTCATAGAAGTTTTAGGATTTGGGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATATTTCCTAATTCTCTTCTCATAGAAGTTTTAGGATTTGGGCTTG  500

seq1  AAATACCTTTTTCATTATCTCAGTGACATGAGCAGAAAGAAACTTGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTTTTTCATTATCTCAGTGACATGAGCAGAAAGAAACTTGTTCA  550

seq1  ATTTTGCTTTCCTTTTCTAAAGTAACATTTGTGATGCTCACCATTCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTTCCTTTTCTAAAGTAACATTTGTGATGCTCACCATTCCATA  600

seq1  AAATGTCACTTGTATCTTACAGGTATCATCATGAGTCTGTACTTCAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCACTTGTATCTTACAGGTATCATCATGAGTCTGTACTTCAGTGT  650

seq1  GGAACTCTGGGCTGGAGGTGGCTGGAGGCC-TGTTTAGCATAAAATTAAC  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAACTCTGGGCTGGAGGTGGCTGGAGGCCTTGTTTAGCATAAAATTAAC  700

seq1  ACTTGAAGACAGGAGGTGGGAAAATGA-TTTAGCTAGAACCACAAGGCAC  748
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTTGAAGACAGGAGGTGGGAAAATGATTTTAGCTAGAACCACAAGGCAC  750

seq1  AC-TCATGGATATCAA-ATTAAGTGCAAAATGAATGAATGTTTAACTGCC  796
      || ||||||||||||| |||||||||||||||||||||||||| |||| |
seq2  ACTTCATGGATATCAATATTAAGTGCAAAATGAATGAATGTTT-ACTGTC  799

seq1  CAAAGAGAACCCAGAGGTACC-TCTCTCATTT  827
      ||||||||||||||||||||| ||||||||||
seq2  CAAAGAGAACCCAGAGGTACCTTCTCTCATTT  831