BAC Information

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BAC

Clone NameB6Ng01-020G12
Chromosome4 (Build37)
Map Location 145,065,611 - 145,212,831
singlet/doubletdoublet
Overlap geneLOC622846, LOC666314, LOC545701, OTTMUSG00000010965
Upstream gene9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576
Downstream geneLOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020G12.bB6Ng01-020G12.g
ACCDH853212DH853213
length1,0531,055
definitionDH853212|Mus musculus domesticus DNA, BAC clone: B6Ng01-020G12, 5' end.DH853213|Mus musculus domesticus DNA, BAC clone: B6Ng01-020G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,211,760 - 145,212,831)(145,065,611 - 145,066,680)
sequence
gaattctcaggctgcctttttcattaaagcatttgtcacattcactacat
ttgtaaggtttctctcctgtatgaattctctgatgcatactaaaactgaa
tttgtgtttaaaacatttgtcacattcactgcatttgtaagggttctctc
ctgtatgaattctctgatgaatattaagatgggatttgtgggtaaagcat
ttgtcacattcactacatttgtaaattttctcttctgcatgaattccctg
atggatactaagatggatctgatgggtaaagcatttgtcacttttactac
ttttgtaaggtttctttccatgataaattctctgctgactttgaagtttt
tctctctgggtaagatatttgtcaaattcactacatttgtaagggttcac
tccagtattgtttcgtttcaccatgactttatgtttagaaacaaaaacct
tctcaaattctgcatttcggttgtgttttttcttctgcatgtggattcct
tgattgagactaatggtagaaaacaaacttacactgtttacagagtcatt
gtatttgcaaacttctttagtgttcctgggcttaagtcttttttggttcg
agtattgaagagagctgtgataagttttgtaaggtgtacattggggggat
tcaagaatcaccttgctaagcttgtcccatttagaagacttctcttgaat
attcatgtgttcatggacaatgtactggctgtcttgatccaagaccttcc
tatactttccacatatgcaatgattttctgaaaaaacaaaaacaaaaaca
aaatggggcaattagaggtgacatgaattacttatataaggataagggac
tcataaccagtgagcttatggattcatactctcagagaggttctctctct
ctctctcctttttttttggaattattacatgtatcctcaagacctcaaat
atgatctatatcagtgatgaaatgatatagcctgctaaattttatttcaa
atagacatcataccacccagatttatttaccagatgctcctcttcttaga
aaa
gaattcttctgtttacagatgatgaaactgaggggtaaagctgaccttgg
tggtgcacgtctttaatcccagtgctcaggtggagggtgcatctttgagt
tcaaggccagcctggtatacagggtgaattcctggacagtcaggactaca
cagagaaatcatgtctcaaaaaacaaaacaaaaatacttcgtttttatat
atgtgtgatgtttctttgcatataagtcagtgtaccatatccgtgcctgg
gactcacagaggctgaaagagagcatcagttccctaggaactgcagtaat
agttggtggtcatgagccactatgtgggtacctgagaacaacctttgttc
ccctgaagaggagccagtgctcttaaccaccaagccatctatccagatcc
tagttcttctctttaaaatgcggctggcaaaaagcatccttgcttcaagt
ggtggagaattaatacaactttttatttctaaagcatttggaaaagtgcc
tggcctttcttcttgatgctcaggagcacagtattagctgtgaggtgggt
tctgatcactgcatactgtacacagctggtgctttgtaaatcaaagctgg
gggcagtgaccccagaatcctggaccacagtcattctttgcctcctttgt
gtttcaagagagggtctcatgtagctcaggctggtcttccctcaaactga
ctatgtcacagaggatgtgcctgactctttaatcctttggcttccacctc
acaaattctgaggggactaaaagcgtgtaccatctcaacatgtgacatgg
gtctgagctcttgaatgcaaagtttgtggtaccaggctagcacattccca
gcctgagttactactttccttttaacattttcttattttattgaaacata
tattttttgtataaggtgttttcgctacatgtgtatctgtgcccatccat
atatgcctggtgccacagaggtcagagagacattgtacttcctgaattgg
agtttcagtttgatccaccatgtgagtctgggatcaccctgctctccaag
ggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145211760_145212831
seq2: B6Ng01-020G12.b_37_1089 (reverse)

seq1  TTTTCTTAAGAGAGGAGCAATTCTGGGTTAATATAATCTGGGTGGGTATG  50
      |||||| |  |||||||||  ||| ||| |||| ||||||||| ||||||
seq2  TTTTCTAAGAAGAGGAGCA--TCT-GGTAAATA-AATCTGGGT-GGTATG  45

seq1  ATGTCTAATTTGAAAATAAAATTTAGCAGGCTATTATCATTTTCAATCAC  100
      |||||| ||||| |||||||||||||||||||| ||||||||   |||||
seq2  ATGTCT-ATTTG-AAATAAAATTTAGCAGGCTA-TATCATTT--CATCAC  90

seq1  TTGATATAGATCATATTTGAGGTTCTTTGAGGATACATGTAATAATTCCA  150
       ||||||||||||||||||||||   ||||||||||||||||||||||| 
seq2  -TGATATAGATCATATTTGAGGT--CTTGAGGATACATGTAATAATTCC-  136

seq1  AAAAAAAAAGGAGAGAGAGAGAGAGAAACCTCTCTTGAGAGTATGAATCC  200
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  AAAAAAAAAGGAGAGAGAGAGAGAG-AACCTCTC-TGAGAGTATGAATCC  184

seq1  ATAAGCTCACTGGTTATTGAGTCCCTTATTCCTTATATAAGTAATTCATG  250
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  ATAAGCTCACTGGTTA-TGAGTCCCTTA-TCCTTATATAAGTAATTCATG  232

seq1  TCACCTCTAATTGCCCCATTTTGTTTTTGTTTTTGTTTTTTTCAGAAAAT  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCACCTCTAATTGCCCCATTTTGTTTTTGTTTTTG-TTTTTTCAGAAAAT  281

seq1  CATTGCATATGTGGAAAGTATAGGAAGGTCTTGGATCAAGACAGCCAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATATGTGGAAAGTATAGGAAGGTCTTGGATCAAGACAGCCAGTA  331

seq1  CATTGTCCATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGACA  381

seq1  AGCTTAGCAAGGTGATTCTTGAATCCCCCCAATGTACACCTTACAAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGCAAGGTGATTCTTGAATCCCCCCAATGTACACCTTACAAAACT  431

seq1  TATCACAGCTCTCTTCAATACTCGAACCAAAAAAGACTTAAGCCCAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGCTCTCTTCAATACTCGAACCAAAAAAGACTTAAGCCCAGGAA  481

seq1  CACTAAAGAAGTTTGCAAATACAATGACTCTGTAAACAGTGTAAGTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAGAAGTTTGCAAATACAATGACTCTGTAAACAGTGTAAGTTTGT  531

seq1  TTTCTACCATTAGTCTCAATCAAGGAATCCACATGCAGAAGAAAAAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCATTAGTCTCAATCAAGGAATCCACATGCAGAAGAAAAAACAC  581

seq1  AACCGAAATGCAGAATTTGAGAAGGTTTTTGTTTCTAAACATAAAGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAAATGCAGAATTTGAGAAGGTTTTTGTTTCTAAACATAAAGTCAT  631

seq1  GGTGAAACGAAACAATACTGGAGTGAACCCTTACAAATGTAGTGAATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAACGAAACAATACTGGAGTGAACCCTTACAAATGTAGTGAATTTG  681

seq1  ACAAATATCTTACCCAGAGAGAAAAACTTCAAAGTCAGCAGAGAATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATCTTACCCAGAGAGAAAAACTTCAAAGTCAGCAGAGAATTTAT  731

seq1  CATGGAAAGAAACCTTACAAAAGTAGTAAAAGTGACAAATGCTTTACCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAGAAACCTTACAAAAGTAGTAAAAGTGACAAATGCTTTACCCA  781

seq1  TCAGATCCATCTTAGTATCCATCAGGGAATTCATGCAGAAGAGAAAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCCATCTTAGTATCCATCAGGGAATTCATGCAGAAGAGAAAATTT  831

seq1  ACAAATGTAGTGAATGTGACAAATGCTTTACCCACAAATCCCATCTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTAGTGAATGTGACAAATGCTTTACCCACAAATCCCATCTTAAT  881

seq1  ATTCATCAGAGAATTCATACAGGAGAGAACCCTTACAAATGCAGTGAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGAGAATTCATACAGGAGAGAACCCTTACAAATGCAGTGAATG  931

seq1  TGACAAATGTTTTAAACACAAATTCAGTTTTAGTATGCATCAGAGAATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGTTTTAAACACAAATTCAGTTTTAGTATGCATCAGAGAATTC  981

seq1  ATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTAAT  1031

seq1  GAAAAAGGCAGCCTGAGAATTC  1072
      ||||||||||||||||||||||
seq2  GAAAAAGGCAGCCTGAGAATTC  1053

seq1: chr4_145065611_145066680
seq2: B6Ng01-020G12.g_67_1121

seq1  GAATTCTTCTGTTTACAGATGATGAAACTGAGGGGTAAAGCTGACCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTTTACAGATGATGAAACTGAGGGGTAAAGCTGACCTTGG  50

seq1  TGGTGCACGTCTTTAATCCCAGTGCTCAGGTGGAGGGTGCATCTTTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCACGTCTTTAATCCCAGTGCTCAGGTGGAGGGTGCATCTTTGAGT  100

seq1  TCAAGGCCAGCCTGGTATACAGGGTGAATTCCTGGACAGTCAGGACTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCAGCCTGGTATACAGGGTGAATTCCTGGACAGTCAGGACTACA  150

seq1  CAGAGAAATCATGTCTCAAAAAACAAAACAAAAATACTTCGTTTTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATCATGTCTCAAAAAACAAAACAAAAATACTTCGTTTTTATAT  200

seq1  ATGTGTGATGTTTCTTTGCATATAAGTCAGTGTACCATATCCGTGCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGATGTTTCTTTGCATATAAGTCAGTGTACCATATCCGTGCCTGG  250

seq1  GACTCACAGAGGCTGAAAGAGAGCATCAGTTCCCTAGGAACTGCAGTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACAGAGGCTGAAAGAGAGCATCAGTTCCCTAGGAACTGCAGTAAT  300

seq1  AGTTGGTGGTCATGAGCCACTATGTGGGTACCTGAGAACAACCTTTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTGGTCATGAGCCACTATGTGGGTACCTGAGAACAACCTTTGTTC  350

seq1  CCCTGAAGAGGAGCCAGTGCTCTTAACCACCAAGCCATCTATCCAGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGAGGAGCCAGTGCTCTTAACCACCAAGCCATCTATCCAGATCC  400

seq1  TAGTTCTTCTCTTTAAAATGCGGCTGGCAAAAAGCATCCTTGCTTCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTCTCTTTAAAATGCGGCTGGCAAAAAGCATCCTTGCTTCAAGT  450

seq1  GGTGGAGAATTAATACAACTTTTTATTTCTAAAGCATTTGGAAAAGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAATTAATACAACTTTTTATTTCTAAAGCATTTGGAAAAGTGCC  500

seq1  TGGCCTTTCTTCTTGATGCTCAGGAGCACAGTATTAGCTGTGAGGTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTCTTCTTGATGCTCAGGAGCACAGTATTAGCTGTGAGGTGGGT  550

seq1  TCTGATCACTGCATACTGTACACAGCTGGTGCTTTGTAAATCAAAGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCACTGCATACTGTACACAGCTGGTGCTTTGTAAATCAAAGCTGG  600

seq1  GGGCAGTGACCCCAGAATCCTGGACCACAGTCATTCTTTGCCTCCTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGACCCCAGAATCCTGGACCACAGTCATTCTTTGCCTCCTTTGT  650

seq1  GTTTCAAGAGAGGGTCTCATGTAGCTCAGGCTGGTCTT-CCTCAAACTGA  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTTTCAAGAGAGGGTCTCATGTAGCTCAGGCTGGTCTTCCCTCAAACTGA  700

seq1  CTATGTCACAGAGGATGTGCCTGACTCTTTAATCCTTTGGCTTCCACCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCACAGAGGATGTGCCTGACTCTTTAATCCTTTGGCTTCCACCTC  750

seq1  ACAAATTCTGAGGGGACTAAAAGCGTGTACCATCTCAACATGTGACATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCTGAGGGGACTAAAAGCGTGTACCATCTCAACATGTGACATGG  800

seq1  GTCTGAGCTC-TGAATGCAAGGTTTGTGGTACCAGGCTAGCACATTCCCA  848
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  GTCTGAGCTCTTGAATGCAAAGTTTGTGGTACCAGGCTAGCACATTCCCA  850

seq1  GCCTGAGTTACTACTTTCCTTTTAAACATTTTTCTTATTTTATTGAAAAC  898
      ||||||||||||||||||||||| |||| |||||||||||||||| ||||
seq2  GCCTGAGTTACTACTTTCCTTTT-AACA-TTTTCTTATTTTATTG-AAAC  897

seq1  ATATTATTTTTTGTATAAGGGTGTTTTCGCCTACATGTGTATCTGTGCCC  948
      ||| |||||||||||||| |||||||||| ||||||||||||||||| ||
seq2  ATA-TATTTTTTGTATAA-GGTGTTTTCG-CTACATGTGTATCTGTG-CC  943

seq1  CATCACATATATGCCTGGTGCCCACAGAGGTCAGAAGAGGACATTGTACT  998
      |||| ||||||||||||||| ||||||||||||| ||| |||||||||||
seq2  CATC-CATATATGCCTGGTG-CCACAGAGGTCAG-AGA-GACATTGTACT  989

seq1  TCCTGGAATTGGAGTTTCAGTTCTGATCCACCATGTGAGTCCTGGGAATT  1048
      |||| ||||||||||||||||| ||||||||||||||||| ||||||  |
seq2  TCCT-GAATTGGAGTTTCAGTT-TGATCCACCATGTGAGT-CTGGGA--T  1034

seq1  CAACCCTGCTCCACAAGGGCAG  1070
      | |||||||||  |||||||||
seq2  C-ACCCTGCTCTCCAAGGGCAG  1055