BAC Information

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BAC

Clone NameB6Ng01-019F18
Chromosome4 (Build37)
Map Location 12,223,519 - 12,224,667
singlet/doubletsinglet
Overlap genenone
Upstream geneDpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019F18.b
ACCDH852470
length1,132
definitionDH852470|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F18, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcacagataacagctggacagcaattaacagaatttctaccca
caacagacaaccagcccctgactcttgagatctggccctcctcaccagag
tatctcaaggtcactatggaggcagggagaaattattaattaaatttaaa
attaaaaaattaaattaaatttaaaaaataaaattattaaaacacagagc
ttcagaagatctaaaatgtttctaaatcttggcatggaattgaaatttat
ctttctttacattcccaaaatgtagtcccagatatggaaggtctatgagt
catagagttactgactgaatcccatgagcaacacttattaatcagctctt
ctttctccataactgcatcatgcatgccatgtacccatgacgaaaacact
atatgtttacgttggactgaggtgaaagttaggaagagctttaaatatca
tctgggcgtttacaacagagtaggtccatgcccgtgagctaataaacggg
tcaagcactgctttccaggctgagcatggttatccaaccttatcccttac
ccactcagacaccctgagcattcttgaacttcagcaatgaccaaagccac
ctgttgctgtggttcatggatatactactataggggaactctagctggta
gcttctagaatagtcaagcccaggcacaagacacctaaatacaaggtgat
ctctgaaacctgtttggctccctgcctcccttctatctcagttttgagcc
ctaaatctacttaaagcgattctgtaaaccctgctcctgttccagatgct
ggcaccaagcttgcccttctgcctatgtcaggaagcattcagaaccatgg
ggccctagcctgcatacttggtaaaatgccatttcagcttctgggttcat
actgatattggcaccttagttcccagataatggagttttgccttgcagtg
gcagcagtgtctgcctagagaaagtcacagcctcagctgatagattttta
tctctaaacacagatttttatactagcgtagcatgcagagtctattacat
gcacagtcaagggcgtcactggtttgaacatctgtgacaccttgtattct
cagcactgttctcttcataagcattctgtccc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12223519_12224667
seq2: B6Ng01-019F18.b_43_1174 (reverse)

seq1  GGGACAGAATGCTGATGGAAGAG-ACAGTGCTGAG-ATAC-AGGTGTCAA  47
      ||||||||||||| || |||||| ||||||||||| |||| ||||||| |
seq2  GGGACAGAATGCTTAT-GAAGAGAACAGTGCTGAGAATACAAGGTGTC-A  48

seq1  CAGAATGTTCAAACCAGTGACGCCCCTTGGACTTGTGCAATGTAATAGAC  97
      ||| |||||||||||||||||||||  | ||| ||||| |||||||||||
seq2  CAG-ATGTTCAAACCAGTGACGCCC--TTGAC-TGTGC-ATGTAATAGAC  93

seq1  TCTGCATGGCCTTACCGCTAGGTATAAAAATCTTGGTGTTTAGAGATAAA  147
      ||||||||  ||   ||||| ||||||||||||  |||||||||||||||
seq2  TCTGCATG--CT--ACGCTA-GTATAAAAATCT--GTGTTTAGAGATAAA  136

seq1  AATCCTATTCCAGCTGGAGGCTGTGACTTTTCTCTAGGCAGACACTGCTG  197
      ||| ||||  ||||| ||||||||||| ||||||||||||||||||||||
seq2  AAT-CTAT--CAGCT-GAGGCTGTGAC-TTTCTCTAGGCAGACACTGCTG  181

seq1  CCACTGCAAGGCAAAACTCCATTTATCTGGGAACTAAGGTGCCAATATCA  247
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCACTGCAAGGCAAAACTCCA-TTATCTGGGAACTAAGGTGCCAATATCA  230

seq1  GTATGAACCCAGAAGCTGAAATGGCATTTTACCAAGTATGCAGGCTAGGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAACCCAGAAGCTGAAATGGCATTTTACCAAGTATGCAGGCTAGGG  280

seq1  CCCCATGGTTCTGAATGCTTCCTGACATAGGCAGAAGGGCAAGCTTGGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGGTTCTGAATGCTTCCTGACATAGGCAGAAGGGCAAGCTTGGTG  330

seq1  CCAGCATCTGGAACAGGAGCAGGGTTTACAGAATCGCTTTAAGTAGATTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTGGAACAGGAGCAGGGTTTACAGAATCGCTTTAAGTAGATTT  380

seq1  AGGGCTCAAAACTGAGATAGAAGGGAGGCAGGGAGCCAAACAGGTTTCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCAAAACTGAGATAGAAGGGAGGCAGGGAGCCAAACAGGTTTCAG  430

seq1  AGATCACCTTGTATTTAGGTGTCTTGTGCCTGGGCTTGACTATTCTAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACCTTGTATTTAGGTGTCTTGTGCCTGGGCTTGACTATTCTAGAA  480

seq1  GCTACCAGCTAGAGTTCCCCTATAGTAGTATATCCATGAACCACAGCAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAGCTAGAGTTCCCCTATAGTAGTATATCCATGAACCACAGCAAC  530

seq1  AGGTGGCTTTGGTCATTGCTGAAGTTCAAGAATGCTCAGGGTGTCTGAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTTTGGTCATTGCTGAAGTTCAAGAATGCTCAGGGTGTCTGAGT  580

seq1  GGGTAAGGGATAAGGTTGGATAACCATGCTCAGCCTGGAAAGCAGTGCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGGATAAGGTTGGATAACCATGCTCAGCCTGGAAAGCAGTGCTT  630

seq1  GACCCGTTTATTAGCTCACGGGCATGGACCTACTCTGTTGTAAACGCCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGTTTATTAGCTCACGGGCATGGACCTACTCTGTTGTAAACGCCCA  680

seq1  GATGATATTTAAAGCTCTTCCTAACTTTCACCTCAGTCCAACGTAAACAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATATTTAAAGCTCTTCCTAACTTTCACCTCAGTCCAACGTAAACAT  730

seq1  ATAGTGTTTTCGTCATGGGTACATGGCATGCATGATGCAGTTATGGAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTTTTCGTCATGGGTACATGGCATGCATGATGCAGTTATGGAGAA  780

seq1  AGAAGAGCTGATTAATAAGTGTTGCTCATGGGATTCAGTCAGTAACTCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCTGATTAATAAGTGTTGCTCATGGGATTCAGTCAGTAACTCTA  830

seq1  TGACTCATAGACCTTCCATATCTGGGACTACATTTTGGGAATGTAAAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATAGACCTTCCATATCTGGGACTACATTTTGGGAATGTAAAGAA  880

seq1  AGATAAATTTCAATTCCATGCCAAGATTTAGAAACATTTTAGATCTTCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATTTCAATTCCATGCCAAGATTTAGAAACATTTTAGATCTTCTG  930

seq1  AAGCTCTGTGTTTTAATAATTTTATTTTTTAAATTTAATTTAATTTTTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGTGTTTTAATAATTTTATTTTTTAAATTTAATTTAATTTTTTA  980

seq1  ATTTTAAATTTAATTAATAATTTCTCCCTGCCTCCATAGTGACCTTGAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTTAATTAATAATTTCTCCCTGCCTCCATAGTGACCTTGAGA  1030

seq1  TACTCTGGTGAGGAGGGCCAGATCTCAAGAGTCAGGGGCTGGTTGTCTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGGTGAGGAGGGCCAGATCTCAAGAGTCAGGGGCTGGTTGTCTGT  1080

seq1  TGTGGGTAGAAATTCTGTTAATTGCTGTCCAGCTGTTATCTGTGCTGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTAGAAATTCTGTTAATTGCTGTCCAGCTGTTATCTGTGCTGAAT  1130

seq1  TC  1149
      ||
seq2  TC  1132