BAC Information

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BAC

Clone NameB6Ng01-020N20
Chromosome4 (Build37)
Map Location 117,674,715 - 117,821,361
singlet/doubletdoublet
Overlap geneSt3gal3, Jmjd2a
Upstream geneHectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn
Downstream genePtprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N20.bB6Ng01-020N20.g
ACCDH853539DH853540
length1,1091,045
definitionDH853539|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N20, 5' end.DH853540|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,674,715 - 117,675,844)(117,820,307 - 117,821,361)
sequence
gaattcatttgctcagtgtccaacttactggaatgatctggctcttacac
agccctaggagatgtcatctgacttcgtgttccataatgctcagacttct
ccaagttcacacagctgttacatgagaaaggcatgaggacctgaggacgc
agcctaacactcatgtctttccagcacagtgggtactacaggatgctgct
atcattttccttctgcagttcttcactgagagtgcaggcgagaccgtgca
ggagttctcacacctgcgctctcagtctttggagaacaaaaattaaaatt
aactcatacacgtgtatgctgtgtagatgtttcctacagcggcagatggg
aaccagcacagagacccacagttgaacagcgtgcagagagaaccctggta
ccccacaccatttagccctaaatgggacatctccaccaaatcccactcct
tagagctcagggaaccctgaggtagaggaagcagaatgattataaaaacc
agaggggatggaggacaccaaagaacaagaccgtctacacacagtagggt
cgatgcacgtatgaactcacagagacgtccttaagtcgattttggggaaa
tatcttatcaaagcgacaagagaagaaactaagatagaaaatgtcatcag
aaactaacacccatgtaggcaaattttaaaagccactatggaagacaact
tgccaataacttccaaaattaaaaatccttataatgtttgatctggaaat
agcactttattctacatagtcttgcatgtgtgaaaaatgatatacaagaa
aggttattcataaagtaatgttttttaaagtggagtttggaaaccatcca
ccaaaaggaagtagtacttaattaaatacggaacaccttctggacagaac
actatgcgagaaagatgagaggactctggcctggtgtgcatgcctggcat
ccagacatgggaggtgggtttagagttcaggcagcctcagctaataagtt
ctatgcagctgtgctacacgagcactgtttcaagcgaagaacaacagagg
gaaattgcttagctttcatgaatatggggacaagtttatcttcgacttaa
ccctagaaa
gaattcaatgagatcatggcccaacaggcccctcactgtgctgtgtgtat
gatcttccagacctaccatcaggtgagcgtgctttgctgccgccagatat
cctgggccagcaattggaggaagcggggtttaattgtgggtgcgaggttt
gtcactgcttgtcttaggaggcctttcccctagtatcctcgttctgttaa
tgctcgcgtggctatgccaggcagataacacttaagaatgctttgatctg
gtgacccttgtttgtgacacagatctcgatgtttgcagagcatgtttctt
cttatctttctggaccagggctctttcttctcgatcctatgcagtcctga
tcaattagggtacaagaatgcagtttctttcccatttgacattagccttg
ggccaggagcccggtcttctcatgccattttcttttttcccctcctcatt
gtcatagtgagtgctgcctgagcagaaggcagctggggccagggaggcgg
gagggcagaggctctgccacagtgaaggctgggctcaactgtgggcttcc
catgccggtccactgatgacctcacagtgtggatcgctttgggtcgagct
ccagaaggtcagacaggaattcacagcagtcaggtgccgagtaaccaact
caggctcaaatgggtcctacgccgtgtggcagtaggtaggcagtttccct
atggcagttaaagtggcccagctgccctgagcttggcagggcccaggctc
atgcatgcagaaaggatggcatctagacccacatgctggatcaacagcta
cttctttgtattaactggcagcaaagcagagaactgtttgtgccgtgttt
gtgagggacgtgactgcttgattgttactgtcagcagctctcttagtggg
ggccagagttctttgattgcataggctcagagggtgactcgcttctcggc
tctgtcttggataggatcatggtgcatccatcggctaagccagagatttt
gtagtgaccttatttgccaaaaggacctgaatataatgtcctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_117674715_117675844
seq2: B6Ng01-020N20.b_43_1151

seq1  GAATTCATTTGCTCAGTGTCCAACTTACTGGAATGATCTGGCTCTTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCTCAGTGTCCAACTTACTGGAATGATCTGGCTCTTACAC  50

seq1  AGCCCTAGGAGATGTCATCTGACTTCGTGTTCCATAATGCTCAGACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAGGAGATGTCATCTGACTTCGTGTTCCATAATGCTCAGACTTCT  100

seq1  CCAAGTTCACACAGCTGTTACATGAGAAAGGCATGAGGACCTGAGGACGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTCACACAGCTGTTACATGAGAAAGGCATGAGGACCTGAGGACGC  150

seq1  AGCCTAACACTCATGTCTTTCCAGCACAGTGGGTACTACAGGATGCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAACACTCATGTCTTTCCAGCACAGTGGGTACTACAGGATGCTGCT  200

seq1  ATCATTTTCCTTCTGCAGTTCTTCACTGAGAGTGCAGGCGAGACCGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTCCTTCTGCAGTTCTTCACTGAGAGTGCAGGCGAGACCGTGCA  250

seq1  GGAGTTCTCACACCTGCGCTCTCAGTCTTTGGAGAACAAAAATTAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCTCACACCTGCGCTCTCAGTCTTTGGAGAACAAAAATTAAAATT  300

seq1  AACTCATACACGTGTATGCTGTGTAGATGTTTCCTACAGCGGCAGATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATACACGTGTATGCTGTGTAGATGTTTCCTACAGCGGCAGATGGG  350

seq1  AACCAGCACAGAGACCCACAGTTGAACAGCGTGCAGAGAGAACCCTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCACAGAGACCCACAGTTGAACAGCGTGCAGAGAGAACCCTGGTA  400

seq1  CCCCACACCATTTAGCCCTAAATGGGACATCTCCACCAAATCCCACTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACCATTTAGCCCTAAATGGGACATCTCCACCAAATCCCACTCCT  450

seq1  TAGAGCTCAGGGAACCCTGAGGTAGAGGAAGCAGAATGATTATAAAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTCAGGGAACCCTGAGGTAGAGGAAGCAGAATGATTATAAAAACC  500

seq1  AGAGGGGATGGAGGACACCAAAGAACAAGACCGTCTACACACAGTAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGATGGAGGACACCAAAGAACAAGACCGTCTACACACAGTAGGGT  550

seq1  CGATGCACGTATGAACTCACAGAGACGTCCTTAAGTCGATTTTGGGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCACGTATGAACTCACAGAGACGTCCTTAAGTCGATTTTGGGGAAA  600

seq1  TATCTTATCAAAGCGACAAGAGAAGAAACTAAGATAGAAAATGTCATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATCAAAGCGACAAGAGAAGAAACTAAGATAGAAAATGTCATCAG  650

seq1  AAACTAACACCCATGTAGGCAAATTTTAAAAGCCACTATGGAAGACAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACACCCATGTAGGCAAATTTTAAAAGCCACTATGGAAGACAACT  700

seq1  TGCCAATAACTTCCAAAATTAAAAATCCTTATAATGTTTGATCTGGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATAACTTCCAAAATTAAAAATCCTTATAATGTTTGATCTGGAAAT  750

seq1  AGCACTTTATTCTACATAGTCTTGCATGTGTGAAAAATGATATACAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTATTCTACATAGTCTTGCATGTGTGAAAAATGATATACAAGAA  800

seq1  AGGTTATTCATAAAGTAATGTTTTTTAAAGTGGAGTTTGGAAACCATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTCATAAAGTAATGTTTTTTAAAGTGGAGTTTGGAAACCATCCA  850

seq1  CCAAAAGGAAGTAGTACTTAATTAAAATACGGAACACCTTCTGGACAGAA  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCAAAAGGAAGTAGTACTTAATT-AAATACGGAACACCTTCTGGACAGAA  899

seq1  CACTATGCGAGAAAAGATGAGAGGACTCTGGCCTGGTGTGCATGCCTGGC  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACTATGCGAG-AAAGATGAGAGGACTCTGGCCTGGTGTGCATGCCTGGC  948

seq1  ATCCCAGAACATGGGAGGTGGGTTAAGAGTTCAAGGCCAGCCTCAGCTAC  1000
      || |||| |||||||||||||||| ||||||||  | |||||||||||| 
seq2  AT-CCAG-ACATGGGAGGTGGGTTTAGAGTTCA--GGCAGCCTCAGCTA-  993

seq1  ATAAGTTCTATGCCAGCTGTGCTACACGAGGCACTGTTTCAAAGCAGAGA  1050
      |||||||||||| |||||||||||||||| |||||||||| ||||  |||
seq2  ATAAGTTCTATG-CAGCTGTGCTACACGA-GCACTGTTTC-AAGCGAAGA  1040

seq1  AACAAACAGAGGGGACATTTGCTTTTAGCTATCATGGAATATGGGGACAA  1100
      |   |||||||||   | ||||  |||||| |||| ||||||||||||||
seq2  A--CAACAGAGGG--AAATTGC--TTAGCTTTCAT-GAATATGGGGACAA  1083

seq1  GTTTTATCTTCCGAACTTAACACCTAGAAA  1130
      | |||||||||   ||||||| ||||||||
seq2  G-TTTATCTTC--GACTTAAC-CCTAGAAA  1109

seq1: chr4_117820307_117821361
seq2: B6Ng01-020N20.g_68_1112 (reverse)

seq1  GAAAGAACATTATGTTTCATAGTCCTCTTGGCAAACTATAGTCACTACAA  50
      ||||| |||||||  ||||  ||||| |||||||| ||  ||||||||||
seq2  GAAAGGACATTAT-ATTCA-GGTCCTTTTGGCAAA-TAAGGTCACTACAA  47

seq1  ATATCCTCTGGCTCTGCCGCTGGATGGCACCATGATCCTTATTCCAAGGA  100
      | || ||||||||  |||| ||||| |||||||||||||   ||||| ||
seq2  A-AT-CTCTGGCTTAGCCGATGGAT-GCACCATGATCCT--ATCCAA-GA  91

seq1  CAGAGCCGGGAAGCGCGTCACCCTCTGAGCCTATGCCATTCAAGAAACTC  150
      |||||||| |||||| ||||||||||||||||||| || ||||  |||||
seq2  CAGAGCCGAGAAGCGAGTCACCCTCTGAGCCTATG-CAATCAAAGAACTC  140

seq1  TGGCCCCCACCTAAGAGAGCTGCTGACAGTAACAATCAGGCAGTCACGTC  200
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  TGGCCCCCA-CTAAGAGAGCTGCTGACAGTAACAATCAAGCAGTCACGTC  189

seq1  CCTCACAAACACGGCACAAACAGTTCTCTGCTTTGCTGCCAGTTAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAAACACGGCACAAACAGTTCTCTGCTTTGCTGCCAGTTAATACA  239

seq1  AAGAAGTAGCTGTTGATCCAGCATGTGGGTCTAGATGCCATCC-TTCTGC  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGAAGTAGCTGTTGATCCAGCATGTGGGTCTAGATGCCATCCTTTCTGC  289

seq1  ATGCATGAGCCTGGGCCCTGCCAAGCTCAGGGCAGCTGGGCCACTTTAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGAGCCTGGGCCCTGCCAAGCTCAGGGCAGCTGGGCCACTTTAAC  339

seq1  TGCCATAGGGAAACTGCCTACCTACTGCCACACGGCGTAGGACCCATTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAGGGAAACTGCCTACCTACTGCCACACGGCGTAGGACCCATTTG  389

seq1  AGCCTGAGTTGGTTACTCGGCACCTGACTGCTGTGAATTCCTGTCTGACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGTTGGTTACTCGGCACCTGACTGCTGTGAATTCCTGTCTGACC  439

seq1  TTCTGGAGCTCGACCCAAAGCGATCCACACTGTGAGGTCATCAGTGGACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGCTCGACCCAAAGCGATCCACACTGTGAGGTCATCAGTGGACC  489

seq1  GGCATGGGAAGCCCACAGTTGAGCCCAGCCTTCACTGTGGCAGAGCCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGGAAGCCCACAGTTGAGCCCAGCCTTCACTGTGGCAGAGCCTCT  539

seq1  GCCCTCCCGCCTCCCTGGCCCCAGCTGCCTTCTGCTCAGGCAGCACTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCCGCCTCCCTGGCCCCAGCTGCCTTCTGCTCAGGCAGCACTCAC  589

seq1  TATGACAATGAGGAGGGGAAAAAAGAAAATGGCATGAGAAGACCGGGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAATGAGGAGGGGAAAAAAGAAAATGGCATGAGAAGACCGGGCTC  639

seq1  CTGGCCCAAGGCTAATGTCAAATGGGAAAGAAACTGCATTCTTGTACCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCAAGGCTAATGTCAAATGGGAAAGAAACTGCATTCTTGTACCCT  689

seq1  AATTGATCAGGACTGCATAGGATCGAGAAGAAAGAGCCCTGGTCCAGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATCAGGACTGCATAGGATCGAGAAGAAAGAGCCCTGGTCCAGAAA  739

seq1  GATAAGAAGAAACATGCTCTGCAAACATCGAGATCTGTGTCACAAACAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAAGAAACATGCTCTGCAAACATCGAGATCTGTGTCACAAACAAG  789

seq1  GGTCACCAGATCAAAGCATTCTTAAGTGTTATCTGCCTGGCATAGCCACG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCAGATCAAAGCATTCTTAAGTGTTATCTGCCTGGCATAGCCACG  839

seq1  CGAGCATTAACAGAACGAGGATACTAGGGGAAAGGCCTCCTAAGACAAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCATTAACAGAACGAGGATACTAGGGGAAAGGCCTCCTAAGACAAGC  889

seq1  AGTGACAAACCTCGCACCCACAATTAAACCCCGCTTCCTCCAATTGCTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAAACCTCGCACCCACAATTAAACCCCGCTTCCTCCAATTGCTGG  939

seq1  CCCAGGATATCTGGCGGCAGCAAAGCACGCTCACCTGATGGTAGGTCTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATATCTGGCGGCAGCAAAGCACGCTCACCTGATGGTAGGTCTGG  989

seq1  AAGATCATACACACAGCACAGTGAGGGGCCTGTTGGGCCATGATCTCATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATACACACAGCACAGTGAGGGGCCTGTTGGGCCATGATCTCATT  1039

seq1  GAATTC  1055
      ||||||
seq2  GAATTC  1045