BAC Information

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BAC

Clone NameB6Ng01-018P05
Chromosome4 (Build37)4 (Build37)
Map Location 145,213,971 - 145,214,680146,958,021 - 146,958,818
singlet/doubletsingletsinglet
Overlap geneOTTMUSG00000010965
Upstream geneGm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701
Downstream geneLOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018P05.bB6Ng01-018P05.g
ACCDH852200DH852201
length1,0851,007
definitionDH852200|Mus musculus domesticus DNA, BAC clone: B6Ng01-018P05, 5' end.DH852201|Mus musculus domesticus DNA, BAC clone: B6Ng01-018P05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,213,971 - 145,214,680)(146,958,021 - 146,958,818)
sequence
gaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaatgc
tttacccacaaatcccatcttaatagtcatcagagaattcatacaggaga
gaaaccttacaaatgtagtgaatgtgacaaatgctttactaaaaacggga
gtctgagaattcatcagagaattcatacaggagagaacccttacaaatgc
agtgaatgtgacaaatgctttacccacaaatccaatcttaatattcatca
gagaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaat
gctttacccacaaatcccatcttaatagtcatcagagaattcatacagga
gagaaaccttacaaatgtagtgaatgtgacaaatgctttacccgaaaatt
ccatcttagtattcatcagagaattcatacaggagagaacccttacaaat
gcagtgaatgtgacaaatgctttacccaaaaatccaatcttaatattcat
cagagaattcatacaggagagaaaccttataaatgcagtgaatgtgacaa
atgctttactgaaaaaggcagtctgagaattcatcagagaattcatacag
gagagaatccttacaaatgcagtgaatgtgacaaatgctttacccgaaaa
ttccatcttagtattcatcagaaaatccatacaggagagaaaccttacaa
atagtttacatgtgacaaatacaatattcaccatgtcagtctgagaaatc
atcagttacttcatacagtagagaatctttataaatgaagtgaacgagat
aatccttttaccaaaatatatcatcttataatttcattagtgaatactta
gagaagacaaacttcaaatatattataggtatgaatcctttcctttttgc
ctatttcctagaatataacagtgaatatacttacaggctagaaacttaac
tatggcattgtatgaagaaatatctttgactcattggaggtcagagaaaa
atcttaagaccttttaagggatagtattttgtttggaaaatgtggcatat
gttttattttccggtgtattcttgaataacacttg
gaattcacaccggagagaaaccttacaaatgcagtgaatgtgacaaatgc
tttacccgaaaattccatcttggtattcatcatagaattcatacaggaga
gaaaccttacaaatgcagtgaatgtgacaaatgctttactggaaaaggca
gtctgagaattcatcagagaattcatataggagagaaaccttacaaatgt
agtgaatgtgacaaatgctttactggaaaaggcagtctgagaattcatca
gagaattcatacaggagagagacctcacaaatgtagtgaatgtgacaaat
gctttactggaaaaggcagtctgagaattcatcagagaatgcatacagga
gagaaaccttacaagtgtagtgaatgtgacaaatgctttacccaaaaatc
ccatcttaatattcatcagggaattcatacaggagagaaaccttacaaat
gcagtgaatgtgacaaatgctttacccacaaatcccatcttattaatcat
cagaaaattcatacaggagagaaaccttacaaatagtttacatgtgacaa
atacaatactcacaatgtcagtctgagaaatcatgaattttttcatacag
tagagaatatttataaatgaagtgaacgagacaatcctttaccaagatat
atcatcttaaaattcattagagaatagttagagaagacaaacttttcaaa
tatattgtaggtatgaatccttttttttttttttttggcctatttcctag
actgtaacagtgaatactttacagggctagaaacttaactcatgcattgt
atgaagaaatatcttttgacttcacttcaggatagagagaacatctaaga
actttttagggtaaagtattttttgttggggaaaatgtggcatatgtttt
attcatggtgtcttggcacacttggaggctccacactgagaattagtgtg
attatgaaatctttcaaacattcatgcatgttcaattcttagatatgtta
actattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145213971_145214680
seq2: B6Ng01-018P05.b_425_1132

seq1  GACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAGAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAGAATTCA  50

seq1  TACAGGAGAGAACCCTTACAAATGCAGTGAATGTGACAAATGCTTTACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGAGAACCCTTACAAATGCAGTGAATGTGACAAATGCTTTACCC  100

seq1  AAAAATCCAATCTTAATATTCATCAGAGAATTCATACAGGAGAGAAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCAATCTTAATATTCATCAGAGAATTCATACAGGAGAGAAACCT  150

seq1  TATAAATGCAGTGAATGTGACAAATGCTTTAATGAAAAAGGCAGCCTGAG  200
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TATAAATGCAGTGAATGTGACAAATGCTTTACTGAAAAAGGCAGTCTGAG  200

seq1  AATTCATCAGAGAATTCATACAGGAGAGAATCCTTACAAATGCAGTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCAGAGAATTCATACAGGAGAGAATCCTTACAAATGCAGTGAAT  250

seq1  GTGACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAAAATC  300

seq1  CATACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAATACAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAATACAATAT  350

seq1  TCATCATGTCAGTCTGAGAAATCATCAGTTACTTCATACAGTAGAGAATC  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGTCAGTCTGAGAAATCATCAGTTACTTCATACAGTAGAGAATC  400

seq1  TTTATAAATGAAGTGAACGAGACAATCC-TTTACCAAAATATATCATCTT  449
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  TTTATAAATGAAGTGAACGAGATAATCCTTTTACCAAAATATATCATCTT  450

seq1  ATAA-TTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTG  498
      |||| |||||||| |||||||||||||||||||||  |||||||||||| 
seq2  ATAATTTCATTAGTGAATACTTAGAGAAGACAAAC--TTCAAATATATTA  498

seq1  TAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGAATATAACAGTGAA  548
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAGGTATGAATCCTTTCCTTTTTGCCTATTTCCTAGAATATAACAGTGAA  548

seq1  TATACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCT  598
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  TATACTTACAGGCTAGAAACTTAACTATGGCATTGTATGAAGAAATATCT  598

seq1  TTGACTTCATTTCAGGTCAGAGAAAACATCTAAGAACTTTTTAAGGGATA  648
      ||||| |||||  ||||||||||||| |||| |  || ||||||||||||
seq2  TTGAC-TCATTGGAGGTCAGAGAAAA-ATCTTAAGACCTTTTAAGGGATA  646

seq1  CTATTTCTGTTGGGAAAAATGTGGCATATGTTTTA-TTCACGGTGTATTC  697
       ||||| |||| || |||||||||||||||||||| ||  ||||||||||
seq2  GTATTT-TGTTTGG-AAAATGTGGCATATGTTTTATTTTCCGGTGTATTC  694

seq1  TTG-ACAACACTTG  710
      ||| | ||||||||
seq2  TTGAATAACACTTG  708

seq1: chr4_146958021_146958818
seq2: B6Ng01-018P05.g_279_1074

seq1  CAAATGCTTTACTGGAAAAGGCAGTCTGAGAATTCATCAGAGAATTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTTTACTGGAAAAGGCAGTCTGAGAATTCATCAGAGAATTCATA  50

seq1  CAGGAGAGAGACCTCACAAATGTAGTGAATGTGACAAATGCTTTACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGAGACCTCACAAATGTAGTGAATGTGACAAATGCTTTACTGGA  100

seq1  AAAGGCAGTCTGAGAATTCATCAGAGAATGCATACAGGAGAGAAACCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGTCTGAGAATTCATCAGAGAATGCATACAGGAGAGAAACCTTA  150

seq1  CAAGTGTAGTGAATGTGACAAATGCTTTACCCAAAAATCCCATCTTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTAGTGAATGTGACAAATGCTTTACCCAAAAATCCCATCTTAATA  200

seq1  TTCATCAGGGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGGGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGT  250

seq1  GACAAATGCTTTACCCACAAATCCCATCTTATTAATCATCAGAAAATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGCTTTACCCACAAATCCCATCTTATTAATCATCAGAAAATTCA  300

seq1  TACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAATACAATACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAATACAATACTC  350

seq1  ACAATGTCAGTCTGAGAAATCATGAATTTTTTCATACAGTAGAGAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCAGTCTGAGAAATCATGAATTTTTTCATACAGTAGAGAATATT  400

seq1  TATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCTTAAA  450

seq1  ATTCATTAGAGAATAGTTAGAGAAGACAAACTTTTCAAATATATTGTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAGAGAATAGTTAGAGAAGACAAACTTTTCAAATATATTGTAGG  500

seq1  TATGAATCCTTTTTTTTTTTTTTTTGGCCTATTTCCTAGACTGTAACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCCTTTTTTTTTTTTTTTTGGCCTATTTCCTAGACTGTAACAGT  550

seq1  GAATAC-TTACA-GGCTAGAAACTTAACTCATGCATTGTATGAAGAAATA  598
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATACTTTACAGGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATA  600

seq1  TC-TTTGACTTCACTTCAGGATAGAGAGAACATCTAAGAACTTTTTAGGG  647
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGACTTCACTTCAGGATAGAGAGAACATCTAAGAACTTTTTAGGG  650

seq1  TAAAGTA-TTTCTGTTGGGGAAAATGTGGCATATGTTTTATTCATGGTGT  696
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATTTTTTGTTGGGGAAAATGTGGCATATGTTTTATTCATGGTGT  700

seq1  CCTGGCAACACTT-GAGGCTCCACACTAGAGAATTAGTGTGATTATGAAA  745
      | |||| |||||| ||||||||||||| ||||||||||||||||||| ||
seq2  CTTGGC-ACACTTGGAGGCTCCACACT-GAGAATTAGTGTGATTATG-AA  747

seq1  ATCTTGTCAAAACATTCATGCAATGTTCAAATCTTAGATAATGTTAACTA  795
      ||||| || |||||||||||| |||||||| |||||||| ||||||||||
seq2  ATCTT-TC-AAACATTCATGC-ATGTTCAATTCTTAGAT-ATGTTAACTA  793

seq1  TTT  798
      |||
seq2  TTT  796