BAC Information

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BAC

Clone NameB6Ng01-020F16
Chromosome4 (Build37)15 (Build37)
Map Location 66,665,978 - 66,667,18860,455,165 - 60,455,351
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020F16.bB6Ng01-020F16.g
ACCDH853177DH853178
length1,186945
definitionDH853177|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F16, 5' end.DH853178|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,665,978 - 66,667,188)(60,455,165 - 60,455,351)
sequence
gaattccttcagtgattgcctatgatgatgttaaactgaaaactataata
atcccattcttaaaaaagttttttgtttgtttcttttgcttttttgtctt
ggtgttatcacagaaattaaaacaatacgaaggcttcctccattgttact
tctgaagcacctgtcacatacagattactcccaaaatagtccattcccaa
acctagtttacattgtatgtttaagtagaatccaaatgttatatggccaa
ctagcttaaaagcaaatccttcacttcattccactactatggataccaat
tctctattcagaccttgatttgaggctttatagatggggtatatgataag
ctctttaaaaagacagggaacatgcttaaaatcttgattataagatcaag
caataaacgcccttttaaacccactttaccagtactttactagtgttatt
atatatctatatgtatggcaggtagacttctgtgtgcatgcatttatggc
attttcttacataatgaataagggttcatgtgattaaccaatagagtact
gcaaaaagcattcttatattactcataatttcatgggaaaaaagacagct
tctgtcccttcttatcttgatatatttcctctaggggaaggcagccattc
agacaatcttatactccaggtctaatcatcagatcatatcagtcctagaa
aatgccctctatgtaaaaccataaaaagaattagctgctaaacatattac
agatttctaaagatccttgagaaattgtttaaggaaatattttctttatc
agatagtgaatttctgcatactttgctatataccaataaatagtcagtca
acaatgcaatgccacagtgtatacatagtaaagttaatacaaggttcata
aaactaagttggggataactatagtgtcagtttcattagttgttgtcaat
ctgagttacaatatatatgtaaaattgagctgaggacttgtcatggaata
aataaacattgttcctggtggctctctggatcattaggtaggcttatatc
ttattcagcatggcatttgtggattctttactttagacataagtagcagg
tgagcttcagtggagatgccgagttgtatgcctgccactctggtgggctg
atagattacaaatccctatcatgctttaggttgatt
gaattcaatatcccactctcaccaaaaaagacaaatcttccagacaaaaa
aaaataaatggagaaaccatggagttgacagatgttataaggaaaatgga
caaacacaaacctagagaacatttcatgccaggacaaaagaatatacctt
cttgccaggcagtggtggcacatgcctttaatcacagcacttgggaggca
gaggcagtttctgagttcgaggccagcctggtctacaaactgagttgtcc
agaacagccaggatacacagagaaaccctgtctcaaaaaaccaaaaccca
acccccccaaaacacacacacacacacacataaaaaccaaagaatatacc
ttcttagcaccccatagaacattctctaaaattgactgtttacttgttca
caaagaaagtcgcaacagatacaagaaatggaaacaaacccctcaatcca
aacacagattgagcctggatttcaacaaaagaagcaacaccaagcctata
aacaatggaaactgaagaacttcgtactgaaggataactgtgtcagggca
gaaataaagacataaaaaagaatttctagaatgcaatgaaaatgaacata
caacgtacccaaacttttcagacacaattaacccagtgcctttcaaagag
gaaagttcatagcattaaatgccttcataaagacattggagagatctcat
agtagcaactcatcagcatatttggaagctctagaactctagaacaaaaa
agcacaactgctgaaacagacagctggaaacaatcaacctgaaggctaaa
atcagtaaaaatagaaacagtggaacaaaaggtgcttctttaggaaagtt
accaagatagataaacccttacccacattactgacacttagagagagata
tccaaactagcaaatcagaaacatacatagacactgagagatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66665978_66667188
seq2: B6Ng01-020F16.b_46_1231

seq1  GAATTCCTTCAGTGATTGCCTATGATGATGTTAAACTGAAAACTATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGTGATTGCCTATGATGATGTTAAACTGAAAACTATAATA  50

seq1  ATCCCATTCTTAAAAAAGTTTTTTGTTTGTTTCTTTTGCTTTTTTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTCTTAAAAAAGTTTTTTGTTTGTTTCTTTTGCTTTTTTGTCTT  100

seq1  GGTGTTATCACAGAAATTAAAACAATACGAAGGCTTCCTCCATTGTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTATCACAGAAATTAAAACAATACGAAGGCTTCCTCCATTGTTACT  150

seq1  TCTGAAGCACCTGTCACATACAGATTACTCCCAAAATAGTCCATTCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCACCTGTCACATACAGATTACTCCCAAAATAGTCCATTCCCAA  200

seq1  ACCTAGTTTACATTGTATGTTTAAGTAGAATCCAAATGTTATATGGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTTTACATTGTATGTTTAAGTAGAATCCAAATGTTATATGGCCAA  250

seq1  CTAGCTTAAAAGCAAATCCTTCACTTCATTCCACTACTATGGATACCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTAAAAGCAAATCCTTCACTTCATTCCACTACTATGGATACCAAT  300

seq1  TCTCTATTCAGACCTTGATTTGAGGCTTTATAGATGGGGTATATGATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTCAGACCTTGATTTGAGGCTTTATAGATGGGGTATATGATAAG  350

seq1  CTCTTTAAAAAGACAGGGAACATGCTTAAAATCTTGATTATAAGATCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAAAAGACAGGGAACATGCTTAAAATCTTGATTATAAGATCAAG  400

seq1  CAATAAACGCCCTTTTAAACCCACTTTACCAGTACTTTACTAGTGTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACGCCCTTTTAAACCCACTTTACCAGTACTTTACTAGTGTTATT  450

seq1  ATATATCTATATGTATGGCAGGTAGACTTCTGTGTGCATGCATTTATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTATATGTATGGCAGGTAGACTTCTGTGTGCATGCATTTATGGC  500

seq1  ATTTTCTTACATAATGAATAAGGGTTCATGTGATTAACCAATAGAGTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTACATAATGAATAAGGGTTCATGTGATTAACCAATAGAGTACT  550

seq1  GCAAAAAGCATTCTTATATTACTCATAATTTCATGGGAAAAAAGACAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAGCATTCTTATATTACTCATAATTTCATGGGAAAAAAGACAGCT  600

seq1  TCTGTCCCTTCTTATCTTGATATATTTCCTCTAGGGGAAGGCAGCCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTTCTTATCTTGATATATTTCCTCTAGGGGAAGGCAGCCATTC  650

seq1  AGACAATCTTATACTCCAGGTCTAATCATCAGATCATATCAGTCCTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATCTTATACTCCAGGTCTAATCATCAGATCATATCAGTCCTAGAA  700

seq1  AATGCCCTCTATGTAAAACCATAAAAAGAATTAGCTGCTAAACATATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCTCTATGTAAAACCATAAAAAGAATTAGCTGCTAAACATATTAC  750

seq1  AGATTTCTAAAGATCCTTGAGAAATTGTTTAAGGAAATATTTTCTTTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTAAAGATCCTTGAGAAATTGTTTAAGGAAATATTTTCTTTATC  800

seq1  AGATAGTGAATTTCTGCATACTTTGCTATATACCAATAAATAGTCAGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTGAATTTCTGCATACTTTGCTATATACCAATAAATAGTCAGTCA  850

seq1  ACAATGCAATGCCACAGTGTATACATAGTAAAGTTAATAACAAGGTTCAT  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACAATGCAATGCCACAGTGTATACATAGTAAAGTTAAT-ACAAGGTTCAT  899

seq1  AAAAACTAAGTTGGGGATAACTATAGTGTCAGTTTCATTAGGTTGTTGTC  950
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  -AAAACTAAGTTGGGGATAACTATAGTGTCAGTTTCATTA-GTTGTTGTC  947

seq1  AAATCTGAGGTTACAATATATATGTAAAATTGAGCTGAGGACTTGTCATG  1000
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -AATCTGA-GTTACAATATATATGTAAAATTGAGCTGAGGACTTGTCATG  995

seq1  GAATACATAAACATTGTTCCT-GTGGCTCCTTCTGGTATCATTAAGGTTA  1049
      ||||| ||||||||||||||| |||||||  ||||| |||||||  | ||
seq2  GAATAAATAAACATTGTTCCTGGTGGCTC--TCTGG-ATCATTA--GGTA  1040

seq1  GGCTAATAATCTTATTCCAAGCATGGCATTTTGTGATTTCTTTACTTTAG  1099
      |||| || |||||||||  ||||||||| ||||||  |||||||||||||
seq2  GGCTTAT-ATCTTATTC--AGCATGGCA-TTTGTGGATTCTTTACTTTAG  1086

seq1  ACTATAGTAGCAAGTGAAGTCTTCAGT-GAGATGCTGAGTTTTGTATTGC  1148
      ||   ||||||| ||||   ||||||| ||||||| |||  ||||| |||
seq2  ACATAAGTAGCAGGTGA--GCTTCAGTGGAGATGCCGAG--TTGTA-TGC  1131

seq1  CTGCCACTCTGGTAGGGCTGAGTAGATCACAAACCCTATATCAGGGCTCT  1198
      ||||||||||||| ||||||| ||||| ||||| ||  ||||| |     
seq2  CTGCCACTCTGGT-GGGCTGA-TAGATTACAAATCC-CTATCATG-----  1173

seq1  ATTAAGGTTGATT  1211
       || |||||||||
seq2  CTTTAGGTTGATT  1186

seq1: chr15_60455165_60455351
seq2: B6Ng01-020F16.g_221_397

seq1  GCCAGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAG  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCAGGCAGTGGTGGCACATGCCTTTAATCACAGCACTTGGGAGGCAGAG  50

seq1  GCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTATGAAGTGAGT--T  98
      ||||     ||||||||||||||||||||||||||||  || |||||  |
seq2  GCAG-----TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAACTGAGTTGT  95

seq1  CCAGGACAGCCAGGACTGCACAGAGAAATCCTGTCTC--AAAACCAAAAT  146
      |||| |||||||||| | |||||||||| ||||||||  ||||||||   
seq2  CCAGAACAGCCAGGA-TACACAGAGAAACCCTGTCTCAAAAAACCAA---  141

seq1  AAACCAACCAAACAAACAAAAAACACACACACACACGCACA  187
      || ||||||   |   ||||| |||||||||||||| ||  
seq2  AACCCAACC---CCCCCAAAACACACACACACACACACA--  177