BAC Information

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BAC

Clone NameB6Ng01-017P02
Chromosome4 (Build37)
Map Location 76,002,527 - 76,098,139
singlet/doubletdoublet
Overlap genePtprd
Upstream geneLOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017P02.bB6Ng01-017P02.g
ACCDH851479DH851480
length1,154329
definitionDH851479|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P02, 5' end.DH851480|Mus musculus domesticus DNA, BAC clone: B6Ng01-017P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,002,527 - 76,003,673)(76,097,811 - 76,098,139)
sequence
acagggaaggaaacaagaagcaggagctgatgaagaggccatggagaaat
attgcttattggcttactctgcctaacttcttatagaaaccaggactacc
aggccaggatggcaccactcagaatgagctgggccatttcccgtatatca
ctaatttaataaaagactcctgtacagcaaaattttatggaggcattttc
ttaattaagcttgcctcctatccaatgactctaacttgtgccaagttgat
ataaaactatgcaaaaacacacacacacccacacacaccaccaccaccaa
caccaccaccaacaacagtaatgatgacaattaaaggaaaaaagaggcta
tgagtttgaaagagaacaaggaggggtaaatgagagggtttgaatggaag
aaaacgaaaaagaaaatgatgtaattgtattataatatcaaaaattaaaa
ggattaaagaaactgaaatatgcccagttaaaaatgaaaaatgatacaac
caccaaatctatattacaacatactgctgcttacaagactttattatttt
tctctcactaatggagatttaaaggtaaaatctaagaacttttattaaaa
ggaaaatgattaaaatattcatgcaattacagtttgtaatgataatagaa
acaaaagaacctcgcattccttttaaggcatatggaagctgacattaaag
gaatcaaacagttgttgaatggtatgcaagagactaatactttaatgcac
aattcagtctaatagtgctctgcaatactttaacataactatgatttgta
accacacctcagaggtattggtgcaaacaggcatgggaaaaggttgcttc
aaaagaaaccactttatttttgtgttaatatagttccaactgttttcaat
gatttatgaatccaccgagatatattatgtgatcactgaaatattaaaca
tatttaaacggtgtaatatcaatatgaaatattaaggctaccagtcattt
tgtataacatctaagttgttaaaacccattacatctctgctatctaggaa
tttgtttgaaatccctcagccactgcttcccctaactcattccaattaat
tccagattttgatcgcgccttccctcgggaatatttctattatggaaaca
ttag
tgtagctagcctaacttactcctagtgggagaagagagtacccagactgt
gaacccagagtagtcaggcttcactgctatgctcttctcagcaaggtcag
atgtggaggcagaaggcatcttgcctttccagtacccagaggaggtattt
ccaacatctgaaggagagaagtagagccactagttcatgagggagggagg
gaggatgtggcaatgagaaagacaatctagtttatatactggtggagagt
gatttatcactaagcccagatttctagattaactctgagggcagaagtaa
cagcagttcatagtctctgctcaagcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76002527_76003673
seq2: B6Ng01-017P02.b_51_1204

seq1  ACAGGGAAGGAAACAAGAAGCAGGAGCTGATGAAGAGGCCATGGAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAGGAAACAAGAAGCAGGAGCTGATGAAGAGGCCATGGAGAAAT  50

seq1  ATTGCTTATTGGCTTACTCTGCCTAACTTCTTATAGAAACCAGGACTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTATTGGCTTACTCTGCCTAACTTCTTATAGAAACCAGGACTACC  100

seq1  AGGCCAGGATGGCACCACTCAGAATGAGCTGGGCCATTTCCCGTATATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGATGGCACCACTCAGAATGAGCTGGGCCATTTCCCGTATATCA  150

seq1  CTAATTTAATAAAAGACTCCTGTACAGCAAAATTTTATGGAGGCATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTAATAAAAGACTCCTGTACAGCAAAATTTTATGGAGGCATTTTC  200

seq1  TTAATTAAGCTTGCCTCCTATCCAATGACTCTAACTTGTGCCAAGTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAGCTTGCCTCCTATCCAATGACTCTAACTTGTGCCAAGTTGAT  250

seq1  ATAAAACTATGCAAAAACACACACACACCCACACACACCACCACCACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTATGCAAAAACACACACACACCCACACACACCACCACCACCAA  300

seq1  CACCACCACCAACAACAGTAATGATGACAATTAAAGGAAAAAAGAGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACCAACAACAGTAATGATGACAATTAAAGGAAAAAAGAGGCTA  350

seq1  TGAGTTTGAAAGAGAACAAGGAGGGGTAAATGAGAGGGTTTGAATGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGAAAGAGAACAAGGAGGGGTAAATGAGAGGGTTTGAATGGAAG  400

seq1  AAAACGAAAAAGAAAATGATGTAATTGTATTATAATATCAAAAATTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGAAAAAGAAAATGATGTAATTGTATTATAATATCAAAAATTAAAA  450

seq1  GGATTAAAGAAACTGAAATATGCCCAGTTAAAAATGAAAAATGATACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGAAACTGAAATATGCCCAGTTAAAAATGAAAAATGATACAAC  500

seq1  CACCAAATCTATATTACAACATACTGCTGCTTACAAGACTTTATTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAATCTATATTACAACATACTGCTGCTTACAAGACTTTATTATTTT  550

seq1  TCTCTCACTAATGGAGATTTAAAGGTAAAATCTAAGAACTTTTATTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACTAATGGAGATTTAAAGGTAAAATCTAAGAACTTTTATTAAAA  600

seq1  GGAAAATGATTAAAATATTCATGCAATTACAGTTTGTAATGATAATAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGATTAAAATATTCATGCAATTACAGTTTGTAATGATAATAGAA  650

seq1  ACAAAAGAACCTCGCATTCCTTTTAAGGCATATGGAAGCTGACATTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAACCTCGCATTCCTTTTAAGGCATATGGAAGCTGACATTAAAG  700

seq1  GAATCAAACAGTTGTTGAATGGTATGCAAGAGACTAATACTTTAATGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAACAGTTGTTGAATGGTATGCAAGAGACTAATACTTTAATGCAC  750

seq1  AATTCAGTCTAATAGTGCTCTGCAATACTTTAACATAACTATGATTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTCTAATAGTGCTCTGCAATACTTTAACATAACTATGATTTGTA  800

seq1  ACCACACCTCAGAGGTATTGGTGCAAACAGGCATGGGAAAAGGTTGCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACCTCAGAGGTATTGGTGCAAACAGGCATGGGAAAAGGTTGCTTC  850

seq1  AAAAGAAACCACTTTATTTTTGTGTTAATATAGTTCCAACTGTTTTCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACCACTTTATTTTTGTGTTAATATAGTTCCAACTGTTTTCAAT  900

seq1  GATTTATGAATCACCAGAGAATATATTATGTGATCACTGAAATATTAAAC  950
      ||||||||||||  | ||| ||||||||||||||||||||||||||||||
seq2  GATTTATGAATCCACCGAG-ATATATTATGTGATCACTGAAATATTAAAC  949

seq1  ATATTTAAAC-GTGTAATATCAATATGAAATTATTAAAGCTACCAAGTCA  999
      |||||||||| ||||||||||||||||||| |||||| |||||| |||||
seq2  ATATTTAAACGGTGTAATATCAATATGAAA-TATTAAGGCTACC-AGTCA  997

seq1  TTTATGTTATAACATCTAAG-TGTTAAAACACA-TACATCTCTGC-ATCT  1046
      ||| || ||||||||||||| ||||||||| || ||||||||||| ||||
seq2  TTT-TG-TATAACATCTAAGTTGTTAAAACCCATTACATCTCTGCTATCT  1045

seq1  AGG-ATTTGTTTGAATTCACTCAG-CACTTCTT-CCCTAACTCATTCACA  1093
      ||| ||||||||||| || ||||| |||| ||| ||||||||||||| ||
seq2  AGGAATTTGTTTGAAATCCCTCAGCCACTGCTTCCCCTAACTCATTC-CA  1094

seq1  ATTTATTCATG--TTTGTTCG-GC--TTCCTC-GGAATATTTCTATTATG  1137
      ||| ||||  |  |||| ||| ||  | |||| |||||||||||||||||
seq2  ATTAATTCCAGATTTTGATCGCGCCTTCCCTCGGGAATATTTCTATTATG  1144

seq1  GAAATATTAG  1147
      |||| |||||
seq2  GAAACATTAG  1154

seq1: chr4_76097811_76098139
seq2: B6Ng01-017P02.g_74_402 (reverse)

seq1  AAAGCTTGAGCAGAGACTATGAACTGCTGTTACTTCTGCCCTCAGAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGAGCAGAGACTATGAACTGCTGTTACTTCTGCCCTCAGAGTTA  50

seq1  ATCTAGAAATCTGGGCTTAGTGATAAATCACTCTCCACCAGTATATAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAAATCTGGGCTTAGTGATAAATCACTCTCCACCAGTATATAAAC  100

seq1  TAGATTGTCTTTCTCATTGCCACATCCTCCCTCCCTCCCTCATGAACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGTCTTTCTCATTGCCACATCCTCCCTCCCTCCCTCATGAACTAG  150

seq1  TGGCTCTACTTCTCTCCTTCAGATGTTGGAAATACCTCCTCTGGGTACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTACTTCTCTCCTTCAGATGTTGGAAATACCTCCTCTGGGTACTG  200

seq1  GAAAGGCAAGATGCCTTCTGCCTCCACATCTGACCTTGCTGAGAAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCAAGATGCCTTCTGCCTCCACATCTGACCTTGCTGAGAAGAGCA  250

seq1  TAGCAGTGAAGCCTGACTACTCTGGGTTCACAGTCTGGGTACTCTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTGAAGCCTGACTACTCTGGGTTCACAGTCTGGGTACTCTCTTCT  300

seq1  CCCACTAGGAGTAAGTTAGGCTAGCTACA  329
      |||||||||||||||||||||||||||||
seq2  CCCACTAGGAGTAAGTTAGGCTAGCTACA  329