BAC Information

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BAC

Clone NameB6Ng01-019A15
Chromosome4 (Build37)
Map Location 22,357,887 - 22,359,060
singlet/doubletsinglet
Overlap geneFbxl4
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379
Downstream genePou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019A15.bB6Ng01-019A15.g
ACCDH852247DH852248
length1,1671,137
definitionDH852247|Mus musculus domesticus DNA, BAC clone: B6Ng01-019A15, 5' end.DH852248|Mus musculus domesticus DNA, BAC clone: B6Ng01-019A15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctataaaaacactaaactggagccatccatgacataagtacaaag
aactgggcagactggtgcaggccttgtgtatactctttcattctctgttc
cttcatatgagctttgttcatggaaatttagagggccttgtttttttggt
gtcctccatttctccagctcttatactctttgtggttactcttctatgag
gtccctgagcagaaggatttggtggagacaatctagacatgttcagatgc
ttataaatctatgagtactatctggctgtagggggtctatatttgatcct
atctcctgcaggaggaagcttccctcttgatggttgagcaaggtactcat
ctatcagcatagcaaaatagttttaggagacagctcttcactacattgct
tttctttttgcacagtattatttggttttaccctgggcccctgaactatc
tagtctcaggttctagctcactcaagtggtggctaatgagggtttcatct
tatggaatgaactttaagtcaaatcagttactgcttgcttattcccacaa
gctttgtgccttcattgccttagtatatctagtatatcttgcaggactac
acaatttcagactaaaggtttgtagctgatttgctattcacctttctctt
ttgatagcatgcagggtacctttccggaccaaagatgctgggatatatgg
gataaggctctatgtaggcaccatcttgacttttccatgttcaatgaatt
gtgtgtgtgtactgtcctaggcaatggggttgtgctgccagcttgcagag
ggcaacccattgtattgacaacagcctgggttatttgagtatttccaagg
aacccccttagccaacatctcaattgaatgcaacccagtcctagtactag
aagtcttctttagcaacaagacatggccactggaaaccctattatcccca
ttacttggtgatttcatttagatcaacaacttatatgtatataatttggg
caggtttctactgtatcaggtttcaaacaacccctcaaagctcctactta
agcgttctcctgtatcctgcctaaacacctctccgattggaagccccgag
acaggctggtcgaacttacttgctgccccacaaagaggatactaagggga
gcttctcacctattgct
gaattcaacttggatttttaaattttttattgttaaactctgaatttaaa
aaaacaaaaacaaaaaaaccttaaatcactgcccctggcaattctagatt
ttaggagttgttcttccacaaggcagcactgttgagaattgttcagaatc
ctggaattccatttaccttcactgcatttgttcacaaggaatccatgcca
gaggcaccagcagtgtggccactggtattattttgcccacacatcatgat
agagtatatgaactcagcacttgaactgtcttttgcaatatgtcagtgct
gataaaaatgagtctccaaagtgcttgcatatacttttctctgtatttaa
tattcatcaagggaaaacctgaagcttttcagcatctgggtttggttttg
gttcaaatttctccgtgtccaggtttatgatacattcatagatgatgctt
atattgttgtacatgactgattgtgaataaccttaagcaggcagtcatac
aaaatttatacactttggaccaactgcttaatttgtgaaatattttgcct
gatcttcacagctaagggagttatagcattgtcttttcatagatgaaacc
cagcatttcctaagagatagaaccaagccgcaggcctgagatgttggtcc
tgtagtcagtctctgtgcttctgtgcgagtctcattttcttatttctttt
ccttctgacctgtcttctgcttaacttatcttagctcttttataatattt
taaaagttccaggatatgtagaaatattttgaaaacttccaaaaaccatc
atggttcccaagaatgataaaagtcagccacagccttttactgtgatgca
aggttcgctttactggatagcgctttgttatttaaaacccatttcacagc
tctttcctaaaacatacagctgtaaagtactatgacatactcatagtctg
aaagagtattaagaccccagagtcagtccacctacctgagcatggacacc
tgatctcccttattgaagccatttgtataaaaattatgaagatcagtttt
tccttcaatctctgcttagaagacagccgaccctcgccgggaacaccatc
caagcttgagccgttctcctctcttaaaaaaataata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_22357887_22359060
seq2: B6Ng01-019A15.g_68_1204

seq1  GAATTCAACTTGGATTTTTAAATTTTTTATTGTTAAACTCTGAATTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTGGATTTTTAAATTTTTTATTGTTAAACTCTGAATTTAAA  50

seq1  AAAACAAAAACAAAAAAACCTTAAATCACTGCCCCTGGCAATTCTAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAAAAAAACCTTAAATCACTGCCCCTGGCAATTCTAGATT  100

seq1  TTAGGAGTTGTTCTTCCACAAGGCAGCACTGTTGAGAATTGTTCAGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGTTGTTCTTCCACAAGGCAGCACTGTTGAGAATTGTTCAGAATC  150

seq1  CTGGAATTCCATTTACCTTCACTGCATTTGTTCACAAGGAATCCATGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTCCATTTACCTTCACTGCATTTGTTCACAAGGAATCCATGCCA  200

seq1  GAGGCACCAGCAGTGTGGCCACTGGTATTATTTTGCCCACACATCATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACCAGCAGTGTGGCCACTGGTATTATTTTGCCCACACATCATGAT  250

seq1  AGAGTATATGAACTCAGCACTTGAACTGTCTTTTGCAATATGTCAGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATATGAACTCAGCACTTGAACTGTCTTTTGCAATATGTCAGTGCT  300

seq1  GATAAAAATGAGTCTCCAAAGTGCTTGCATATACTTTTCTCTGTATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAATGAGTCTCCAAAGTGCTTGCATATACTTTTCTCTGTATTTAA  350

seq1  TATTCATCAAGGGAAAACCTGAAGCTTTTCAGCATCTGGGTTTGGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCAAGGGAAAACCTGAAGCTTTTCAGCATCTGGGTTTGGTTTTG  400

seq1  GTTCAAATTTCTCCGTGTCCAGGTTTATGATACATTCATAGATGATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAATTTCTCCGTGTCCAGGTTTATGATACATTCATAGATGATGCTT  450

seq1  ATATTGTTGTACATGACTGATTGTGAATAACCTTAAGCAGGCAGTCATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTGTACATGACTGATTGTGAATAACCTTAAGCAGGCAGTCATAC  500

seq1  AAAATTTATACACTTTGGACCAACTGCTTAATTTGTGAAATATTTTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATACACTTTGGACCAACTGCTTAATTTGTGAAATATTTTGCCT  550

seq1  GATCTTCACAGCTAAGGGAGTTATAGCATTGTCTTTTCATAGATGAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCACAGCTAAGGGAGTTATAGCATTGTCTTTTCATAGATGAAACC  600

seq1  CAGCATTTCCTAAGAGATAGAACCAAGCCGCAGGCCTGAGATGTTGGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTCCTAAGAGATAGAACCAAGCCGCAGGCCTGAGATGTTGGTCC  650

seq1  TGTAGTCAGTCTCTGTGCTTCTGTGCGAGTCTCATTTTCTTATTTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCAGTCTCTGTGCTTCTGTGCGAGTCTCATTTTCTTATTTCTTTT  700

seq1  CCTTCTGACCTGTCTTCTGCTTAACTTATCTTAGCTCTTTTATAATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGACCTGTCTTCTGCTTAACTTATCTTAGCTCTTTTATAATATTT  750

seq1  TAAAAGTTCCAGGATATGTAGAAATATTTTGAAAACTTCCAAAAACCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTCCAGGATATGTAGAAATATTTTGAAAACTTCCAAAAACCATC  800

seq1  ATGGTTCCCAAGAATGATAAAAGTCAGCCACAGCCTTTTACTGTGATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCCCAAGAATGATAAAAGTCAGCCACAGCCTTTTACTGTGATGCA  850

seq1  AGGTTCGCTTTACTGGATAGCGCTTTGTTATTTAAAACCCATTTCACAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCGCTTTACTGGATAGCGCTTTGTTATTTAAAACCCATTTCACAGC  900

seq1  TCTTTCCTAAAAACAATACAAGCTGTAAAGTAACTATGAACAATACTCAT  950
      ||||||||||||   |||| ||||||||||| |||||||   ||||||||
seq2  TCTTTCCTAAAA--CATAC-AGCTGTAAAGT-ACTATGA--CATACTCAT  944

seq1  AGTCTGAAAGAGATATTATAGAACCACAAAGGAGTCAGTCACACTAACTG  1000
      |||||||||||| ||||| || ||| ||   |||||||||   ||| |||
seq2  AGTCTGAAAGAG-TATTA-AG-ACCCCA---GAGTCAGTCCACCTACCTG  988

seq1  AGCAATGGACATCTGATCTCACTTAATTGAAGCCCATTTGATATAAAATA  1050
      ||| ||||||| |||||||| ||| ||||||| ||||||| ||||||| |
seq2  AGC-ATGGACACCTGATCTCCCTT-ATTGAAG-CCATTTG-TATAAAA-A  1033

seq1  TTATGAAGATACAGTTTTATCCCTCAAATCCCATGCTTAGAAGGTACAGT  1100
      |||||||||| ||||||| ||| || |||| | ||||||||||  |||| 
seq2  TTATGAAGAT-CAGTTTT-TCCTTC-AATCTC-TGCTTAGAAG--ACAG-  1076

seq1  CAGACCTCAGCAGGGATCAGCTATCAAAAGGCATTGAGCCATTTTCTTCC  1150
      | ||||   || |||| || | ||| ||  || ||||||| || || || 
seq2  CCGACCCTCGCCGGGAACA-CCATCCAA--GC-TTGAGCCGTTCTCCTCT  1122

seq1  CTTCTCCTTTAAAAAAAAATAATA  1174
      |||         ||||||||||||
seq2  CTT---------AAAAAAATAATA  1137