BAC Information

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BAC

Clone NameB6Ng01-020C05
Chromosome4 (Build37)4 (Build37)
Map Location 145,660,376 - 145,661,376146,766,066 - 146,766,893
singlet/doubletsingletsinglet
Overlap geneLOC100041433
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390
Downstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020C05.bB6Ng01-020C05.g
ACCDH853023DH853024
length1,0541,085
definitionDH853023|Mus musculus domesticus DNA, BAC clone: B6Ng01-020C05, 5' end.DH853024|Mus musculus domesticus DNA, BAC clone: B6Ng01-020C05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,660,376 - 145,661,376)(146,766,066 - 146,766,893)
sequence
gaattctctgatgctttcccagaatgaatttgtcagtaaagcatttgtcg
cattcactacatttgtaaggtttctctcctgaatgaattctacgatgaaa
actaagatgggatggttgggtaaagcatttgtcacactcactgcatttgt
aaggtttctctccagtatgaattctctgatgaactctcagatagcctttg
tcagtaaagcatttgtcacactcactgcatttgtaaggtttctctccagt
atgaattctctgatgaactctcagatagcctttgtcagtaaaacatttgt
cacactcactgcatttgtaaggtttctctcccgtatgaattctctgatgc
tttctcagagtgcatttgtcagtaaagcatttgtcgcattcactacattt
gtaaggtttctctcctgaatgaattgtatgatgaatactaagatgggaag
gttgggtaaagcatttgtcactttcactatatttgtaagatttctttcct
ggctttctctgctgactttgaagactgtcactctgagtaaagcatttgtc
aaattcaccacaagtgtaagtgttcatttcactattgttttgtctcacaa
tgggtttatgtttagaaaccaaaacctcatcaagatttttatttctgttg
tgttctttcttctctatgtgggttccttgattgagactaatgatagaaga
cccctttaaacagtttacacagtctttatatgtgcaaacttctttagtgg
tcccagttttatgtctttttaggtttgagaattggaatgtggcatctctt
tggttagtgttataaggtgtactttcggaggatcatgaatcacattacta
agctcattacatttagaagacttctttcggatatgccatgctcattgaca
atgtgctgtatgtcttgatcaagaacgactcatttttcacagatgcattg
atttctgaaaaagtgggaattaggatatagggatacttatatgaggagta
gatgattcataataggttctatgtatccactctcagaaaggttttccttt
tttt
gaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaatgc
tttactaaaaaatccagtttgaggattcatcagagatttcatacaggaga
gaaaccttacaaatgtagtgaatgtggcaaatgttttattaaaaaatgca
gtctgataattcatcagagaattcatacaggagagaaaccttacaaatgt
agtgaatgtgacaaagctttactgagaaagtcagatggcatcagagaact
catacaggggagaattcttacaaatgtattgaatgtgacaaatgttttgc
ccagaaatcctatcttgtttttaatcacagaaatcatacattaaagaagc
cttacaaatgcagtcaatgtgacaaatgattttcccacaaacttagtctg
agaatgcatcagagaattcatacagtagagaaaatttacaaaaatgcagt
gaatgtgataaatgctttactaataaaggcagactgagaatcagataatt
tatacatttaaagaaaaaccttacaagtattttgtatgtgataaatgcag
tacccacaacatcagtctgacaaatcaacaaatatttcaaacagtagagc
aacattataaatgaaatgaatgagataatcctttaacaagaaatatcatc
ttaaaattcactggagaattcttccaaaagggaaacttttcaaatacatt
gatggtttgaatcctttattttggcctatctcttagaatgtaacagataa
tttatacaggcaagaatcttaacaaatataatatatgctgaaatatcttt
gacttcatttcagtgcagaaaaatatgtaaaatatttttttatgggaaaa
tagttctctggggaaatgtggcatatgttttacacgggtatattcttttc
acagttagtgctctaactagagaattatgatctgaaactttgaaaccttc
atgcatgtcaatctagatatgtcaatattatgctgcagtactctgaatat
tgtatgaagaaacatttcataaactttttacttgtcaccctcaattttaa
tgaatgaagtcagggtgaagcgagaattgatgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145660376_145661376
seq2: B6Ng01-020C05.b_120_1100

seq1  CTCTCCTGAATGAATTCTACGATGAAAACTAAGATGGGATGGTTGGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGAATGAATTCTACGATGAAAACTAAGATGGGATGGTTGGGTAA  50

seq1  AGCATTTGTCACACTCACTGCATTTGTAAGGTTTCTCTCCAGTATGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGTCACACTCACTGCATTTGTAAGGTTTCTCTCCAGTATGAATT  100

seq1  CTCTGATGAACTCTCAGATAGCCTTTGTCAGTAAAGCATTTGTCACACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGAACTCTCAGATAGCCTTTGTCAGTAAAGCATTTGTCACACTC  150

seq1  ACTGCATTTGTAAGGTTTCTCTCCAGTATGAATTCTCTGATGAACTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTTGTAAGGTTTCTCTCCAGTATGAATTCTCTGATGAACTCTCA  200

seq1  GATAGCCTTTGTCAGTAAAGCATTTGTCACACTCACTGCATTTGTAAGGT  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATAGCCTTTGTCAGTAAAACATTTGTCACACTCACTGCATTTGTAAGGT  250

seq1  TTCTCTCCCGTATGAATTCTCTGATGCTTTCTCAGAGTGCATTTGTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCCGTATGAATTCTCTGATGCTTTCTCAGAGTGCATTTGTCAGT  300

seq1  AAAGCATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCTGAATGAA  350

seq1  TTGTATGATGAATACTAAGATGGGAAGGTTGGGTAAAGCATTTGTCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGATGAATACTAAGATGGGAAGGTTGGGTAAAGCATTTGTCACTT  400

seq1  TCACTATATTTGTAAGATTTCTTTCCTGGCTTTCTCTGCTGACTTTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATATTTGTAAGATTTCTTTCCTGGCTTTCTCTGCTGACTTTGAAG  450

seq1  ACTGTCACTCTGAGTAAAGCATTTGTCAAATTCACCACAAGTGTAAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCACTCTGAGTAAAGCATTTGTCAAATTCACCACAAGTGTAAGTGT  500

seq1  TCATTTCACTATTGTTTTGTCTCACAATGGGTTTATGTTTAGAAACCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCACTATTGTTTTGTCTCACAATGGGTTTATGTTTAGAAACCAAA  550

seq1  ACCTCATCAAGATTTTTATTTCTGTTGTGTTCTTTCTTCTCTATGTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCAAGATTTTTATTTCTGTTGTGTTCTTTCTTCTCTATGTGGGT  600

seq1  TCCTTGATTGAGACTAATGATAGAAGACCCCTTTAAACAGTTTACACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATTGAGACTAATGATAGAAGACCCCTTTAAACAGTTTACACAGT  650

seq1  CTTTATATGTGCAAACTTCTTTAGTGGTCCCAGTTTTATGTCTTTTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATGTGCAAACTTCTTTAGTGGTCCCAGTTTTATGTCTTTTTAGG  700

seq1  TTTGAGAATTGGAATGTGGCATCTCTTTGGTTAGTGTTATAAGGTGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAATTGGAATGTGGCATCTCTTTGGTTAGTGTTATAAGGTGTACT  750

seq1  TTCGGAGGATTCATGAATCACATTACTAAGCTCATTACATTTAGAAGACT  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAGGA-TCATGAATCACATTACTAAGCTCATTACATTTAGAAGACT  799

seq1  TCTTTCGGATATGCCCATGCTCATTGACAATGTGCTGTATGTCTTGATCC  850
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  TCTTTCGGATATG-CCATGCTCATTGACAATGTGCTGTATGTCTTGAT-C  847

seq1  AAGAACGACTCATTTTTTCCACAGATGCATTGATTTTCTGAAAAAAGTGG  900
      |||||||||||||||||  |||||||||||||| |||||| |||||||||
seq2  AAGAACGACTCATTTTT--CACAGATGCATTGA-TTTCTG-AAAAAGTGG  893

seq1  GAATTAGGGATAATAGGGATTACTTATATGAGGAGTAAGTATGATTCAAT  950
      |||||| |||| ||||||| |||||||||||||||||   ||||||| ||
seq2  GAATTA-GGAT-ATAGGGA-TACTTATATGAGGAGTA--GATGATTC-AT  937

seq1  AATCAGTGTTCTAATGTATTCATACTCTCAAGAGAGGTTTTTCCTTTTTT  1000
      ||| || ||||| |||||| |  |||||| ||| ||| ||||||||||||
seq2  AAT-AG-GTTCT-ATGTATCC--ACTCTC-AGAAAGG-TTTTCCTTTTTT  980

seq1  T  1001
      |
seq2  T  981

seq1: chr4_146766066_146766893
seq2: B6Ng01-020C05.g_358_1151

seq1  ATGTTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACAT  50

seq1  TAAAGAAGCCTTACAAATGTAGTCAATGTGACAAATGATTTTCCCACAAA  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAAAGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAA  100

seq1  CTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAATTTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAATTTACAA  150

seq1  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAAT  200
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAG---  197

seq1  TAATCAGATAATTTATACATTTAAAAAAAAACCTTACAAGTATTTTGTAT  250
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  -AATCAGATAATTTATACATTTAAAGAAAAACCTTACAAGTATTTTGTAT  246

seq1  GTGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAAATATTT  296

seq1  CAAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAATCCTTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTAGAGCAACATTATAAATGAAATGAATGAGATAATCCTTTAAC  346

seq1  AAGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACT  396

seq1  TTTCAAATACATTGATGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATACATTGATGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGA  446

seq1  ATGTAACAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATG  496

seq1  CTGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAATATT  550
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGAAATATCTTTGACTTCATTTCAGTGCAG-AAAAATATGTAAAATATT  545

seq1  TTTTTATGGGAAAAAAAGTTCTCCTGGGGAAATGTGGCATATGTTTTACA  600
      |||||||||| |||| |||||| |||||||||||||||||||||||||||
seq2  TTTTTATGGG-AAAATAGTTCT-CTGGGGAAATGTGGCATATGTTTTACA  593

seq1  CGGGTAATATTCTTTTCAACAGTTAGTGCTCTAAACTAGAGAATTATGAA  650
      ||||| ||||||||||| |||||||||||||| ||||||||||||||| |
seq2  CGGGT-ATATTCTTTTC-ACAGTTAGTGCTCT-AACTAGAGAATTATG-A  639

seq1  TCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTTAGATAATGT  700
      |||| |||||||   |||||||||||| ||||   |||| ||||| ||||
seq2  TCTG-AAACTTT--GAAACCTTCATGC-ATGT--CAATC-TAGAT-ATGT  681

seq1  CAACTATTATGCTGGCAGTAACTCTGAATATATGATAATGAAGAAACATT  750
      ||| ||||||||| ||||| ||||||||||| ||   ||||||||||| |
seq2  CAA-TATTATGCT-GCAGT-ACTCTGAATAT-TG--TATGAAGAAACA-T  724

seq1  TTCATTAAACTTTTACTTGTTCACCCTCAAATATTATATG-ATGAAGTCA  799
      ||||| ||  ||||||||| |||||||| ||| ||| ||| |||||||||
seq2  TTCATAAACTTTTTACTTG-TCACCCTC-AATTTTA-ATGAATGAAGTCA  771

seq1  GGTGTGAAAGCCAGAAGAATATGATGTTG  828
      || ||| |||| ||||     ||||||||
seq2  GG-GTG-AAGCGAGAA----TTGATGTTG  794