BAC Information

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BAC

Clone NameB6Ng01-018B04
Chromosome4 (Build37)6 (Build37)
Map Location 37,541,407 - 37,541,7549,768,943 - 9,769,993
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC277771, LOC100039448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018B04.bB6Ng01-018B04.g
ACCDH851574DH851575
length8911,035
definitionDH851574|Mus musculus domesticus DNA, BAC clone: B6Ng01-018B04, 5' end.DH851575|Mus musculus domesticus DNA, BAC clone: B6Ng01-018B04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,541,407 - 37,541,754)(9,768,943 - 9,769,993)
sequence
gaattcagtctagacttttaaaaattatgcttccaaatatttgagaaaat
tgagacaactcaaagaatacagtaaccatgcacaattattctgtagattt
gttgctatggtatttaagaacacttacagctcaatattatgcaataaacc
aattataaaacattagtttctaaaagtgatcatcacccatataaacagaa
aaaggaactggataaaccaaaccatgaaaaaacccacaccaaaagtcctc
atatatgcagcaacttaagttagtaatgaaaatgatttggtaagtgaaac
aatatatctcaaaggatgttataatatatttaaatatttcaagaattatg
aaagtaatacaggtaaaagattaatagttggacagatggtggaacaaaag
cagctaaaggacgatatcttaaaagatctttaatatataaatgaagacca
aagtgtggatactgtgccccttcttagaattgggaaaaaaacacccatgg
aaggagttacagagacaaagtttggagctgtgacaaaagggtggaccatc
tagagactgccatatctagggatccaccccataatcagcttccaaacgct
gacaccattgcatacactagcaagattttgctgaaaggacccagatatag
atgtcttttgtgatactatgccggggcctagcaaacacagaagtggatgc
tcacagtcagctattggatggatcacagtgttcccaatggaggagctaga
gaaagtacccaaggagctaaagggacctgcaatcttatagatggaacaac
aatatgaactaaccagtaccctggagctcttgactctagctacatatgta
tcaaaagatggcctagtcggccatcactggaaagagaggcc
gaattccttgaaatattaatcttttattcgtttatccttcctttcaggaa
catttgtaagacatatatgcttgaagttataatatgaatttcaaaaacag
ttcttttgttcatttttaattttctgtttgagaacattattttgctatat
catcaactttaaaatattactaggattaccctaataattatttagtgatt
accccgctgcaaatattagtttagaggaattttcttcatttaagcttttg
tttgaggaggcttttcttctacaattttttttttatatttcaattttttc
tatataatctttatttcaagatatatttaaaactcctttgtgtttgtttt
tcctcataatggtatgtatgttcatatagagtaacattttgtttcttttc
atgacacacaactatctcctggattctatgtatctatattttatccttcc
ttggtactaattaccattgtcttgttttaactcagttaatgttctagatt
aataaatttgaaagactttgaattttgtattttaaacatcaaaggtctgg
aataaagaaggatttaagatattttatctagaaattttgattttaaattt
cacactgaaaaatctataggttaaataaagacaaaatattggtgcagtgg
tagcatacaagccttacaaagacactggttctttgtttcatatctaggtg
tacaaaacctggtaaatatagcagaaacttgtgtggaactgaagttcatt
cagggcaaataaattgagggaaaatttgaagaaaagattcataatttaga
aatacccactaagaacaaagatagtataagtcagtataagtcattgaggc
agatgagcagataacatgaagaatgaaaatgaaggacatggaaagtcaca
tttactttctacaattatcttttaaagtataaaatatatatatcctctgt
ttagatattattattccatgtttttataatttatatgtttaaataattat
tatggacttatatgtatttatttactattttagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_37541407_37541754
seq2: B6Ng01-018B04.b_589_934 (reverse)

seq1  GGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTGCTGCTACATATGC  50
      |||||||||||||| |||||||||||||||||||||  || |||||||| 
seq2  GGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGT  50

seq1  AGCTAGAGACACGAGCTCCTGGGGGTACTGGTTAGTTCATATTGTTGTTC  100
      |||||||| || |||||||   ||||||||||||||||||||||||||||
seq2  AGCTAGAGTCAAGAGCTCC--AGGGTACTGGTTAGTTCATATTGTTGTTC  98

seq1  CACCTATAGTGTTGCAGACCCCATTAGCTCCTTGGGTACTTTCTCTAGCT  150
      || |||||   ||||||  ||| |||||||||||||||||||||||||||
seq2  CATCTATAAGATTGCAGGTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCT  148

seq1  CCTAAATTGGGGGCCCTGTGATCCAACCAATAGCTGACTGTGAGCATCCA  200
      |||  ||||||  | |||||||||| ||||||||||||||||||||||||
seq2  CCTCCATTGGGAACACTGTGATCCATCCAATAGCTGACTGTGAGCATCCA  198

seq1  CTTCTGTGTTTGCTAGGCCCCAGCATAGTTTCACAAGAGACAACTTTATC  250
      ||||||||||||||||||||| ||||||| |||||| ||||| || ||||
seq2  CTTCTGTGTTTGCTAGGCCCCGGCATAGTATCACAAAAGACATCTATATC  248

seq1  AGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTT  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTT  298

seq1  GGAGGCTAATTATGGGATGGATCCCTGGATATGGCAGTCTCTAGATGG  348
      ||| ||| |||||||| ||||||||| |||||||||||||||||||||
seq2  GGAAGCTGATTATGGGGTGGATCCCTAGATATGGCAGTCTCTAGATGG  346

seq1: chr6_9768943_9769993
seq2: B6Ng01-018B04.g_69_1103

seq1  GAATTCCTTGAAATATTAATCTTTTATTCGTTTATCCTTCCTTTCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAAATATTAATCTTTTATTCGTTTATCCTTCCTTTCAGGAA  50

seq1  CATTTGTAAGACATATATGCTTGAAGTTATAATATGAATTTCAAAAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAAGACATATATGCTTGAAGTTATAATATGAATTTCAAAAACAG  100

seq1  TTCTTTTGTTCATTTTTAATTTTCTGTTTGAGAACATTATTTTGCTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGTTCATTTTTAATTTTCTGTTTGAGAACATTATTTTGCTATAT  150

seq1  CATCAACTTTAAAATATTACTAGGATTACCCTAATAATTATTTAGTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTTTAAAATATTACTAGGATTACCCTAATAATTATTTAGTGATT  200

seq1  ACCCCGCTGCAAATATTAGTTTAGAGGAATTTTCTTCATTTAAGCTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGCTGCAAATATTAGTTTAGAGGAATTTTCTTCATTTAAGCTTTTG  250

seq1  TTTGAGGAGGCTTTTCTTCTACAATTTTTTTTTTATATTTCAATTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAGGCTTTTCTTCTACAATTTTTTTTTTATATTTCAATTTTTTC  300

seq1  TATATAATCTTTATTTCAAGATATATTTAAAACTCCTTTGTGTTTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATCTTTATTTCAAGATATATTTAAAACTCCTTTGTGTTTGTTTT  350

seq1  TCCTCATAATGGTATGTATGTTCATATAGAGTAACATTTTGTTTCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATAATGGTATGTATGTTCATATAGAGTAACATTTTGTTTCTTTTC  400

seq1  ATGACACACAACTATCTCCTGGATTCTATGTATCTATATTTTATCCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACACAACTATCTCCTGGATTCTATGTATCTATATTTTATCCTTCC  450

seq1  TTGGTACTAATTACCATTGTCTTGTTTTAACTCAGTTAATGTTCTAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACTAATTACCATTGTCTTGTTTTAACTCAGTTAATGTTCTAGATT  500

seq1  AATAAATTTGAAAGACTTTGAATTTTGTATTTTAAACATCAAAGGTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTGAAAGACTTTGAATTTTGTATTTTAAACATCAAAGGTCTGG  550

seq1  AATAAAGAAGGATTTAAGATATTTTATCTAGAAATTTTGATTTTAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAGGATTTAAGATATTTTATCTAGAAATTTTGATTTTAAATTT  600

seq1  CACACTGAAAAATCTATAGGTTAAATAAAGACAAAATATTGGTGCAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGAAAAATCTATAGGTTAAATAAAGACAAAATATTGGTGCAGTGG  650

seq1  TAGCATACAAGCCTTACAAAGACACTGGTTCTTTGTTTCATATCTAGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATACAAGCCTTACAAAGACACTGGTTCTTTGTTTCATATCTAGGTG  700

seq1  TACAAAACCTGGTAAATATAGCAGAAACTTGTGTGGAACTGAAGTTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACCTGGTAAATATAGCAGAAACTTGTGTGGAACTGAAGTTCATT  750

seq1  CAAGGCAAATAAATTGAGGGAAAATTTGAAGAAAAGATTCATAATTTAGA  800
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAAATAAATTGAGGGAAAATTTGAAGAAAAGATTCATAATTTAGA  800

seq1  AATACCCACTAAGAACAAAGATAGTATAAGTCAGTATAAGTCACTGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATACCCACTAAGAACAAAGATAGTATAAGTCAGTATAAGTCATTGAGGC  850

seq1  AGATGAGCAGAATAACATGAAGAATGAAAATGAAGGACATGGAAAAGTCA  900
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  AGATGAGCAG-ATAACATGAAGAATGAAAATGAAGGACATGG-AAAGTCA  898

seq1  CATTTACTTTCTACAATTATCTTTTAAAGTATAAAATTATATATTATCCT  950
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  CATTTACTTTCTACAATTATCTTTTAAAGTATAAAA-TATATA-TATCCT  946

seq1  CTGTTTAGATATTTATTATTTCCATGTTTTTCTATAATTTTATATGTTTT  1000
      ||||||||||| |||||| |||||||||||  ||||| |||||||| |||
seq2  CTGTTTAGATA-TTATTA-TTCCATGTTTT--TATAA-TTTATATG-TTT  990

seq1  ATATAATTATTTATTGGACTTATTATGTATTTTAATTTTACTATTTTAGA  1050
      | |||||||||   |||||||| |||||||||    ||||||||||||||
seq2  AAATAATTATT--ATGGACTTA-TATGTATTT---ATTTACTATTTTAGA  1034

seq1  A  1051
      |
seq2  A  1035