BAC Information

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BAC

Clone NameB6Ng01-020I02
Chromosome4 (Build37)
Map Location 5,474,559 - 5,660,110
singlet/doubletdoublet
Overlap gene1700012H17Rik
Upstream geneImpad1, LOC100039338
Downstream geneLOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020I02.bB6Ng01-020I02.g
ACCDH853283DH853284
length1,0371,030
definitionDH853283|Mus musculus domesticus DNA, BAC clone: B6Ng01-020I02, 5' end.DH853284|Mus musculus domesticus DNA, BAC clone: B6Ng01-020I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,659,055 - 5,660,110)(5,474,559 - 5,475,598)
sequence
gaattctttttagagaatgaactatctatttcttcttacggaaacctttt
tagaataaacatctaaaaccttaactgcttttgcaaaagaatgccctatc
tgtcccttcttgttataaagctctggcgggcacaagagtctcatcacaga
agctgacttgccctggttcctgaggcgaccttgctcaaggtcagctgaga
gggcccagggggcaccccacctgactgtgctggggaacctgagctctgag
tcattctcttggcaaagagctgttctgggaagagaaaagccagaggtgct
gctgtgaaaggaggctgagtcaccatagggaacacagggatctttatgga
ggaaacattgaatccaaaggagagaggaagtttgagaaaaactcacatgg
tgtttgagtcaggatcagttaacaccaaaaagtgtgcaagggctgaattt
actctcagtgatttctcaagcatctagtaggcacagtatgaaaaaattac
aatctacccacagaagttttgaagacattaacttttcaaagagaaactaa
ctttattagttacttaagtttgattaagatagcaactaagtaaaagcaaa
gggaactataagtttgttttctgaagctgcattctctagagggcctctca
tctcagtaagtcgtaccctcatctcttttacaatggcacaggccacatgt
tcagggattctcttgttctaggataattaaactaaacaggcattcgggga
aaagagcacagtaggttcattttgttttaatcatttcatgccttcatttc
cctttttagtttctttgaacagggagccatttcaagcacctagtgtcgac
tcaaaaacaacatcattctaagtacactgttgagagcactgaaaatgctg
gtgatggaaatacatatgtaactatagggatgatacctagatatgcacta
gctatataggactgaggtagaccatcagggtatactataagtgcacagct
agatgggaacaaagtacggcgaccatcgagatgcaaa

gaattcagtactctgtagttgtgttcctcagattgtttcagctttcccct
ggactatatattggtgggcatctcaaatgtggggacataatgttttctct
tctggattttctaaggagagaagctgctgcgatcatctttgtcttctatt
tgaatcatcttcttcatgaagtacagttttcaagtacataattagaacct
aaaacttgtaatatagatgtgctatgggggctgtcactgttttccagctg
tcagggtagaggcatgcatgcacaagtctctgtgaacaaagctgcccaga
atttttacatgtattcatctgtatgtatgttacactaacttgagttcaca
ctctctgcaacacagatcattggcgtgtctccccttacatattttagatt
tctacttctcattgagaaatctggattccaacatgtaaaacatttactgc
actcttcaattccaatatgaatccacagccactttggagctataacctgt
gtcctcacagaaaacacttttatcagctgagtaatgtgcttcttcttgac
ttcactctgttcttacttgagacagtccccatcctcactcagcatcctgc
acacagcatcagctttacattttggagaaaaaaagaagcaagagacaatt
tactagtaaactgaaacattttgttgttttacttaaacatgagaaaaata
aagcaggcctcaagcgtcacacttttaataatcactataggaacatcgct
tcagagaaaggaacaatgcaccatctagaacaaatcatttcttgtacttc
gcagagaagtgtagagctgaagtgctgagcatatcggtttttttgaagct
caactcgcagttgtcactgtgtcagcagacagctacacacagagacacga
tccctgaggtggaggggtcttgatagacacagaagaaagatggacacata
gtctgtgtaattggtcttctcgactcaaggcagcttcatatcaacagact
ataatgtgcttttaggtagcatatcactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_5659055_5660110
seq2: B6Ng01-020I02.b_46_1082 (reverse)

seq1  TTTGCATCTCGATGGTCCGGCCCGTAACCTTTGTTCCCATCTAAGCTTGT  50
      |||||||||||||||||    |||||  |||||||||||||| ||| |||
seq2  TTTGCATCTCGATGGTC---GCCGTA--CTTTGTTCCCATCT-AGC-TGT  43

seq1  GCACTGTATAGGTTAATACCCTGATGGTCCTTAACCTCAGTTCCTATATA  100
      ||||| |||||    ||||||||||||||    ||||||| |||||||| 
seq2  GCACT-TATAG---TATACCCTGATGGTC---TACCTCAG-TCCTATAT-  84

seq1  AGCTAGTGCATTATCTAGGTTATCATCCCTATAGTTACATATGTATTTCC  150
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  AGCTAGTGCA-TATCTAGG-TATCATCCCTATAGTTACATATGTATTTCC  132

seq1  ATCACCAGCATTTTTCAGTGCTCTCAACAGTGTACTTAGAATGATGTTGT  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAGCA-TTTTCAGTGCTCTCAACAGTGTACTTAGAATGATGTTGT  181

seq1  TTTTGAGTCGACACTAGGTGCTTGAAATGGCTCCCTGTTCAAAGAAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTCGACACTAGGTGCTTGAAATGGCTCCCTGTTCAAAGAAACTA  231

seq1  AAAAGGGAAATGAAGGCATGAAATGATTAAAACAAAATGAACCTACTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAAATGAAGGCATGAAATGATTAAAACAAAATGAACCTACTGTG  281

seq1  CTCTTTTCCCCGAATGCCTGTTTAGTTTAATTATCCTAGAACAAGAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCCCCGAATGCCTGTTTAGTTTAATTATCCTAGAACAAGAGAAT  331

seq1  CCCTGAACATGTGGCCTGTGCCATTGTAAAAGAGATGAGGGTACGACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACATGTGGCCTGTGCCATTGTAAAAGAGATGAGGGTACGACTTA  381

seq1  CTGAGATGAGAGGCCCTCTAGAGAATGCAGCTTCAGAAAACAAACTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGAGAGGCCCTCTAGAGAATGCAGCTTCAGAAAACAAACTTATA  431

seq1  GTTCCCTTTGCTTTTACTTAGTTGCTATCTTAATCAAACTTAAGTAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTTGCTTTTACTTAGTTGCTATCTTAATCAAACTTAAGTAACTA  481

seq1  ATAAAGTTAGTTTCTCTTTGAAAAGTTAATGTCTTCAAAACTTCTGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTAGTTTCTCTTTGAAAAGTTAATGTCTTCAAAACTTCTGTGGG  531

seq1  TAGATTGTAATTTTTTCATACTGTGCCTACTAGATGCTTGAGAAATCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGTAATTTTTTCATACTGTGCCTACTAGATGCTTGAGAAATCACT  581

seq1  GAGAGTAAATTCAGCCCTTGCACACTTTTTGGTGTTAACTGATCCTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAAATTCAGCCCTTGCACACTTTTTGGTGTTAACTGATCCTGACT  631

seq1  CAAACACCATGTGAGTTTTTCTCAAACTTCCTCTCTCCTTTGGATTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACCATGTGAGTTTTTCTCAAACTTCCTCTCTCCTTTGGATTCAAT  681

seq1  GTTTCCTCCATAAAGATCCCTGTGTTCCCTATGGTGACTCAGCCTCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCCATAAAGATCCCTGTGTTCCCTATGGTGACTCAGCCTCCTTT  731

seq1  CACAGCAGCACCTCTGGCTTTTCTCTTCCCAGAACAGCTCTTTGCCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGCACCTCTGGCTTTTCTCTTCCCAGAACAGCTCTTTGCCAAGA  781

seq1  GAATGACTCAGAGCTCAGGTTCCCCAGCACAGTCAGGTGGGGTGCCCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACTCAGAGCTCAGGTTCCCCAGCACAGTCAGGTGGGGTGCCCCCT  831

seq1  GGGCCCTCTCAGCTGACCTTGAGCAAGGTCGCCTCAGGAACCAGGGCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTCTCAGCTGACCTTGAGCAAGGTCGCCTCAGGAACCAGGGCAAG  881

seq1  TCAGCTTCTGTGATGAGACTCTTGTGCCCGCCAGAGCTTTATAACAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCTGTGATGAGACTCTTGTGCCCGCCAGAGCTTTATAACAAGAA  931

seq1  GGGACAGATAGGGCATTCTTTTGCAAAAGCAGTTAAGGTTTTAGATGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGATAGGGCATTCTTTTGCAAAAGCAGTTAAGGTTTTAGATGTTT  981

seq1  ATTCTAAAAAGGTTTCCGTAAGAAGAAATAGATAGTTCATTCTCTAAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAAAGGTTTCCGTAAGAAGAAATAGATAGTTCATTCTCTAAAAA  1031

seq1  GAATTC  1056
      ||||||
seq2  GAATTC  1037


seq1: chr4_5474559_5475598
seq2: B6Ng01-020I02.g_66_1095

seq1  GAATTCAGTACTCTGTAGTTGTGTTCCTCAGATTGTTTCAGCTTTCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACTCTGTAGTTGTGTTCCTCAGATTGTTTCAGCTTTCCCCT  50

seq1  GGACTATATATTGGTGGGCATCTCAAATGTGGGGACATAATGTTTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATATATTGGTGGGCATCTCAAATGTGGGGACATAATGTTTTCTCT  100

seq1  TCTGGATTTTCTAAGGAGAGAAGCTGCTGCGATCATCTTTGTCTTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTTTCTAAGGAGAGAAGCTGCTGCGATCATCTTTGTCTTCTATT  150

seq1  TGAATCATCTTCTTCATGAAGTACAGTTTTCAAGTACATAATTAGAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATCTTCTTCATGAAGTACAGTTTTCAAGTACATAATTAGAACCT  200

seq1  AAAACTTGTAATATAGATGTGCTATGGGGGCTGTCACTGTTTTCCAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGTAATATAGATGTGCTATGGGGGCTGTCACTGTTTTCCAGCTG  250

seq1  TCAGGGTAGAGGCATGCATGCACAAGTCTCTGTGAACAAAGCTGCCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTAGAGGCATGCATGCACAAGTCTCTGTGAACAAAGCTGCCCAGA  300

seq1  ATTTTTACATGTATTCATCTGTATGTATGTTACACTAACTTGAGTTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACATGTATTCATCTGTATGTATGTTACACTAACTTGAGTTCACA  350

seq1  CTCTCTGCAACACAGATCATTGGCGTGTCTCCCCTTACATATTTTAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCAACACAGATCATTGGCGTGTCTCCCCTTACATATTTTAGATT  400

seq1  TCTACTTCTCATTGAGAAATCTGGATTCCAACATGTAAAACATTTACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCTCATTGAGAAATCTGGATTCCAACATGTAAAACATTTACTGC  450

seq1  ACTCTTCAATTCCAATATGAATCCACAGCCACTTTGGAGCTATAACCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCAATTCCAATATGAATCCACAGCCACTTTGGAGCTATAACCTGT  500

seq1  GTCCTCACAGAAAACACTTTTATCAGCTGAGTAATGTGCTTCTTCTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACAGAAAACACTTTTATCAGCTGAGTAATGTGCTTCTTCTTGAC  550

seq1  TTCACTCTGTTCTTACTTGAGACAGTCCCCATCCTCACTCAGCATCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTGTTCTTACTTGAGACAGTCCCCATCCTCACTCAGCATCCTGC  600

seq1  ACACAGCATCAGCTTTACATTTTGGAGAAAAAAAGAAGCAAGAGACAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCATCAGCTTTACATTTTGGAGAAAAAAAGAAGCAAGAGACAATT  650

seq1  TACTAGTAAACTGAAACATTTTGTTGTTTTACTTAAACATGAGAAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTAAACTGAAACATTTTGTTGTTTTACTTAAACATGAGAAAAATA  700

seq1  AAGCAGGCCTCAAGCGTCACACTTTTAATAATCACTATAGGAAACATCGC  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGCAGGCCTCAAGCGTCACACTTTTAATAATCACTATAGG-AACATCGC  749

seq1  TTCAGAGAAAGGAACAATGCACCATCTAGAACAAAATCATTTCTTGTACT  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCAGAGAAAGGAACAATGCACCATCTAGAAC-AAATCATTTCTTGTACT  798

seq1  TCGCAGAGAAGTGTAGAGCTGAAGTGCTGAGCATATCGGTTTTTTTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGAGAAGTGTAGAGCTGAAGTGCTGAGCATATCGGTTTTTTTGAAG  848

seq1  CTCAACCCGCAGTTGTCACTGTGTCAGCAGACAAGCTACACACAGAGACA  900
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCAACTCGCAGTTGTCACTGTGTCAGCAGAC-AGCTACACACAGAGACA  897

seq1  CGATCCCTGAGGGTGGAGGGGTCTTGATAGACACCAGAAGAAAGGATGGA  950
      |||||||||| |||||||||||||||||||||| ||||||||| ||||||
seq2  CGATCCCTGA-GGTGGAGGGGTCTTGATAGACA-CAGAAGAAA-GATGGA  944

seq1  CACATAGTCTGTGTAATTTGTCTTCTCGACTCAAGGCAGCTTCATATTCA  1000
      |||||||||||||||||| ||||||||||||||||||||||||||||   
seq2  CACATAGTCTGTGTAATTGGTCTTCTCGACTCAAGGCAGCTTCATAT--C  992

seq1  AACAGACTATAATGTGCTTTTAGGTAGCAATAATCACTGA  1040
      |||||||||||||||||||||||||||||   ||||||||
seq2  AACAGACTATAATGTGCTTTTAGGTAGCA--TATCACTGA  1030


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