BAC Information

Click to search

BAC

Clone NameB6Ng01-018L04
Chromosome4 (Build37)
Map Location 75,006,077 - 75,007,302
singlet/doubletsinglet
Overlap genenone
Upstream geneJmjd2c, LOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529
Downstream geneLOC100039833, LOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018L04.bB6Ng01-018L04.g
ACCDH852025DH852026
length1,2001,162
definitionDH852025|Mus musculus domesticus DNA, BAC clone: B6Ng01-018L04, 5' end.DH852026|Mus musculus domesticus DNA, BAC clone: B6Ng01-018L04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaataattttctttgcagaatttagaaaacaagtatgcacatttc
taactggatacacagaaatttgaagattaccctgaggcaattttaaagaa
ctgcttttagagtgaaactggatgaaagaaaacatctatatttcaccaaa
acatacacatcctctctccaaatagctgcattgcaacgtattcaatcata
tatgcacagctaagttgaaagtaccgagagtaggatcgctttttctatgc
tcaccatctaatcactcaggtccagactcaagatattctacactgagtga
atctgacagagaagcagcaggactcgttctttctgatgtgaactgaatta
ttctgatttaatttcttaaaattatatcagcacagacttctgtaatattc
aagtatgtgcttacagatatctgtagtgaatcatagtttgtatttctagc
agcacatggatttcaagttctttgaactaacttttgttttcattcctggt
taaatgcagatcacaaagcagaggcaagaaaagaaagaaagactgataga
ttacatgtttacaaagaattacagagggaaaacttaaaaagaaaaacaaa
aggaacaagtcacctaacatcgtggtagaaatttgagaatgaaatgaaaa
aaaaaaggtgtatttctgagatggaattactaatcgatgcatttcataac
tatgctactcttggcaataatagtgtagaaaaatgccacaagaagacata
gggatttaccttcaaattctgtgaggcaaacaaggacaatattatatttt
gttttggtaatctcttggatccctctgatagagaacttaaaggagaattt
ccaacacctctacctgtgcttttattgactagtttgtagctctcgtgagg
aagcatgtttctaagtggcttaatttcatttaattatttatgtatataaa
catacatacactatatgtattagttatgtatttttcataaagatgatata
tgttgtccagcagctttttcaccatcttagtgtgtttttctcttctccac
ttatccctctacatgacccctgtcttccttcccagaataaggttccccca
tttttgagtactgtaggctaccttcttacccttgagctttttctctctct
gcccatgtttccttcattctggttctgaaataatgactttataacactaa

gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaagcagtctggcggttcctca
tgaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatacagaagatgccccaaccggtaagaacgacatatgctccactat
gttcatagcagccttacttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactattcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaat
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggacctgagatga
aaggatggtccatgtagagacttccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctatcaaca
cagaagtggatgctcacagtcagctatggatggatcacagggctcccaat
ggagagctagagaagtagcaaaggagctaaagggatctgcaactctatag
gcggaacaacattatgactaacagtaacccggagctctgactctagctgc
atttgtatcaaagatgcctagtccgcatcactgcaagaaaagcccattgg
aaccgcaaccttaattggccagtcagggaacgccaagacaaaatagaatg
tgtgactaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_75006077_75007302
seq2: B6Ng01-018L04.b_44_1243

seq1  GAATTCAATAATTTTCTTTGCAGAATTTAGAAAACAAGTATGCACATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATTTTCTTTGCAGAATTTAGAAAACAAGTATGCACATTTC  50

seq1  TAACTGGATACACAGAAATTTGAAGATTACCCTGAGGCAATTTTAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGATACACAGAAATTTGAAGATTACCCTGAGGCAATTTTAAAGAA  100

seq1  CTGCTTTTAGAGTGAAACTGGATGAAAGAAAACATCTATATTTCACCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTAGAGTGAAACTGGATGAAAGAAAACATCTATATTTCACCAAA  150

seq1  ACATACACATCCTCTCTCCAAATAGCTGCATTGCAACGTATTCAATCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACATCCTCTCTCCAAATAGCTGCATTGCAACGTATTCAATCATA  200

seq1  TATGCACAGCTAAGTTGAAAGTACCGAGAGTAGGATCGCTTTTTCTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACAGCTAAGTTGAAAGTACCGAGAGTAGGATCGCTTTTTCTATGC  250

seq1  TCACCATCTAATCACTCAGGTCCAGACTCAAGATATTCTACACTGAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCTAATCACTCAGGTCCAGACTCAAGATATTCTACACTGAGTGA  300

seq1  ATCTGACAGAGAAGCAGCAGGACTCGTTCTTTCTGATGTGAACTGAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACAGAGAAGCAGCAGGACTCGTTCTTTCTGATGTGAACTGAATTA  350

seq1  TTCTGATTTAATTTCTTAAAATTATATCAGCACAGACTTCTGTAATATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTTAATTTCTTAAAATTATATCAGCACAGACTTCTGTAATATTC  400

seq1  AAGTATGTGCTTACAGATATCTGTAGTGAATCATAGTTTGTATTTCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGTGCTTACAGATATCTGTAGTGAATCATAGTTTGTATTTCTAGC  450

seq1  AGCACATGGATTTCAAGTTCTTTGAACTAACTTTTGTTTTCATTCCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGGATTTCAAGTTCTTTGAACTAACTTTTGTTTTCATTCCTGGT  500

seq1  TAAATGCAGATCACAAAGCAGAGGCAAGAAAAGAAAGAAAGACTGATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCAGATCACAAAGCAGAGGCAAGAAAAGAAAGAAAGACTGATAGA  550

seq1  TTACATGTTTACAAAGAATTACAGAGGGAAAACTTAAAAAGAAAAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTTTACAAAGAATTACAGAGGGAAAACTTAAAAAGAAAAACAAA  600

seq1  AGGAACAAGTCACCTAACATCGTGGTAGAAATTTGAGAATGAAATGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAGTCACCTAACATCGTGGTAGAAATTTGAGAATGAAATGAAAA  650

seq1  AAAAAAGGTGTATTTCTGAGATGGAATTACTAATCGATGCATTTCATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTGTATTTCTGAGATGGAATTACTAATCGATGCATTTCATAAC  700

seq1  TATGCTACTCTTGGCAATAATAGTGTAGAAAAATGCCACAAGAAGACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTACTCTTGGCAATAATAGTGTAGAAAAATGCCACAAGAAGACATA  750

seq1  GGGATTTACCTTCAAATTCTGTGAGGCAAACAAGGACAATATTATATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTACCTTCAAATTCTGTGAGGCAAACAAGGACAATATTATATTTT  800

seq1  GTTTTGGTAATCTCTTGGATCCCTCTGATAGAGAACTTAAAGGAGAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTAATCTCTTGGATCCCTCTGATAGAGAACTTAAAGGAGAATTT  850

seq1  CCAACACCTCTACCTGTGCTTTTATTGACTAGTTTGTAGCTCTCGTGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACCTCTACCTGTGCTTTTATTGACTAGTTTGTAGCTCTCGTGAGG  900

seq1  AAGCATGTTTCTAAGTGGCTTAATTTCATTTTAATTATTTATGTATATAA  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGCATGTTTCTAAGTGGCTTAATTTCA-TTTAATTATTTATGTATATAA  949

seq1  ACATACATACACTATATGTATTAGTTATGTATTTTTCAATAAAGATGATA  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACATACATACACTATATGTATTAGTTATGTATTTTTC-ATAAAGATGATA  998

seq1  TATGTTGTCCAGCAGCTTTTTCAACCATCCTTAGTGTGTTTTATCCTTCC  1050
      |||||||||||||||||||||| ||||| |||||||||||||    |  |
seq2  TATGTTGTCCAGCAGCTTTTTC-ACCAT-CTTAGTGTGTTTT----TCTC  1042

seq1  TTCTCCAC-TATCCCTCTACATGACCCCCTGTCTTCCTTCCCCAGATAAG  1099
      |||||||| ||||||||||||||| |||||||||||||||||   |||||
seq2  TTCTCCACTTATCCCTCTACATGA-CCCCTGTCTTCCTTCCCAGAATAAG  1091

seq1  GTTCCCCCCATTTTTTTGTAGTACCTGTAGCCTAACCTCCTACCCCTAGA  1149
      ||| |||||||||||  |||    |||||| || |||| ||  |||| ||
seq2  GTT-CCCCCATTTTTGAGTA----CTGTAGGCT-ACCTTCTTACCCTTGA  1135

seq1  GCTTATTCTTCTCTCTGCCACATGTTTCCTTTTCAATTTCCTGGTTTCTG  1199
      |||| ||| |||||||||| |||||||||  ||||   | |||| |||||
seq2  GCTTTTTC-TCTCTCTGCC-CATGTTTCC--TTCA---TTCTGG-TTCTG  1177

seq1  ACATATAATGAAATTTTATAACACTAA  1226
        | ||||||  | |||||||||||||
seq2  --AAATAATG--ACTTTATAACACTAA  1200