BAC Information

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BAC

Clone NameB6Ng01-020N05
Chromosome4 (Build37)
Map Location 75,523,223 - 75,664,462
singlet/doubletdoublet
Overlap geneLOC667845, Ptprd
Upstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N05.bB6Ng01-020N05.g
ACCDH853512DH853513
length1,0671,026
definitionDH853512|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N05, 5' end.DH853513|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,523,223 - 75,524,303)(75,663,427 - 75,664,462)
sequence
gaattccatcctcacctatagctaggaatgagagcgaggaaacatccaag
gactgcatgattcaaataaggcaatcatcctttccccggggtaataggct
ccctgaggagaaagagattacagattactaatagttcatatggcagaaaa
ttgaaaatttgaacaaaataaatatgttctttcatttctagagtttacaa
ttgactataaggtaggcggaaacagaattattaggcagccatcaaatagg
atggtgatgttaaattacataatcaatttaatattctgggtcagttatca
cagagaactgctgtttctgtgccactaatttagtgttaactcatttgcaa
ggctttgaatttttattttttcaactttgggggaagatatgacatagttc
attattctattaatatctgtataaagcatcccagactagctaacctttct
cctttagccatgtgaggatggaaatgagaacataatcacccctgttgagc
tgcctgagcaaagttggaccaagccatcaaatgaagctggtgacattttg
tagaatcaatacttgatttaaagtagactttgagaagaaactgaacagaa
tattggccacaacccttacttgcgtggatgtagatgtgttagtgtgaatt
tgcacatgcatctgtctaaagtgagggcttcagagacatatttgaaggag
ttgttatttcgaaagatttttgttggaatgacttctgcttctgtagacag
tgatgacatggcatgttctttcttatatagccatagcaaataagcttccc
cttattacacaactggtagcaagcagttctctgaaaccctatattgagag
gtatccaaagaagaaataaagcttagccaaaagattccttcttgataaat
tctctcactccagaaaggctctgaagtatacaggagacgttctaggagag
ctagaaaagtacccaaggagctaaagggatctgcaacctatagatggaca
cattatgactaccagtacccctgagctcctgacctagctgcatatgttac
aaagatgcctaattggc
gaattctttcagtggtagtttgtaattctctatattactgccatggacaa
gaaggaagcattgaatttttattttctgatccagaaaacaaggtattgat
taaacattaacaaaagtcttatttttcagttttgaagtttatctgttttt
tatgagaaaggataaatgatttaacacaaagcaaaagataatgaaaaaaa
aaaccttcctaataaatggcaagcaagaacaatactgaaaggctaaggtg
cattttgactccatgatgcaaagtaaaatagactgatgtttccagtccca
ttagaacattctacattttatgaacaattaataccattgatagagtccgc
taatgtcttttacaaacctcattatggtttgtatctgctagtttccctta
aagtgttgtatgttccttgctttaatgatatgaatcacagtaatcatgaa
atcaagacatccattcatcattgctcttcccttttacagtctactaatgt
tctgttttttaagaatgggcaggtctccattatcaagtagaaacagaaaa
gtaagcaacacatgtagggacttgtgctctgttttgttatctctgccaaa
aagtagatgagttccaaatgatagagctggacatgttgttacataataaa
tagaggggcagaaatggattgccttgcagcaataacaaagcaactcccta
tcttttataattccaagtgaaagtagaaacaatttccttgaagggaaaac
aaatactgctagcttgctgaggctgggtagacaaaggctgttctgacccc
actcagtggatacatgtgggagagagatgtgctccttttcagttaagact
taaaacgcatgctttgcccttcatcggtgagggtgcatacagatcaccaa
taattagcagcggtgcatagcctattattagtacccaacctgggtacctt
caggaaaggaaagatactatatgaatgggtttatatgcacgtggatttat
ttaataaatattatttttctcaatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_75523223_75524303
seq2: B6Ng01-020N05.b_47_1113

seq1  GAATTCCATCCTCACCTATAGCTAGGAATGAGAGCGAGGAAACATCCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCTCACCTATAGCTAGGAATGAGAGCGAGGAAACATCCAAG  50

seq1  GACTGCATGATTCAAATAAGGCAATCATCCTTTCCCCGGGGTAATAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATGATTCAAATAAGGCAATCATCCTTTCCCCGGGGTAATAGGCT  100

seq1  CCCTGAGGAGAAAGAGATTACAGATTACTAATAGTTCATATGGCAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGGAGAAAGAGATTACAGATTACTAATAGTTCATATGGCAGAAAA  150

seq1  TTGAAAATTTGAACAAAATAAATATGTTCTTTCATTTCTAGAGTTTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTTGAACAAAATAAATATGTTCTTTCATTTCTAGAGTTTACAA  200

seq1  TTGACTATAAGGTAGGCGGAAACAGAATTATTAGGCAGCCATCAAATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTATAAGGTAGGCGGAAACAGAATTATTAGGCAGCCATCAAATAGG  250

seq1  ATGGTGATGTTAAATTACATAATCAATTTAATATTCTGGGTCAGTTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGATGTTAAATTACATAATCAATTTAATATTCTGGGTCAGTTATCA  300

seq1  CAGAGAACTGCTGTTTCTGTGCCACTAATTTAGTGTTAACTCATTTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACTGCTGTTTCTGTGCCACTAATTTAGTGTTAACTCATTTGCAA  350

seq1  GGCTTTGAATTTTTATTTTTTCAACTTTGGGGGAAGATATGACATAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGAATTTTTATTTTTTCAACTTTGGGGGAAGATATGACATAGTTC  400

seq1  ATTATTCTATTAATATCTGTATAAAGCATCCCAGACTAGCTAACCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTATTAATATCTGTATAAAGCATCCCAGACTAGCTAACCTTTCT  450

seq1  CCTTTAGCCATGTGAGGATGGAAATGAGAACATAATCACCCCTGTTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCCATGTGAGGATGGAAATGAGAACATAATCACCCCTGTTGAGC  500

seq1  TGCCTGAGCAAAGTTGGACCAAGCCATCAAATGAAGCTGGTGACATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGCAAAGTTGGACCAAGCCATCAAATGAAGCTGGTGACATTTTG  550

seq1  TAGAATCAATACTTGATTTAAAGTAGACTTTGAGAAGAAACTGAACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCAATACTTGATTTAAAGTAGACTTTGAGAAGAAACTGAACAGAA  600

seq1  TATTGGCCACAACCCTTACTTGCGTGGATGTAGATGTGTTAGTGTGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCCACAACCCTTACTTGCGTGGATGTAGATGTGTTAGTGTGAATT  650

seq1  TGCACATGCATCTGTCTAAAGTGAGGGCTTCAGAGACATATTTGAAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGCATCTGTCTAAAGTGAGGGCTTCAGAGACATATTTGAAGGAG  700

seq1  TTGTTATTTCGAAAGATTTTTGTTGGAATGACTTCTGCTTCTGTAGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTTCGAAAGATTTTTGTTGGAATGACTTCTGCTTCTGTAGACAG  750

seq1  TGATGACATGGCATGTTCTTTCTTATATAGCCATAGCAAATAAGCTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACATGGCATGTTCTTTCTTATATAGCCATAGCAAATAAGCTTCCC  800

seq1  CTTATTACACAACTGGTAGCAAGCAGTTCTCTGAAACCCTATATTGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTACACAACTGGTAGCAAGCAGTTCTCTGAAACCCTATATTGAGAG  850

seq1  GTATCCAAAGAAGAAATAAGGCTTAGCCAAAAAGATTCCTTCTTGATAAA  900
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  GTATCCAAAGAAGAAATAAAGCTTAGCC-AAAAGATTCCTTCTTGATAAA  899

seq1  TTCTCTCACTCCAGAAAGGGCTCTGAAGGTATACAGGAGAACGTTCTAGG  950
      ||||||||||||||||| ||||||||| ||||||||||| ||||||||||
seq2  TTCTCTCACTCCAGAAA-GGCTCTGAA-GTATACAGGAG-ACGTTCTAGG  946

seq1  AGGAGCTAGAAAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAG  1000
      | ||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  A-GAGCTAG-AAAAGTACCCAAGGAGCTAAAGGGATCTGCAA-CCTATAG  993

seq1  ATGGAACAACATTATGAACTAACCAGTACCCCTGAGCTCTTGACTCTAGC  1050
      |||||   |||||||| ||| |||||||||||||||||| |||| |||||
seq2  ATGGA--CACATTATG-ACT-ACCAGTACCCCTGAGCTCCTGAC-CTAGC  1038

seq1  TGCATATGTATCAAAAGATGGCCTAGTTGGC  1081
      ||||||||| |  |||||| ||||| |||||
seq2  TGCATATGT-TACAAAGAT-GCCTAATTGGC  1067

seq1: chr4_75663427_75664462
seq2: B6Ng01-020N05.g_66_1091 (reverse)

seq1  TGATTGGAGAAAAATAATTATTTATTAAATATAATCCACGTGCATTATTA  50
      ||||| ||||||||||| ||||||||||||| |||||||||||||   ||
seq2  TGATT-GAGAAAAATAA-TATTTATTAAATA-AATCCACGTGCAT--ATA  45

seq1  AACCAATTCATATAGGTATCTTTCCTTTCCTGAAGGTACCCAGGTTTGGG  100
      |||| ||||||||| ||||||||||||||||||||||||||||| |||||
seq2  AACCCATTCATATA-GTATCTTTCCTTTCCTGAAGGTACCCAGG-TTGGG  93

seq1  TACTAAATAAATAGGCTATGCACCGCTTGCTAA-TATTGGTGATTCTGTA  149
      ||||||   ||||||||||||||||| |||||| ||||||||| ||||||
seq2  TACTAA--TAATAGGCTATGCACCGC-TGCTAATTATTGGTGA-TCTGTA  139

seq1  TGCACCCTCAACGATGAAGGGCAAAGCATGCGTTTTAAGTCTTAACTGAA  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCTCACCGATGAAGGGCAAAGCATGCGTTTTAAGTCTTAACTGAA  189

seq1  AAGGAGCACATCTCTCTCCCACATGTATCCACTGAGTGGGGTCAGAACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCACATCTCTCTCCCACATGTATCCACTGAGTGGGGTCAGAACAG  239

seq1  CCTTTGTCTACCCAGCCTCAGCAAGCTAGCAGTATTTGTTTTCCCTTCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCTACCCAGCCTCAGCAAGCTAGCAGTATTTGTTTTCCCTTCAA  289

seq1  GGAAATTGTTTCTACTTTCACTTGGAATTATAAAAGATAGGGAGTTGCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGTTTCTACTTTCACTTGGAATTATAAAAGATAGGGAGTTGCTT  339

seq1  TGTTATTGCTGCAAGGCAATCCATTTCTGCCCCTCTATTTATTATGTAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGCTGCAAGGCAATCCATTTCTGCCCCTCTATTTATTATGTAAC  389

seq1  AACATGTCCAGCTCTATCATTTGGAACTCATCTACTTTTTGGCAGAGATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTCCAGCTCTATCATTTGGAACTCATCTACTTTTTGGCAGAGATA  439

seq1  ACAAAACAGAGCACAAGTCCCTACATGTGTTGCTTACTTTTCTGTTTCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGAGCACAAGTCCCTACATGTGTTGCTTACTTTTCTGTTTCTA  489

seq1  CTTGATAATGGAGACCTGCCCATTCTTAAAAAACAGAACATTAGTAGACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAATGGAGACCTGCCCATTCTTAAAAAACAGAACATTAGTAGACT  539

seq1  GTAAAAGGGAAGAGCAATGATGAATGGATGTCTTGATTTCATGATTACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGGGAAGAGCAATGATGAATGGATGTCTTGATTTCATGATTACTG  589

seq1  TGATTCATATCATTAAAGCAAGGAACATACAACACTTTAAGGGAAACTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCATATCATTAAAGCAAGGAACATACAACACTTTAAGGGAAACTAG  639

seq1  CAGATACAAACCATAATGAGGTTTGTAAAAGACATTAGCGGACTCTATCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAAACCATAATGAGGTTTGTAAAAGACATTAGCGGACTCTATCA  689

seq1  ATGGTATTAATTGTTCATAAAATGTAGAATGTTCTAATGGGACTGGAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATTAATTGTTCATAAAATGTAGAATGTTCTAATGGGACTGGAAAC  739

seq1  ATCAGTCTATTTTACTTTGCATCATGGAGTCAAAATGCACCTTAGCCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCTATTTTACTTTGCATCATGGAGTCAAAATGCACCTTAGCCTTT  789

seq1  CAGTATTGTTCTTGCTTGCCATTTATTAGGAAGGTTTTTTTTTTCATTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGTTCTTGCTTGCCATTTATTAGGAAGGTTTTTTTTTTCATTAT  839

seq1  CTTTTGCTTTGTGTTAAATCATTTATCCTTTCTCATAAAAAACAGATAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTTTGTGTTAAATCATTTATCCTTTCTCATAAAAAACAGATAAA  889

seq1  CTTCAAAACTGAAAAATAAGACTTTTGTTAATGTTTAATCAATACCTTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAACTGAAAAATAAGACTTTTGTTAATGTTTAATCAATACCTTGT  939

seq1  TTTCTGGATCAGAAAATAAAAATTCAATGCTTCCTTCTTGTCCATGGCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGATCAGAAAATAAAAATTCAATGCTTCCTTCTTGTCCATGGCAG  989

seq1  TAATATAGAGAATTACAAACTACCACTGAAAGAATTC  1036
      |||||||||||||||||||||||||||||||||||||
seq2  TAATATAGAGAATTACAAACTACCACTGAAAGAATTC  1026