BAC Information

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BAC

Clone NameB6Ng01-020P01
Chromosome4 (Build37)
Map Location 77,226,632 - 77,274,157
singlet/doubletdoublet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020P01.bB6Ng01-020P01.g
ACCDH853597DH853598
length8301,170
definitionDH853597|Mus musculus domesticus DNA, BAC clone: B6Ng01-020P01, 5' end.DH853598|Mus musculus domesticus DNA, BAC clone: B6Ng01-020P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,273,328 - 77,274,157)(77,226,632 - 77,227,822)
sequence
gaattctgaaacaaaaattgaggaaacagaactttgtatcctataaccct
gaaaaactttacatgttcctgcatatagggatatcaaagataacatagtt
aaaaaaaaactatgtgctgtataaaaatgtgcctcactatatgaattaaa
tatattaaatttaaaattaatattaatttattcctctcattctttacaat
ctaataacacacttatcaatatgttttgttagacccatacacaaatttac
catggccaaaatatgaaatgaataatacatagggcttctctctggagtgc
tggcctgtatttataaattagggactcaattttcactgtcaccataaaga
atgccacatactatatatcacgtatcccctctcccccagaactaatgctt
gttttaatctgaaataaatgtttttgaatttataacagaagttcttatcc
attcatttctgatactaattaggttactttcctccatatatatacctaag
gtaataattgcatcccattgcatggatggccatttatagtacagtacttt
ccaacatgctagctattttcaggaaactgacctcacaattcctatcaatg
gtctgagggaactgaattaatagaaggatttacccccttttatttattct
actatggccaattctccagaggagtgcttcatattgcagacaatgcattc
ttgggtttgctggctggcttaatgggatgttaacatcgattggtgctatt
tctttgtcacctgagaacaactgtaggttttgtggtgtgctactgtttca
taggcttttcacatctgttctaaagtttga
gaattcaacctaatgttgttacagtaaaacaaaaaagaacaaagacactc
tgcaagacacatacatgtgacaatagaaagtcatagatcttgagatctct
ccttgacatcttaaaacactaaatgataggaaggcgattcacagtggaga
gaggattgtgagaatagtttcactattcaggtagaagattaaacccagtt
ctagcttcaagaaggagatgttaggagagcctacatatattttgtgacaa
atgaaagaaaaatatacaaagtgcaatgttgccaaacttcacattcactg
aagattgctaagtttttaaatatgtatacatttagattttgaaatagaat
ataataataacttacttttaagacttacatgtgttttatccccatgattt
tcccagcagctctgttagttgtagattatcactattccctatcaaatgaa
ggctaatcagtagcctgtataacacatacatgctgtttatacctcacaga
cagatatatattctctactcacaaatcaattcaaaaattcacattattct
atccaaacctggacataaagtttgaaagattcaatcatatcttgatcatc
tcctttgttaagaaaagtaggcggtacactagctgacctagtggcacttt
gttgacaattttcctttccccaatgttattatctcatggtttccacttag
ctcctccctacacatcctctcaagtgtgcttgtctgagcaaggacagtat
gatgtttcagatgaactagagtaccatttcactatgccctttgctttatc
taattgttttccttcaatcactttactgagttatctgagctcttggagaa
catgatgtactcagcacacacaggaatcctcttggcatgattttgtcctt
cacttgctcatgccagagtatgctggatacatcataggctcattcagttt
ggtatggcaatggacctcattcatatctgtagaaatatttcttgtgtatt
tgctatatgttgccaatagacatctattcgtactgaaaagcctagagagg
ttgcatcatgctgctgttcctcttggtctttgacacttgacaatattgag
aattgtttcagaagagaatgctggaccatcgccctcaacaaatacctaaa
aagatctatacatactttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_77273328_77274157
seq2: B6Ng01-020P01.b_43_872 (reverse)

seq1  TCAAACTTTAGAACAGATGTGAGAAGCCTATGAAACAGTAGCACACCACA  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCAAACTTTAGAACAGATGTGAAAAGCCTATGAAACAGTAGCACACCACA  50

seq1  AAACCTACAGTTGTTCTCAGGTGACAAAGAAATAGCACCAATCGATGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTACAGTTGTTCTCAGGTGACAAAGAAATAGCACCAATCGATGTTA  100

seq1  ACATCCCATTAAGCCAGCCAGCAAACCCAAGAATGCATTGTCTGCAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCATTAAGCCAGCCAGCAAACCCAAGAATGCATTGTCTGCAATAT  150

seq1  GAAGCACTCCTCTGGAGAATTGGCCATAGTAGAATAAATAAAAGGGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTCCTCTGGAGAATTGGCCATAGTAGAATAAATAAAAGGGGGTA  200

seq1  AATCCTTCTATTAATTCAGTTCCCTCAGACCATTGATAGGAATTGTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTCTATTAATTCAGTTCCCTCAGACCATTGATAGGAATTGTGAGG  250

seq1  TCAGTTTCCTGAAAATAGCTAGCATGTTGGAAAGTACTGTACTATAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCCTGAAAATAGCTAGCATGTTGGAAAGTACTGTACTATAAATG  300

seq1  GCCATCCATGCAATGGGATGCAATTATTACCTTAGGTATATATATGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCATGCAATGGGATGCAATTATTACCTTAGGTATATATATGGAGG  350

seq1  AAAGTAACCTAATTAGTATCAGAAATGAATGGATAAGAACTTCTGTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACCTAATTAGTATCAGAAATGAATGGATAAGAACTTCTGTTATA  400

seq1  AATTCAAAAACATTTATTTCAGATTAAAACAAGCATTAGTTCTGGGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAAACATTTATTTCAGATTAAAACAAGCATTAGTTCTGGGGGAG  450

seq1  AGGGGATACGTGATATATAGTATGTGGCATTCTTTATGGTGACAGTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATACGTGATATATAGTATGTGGCATTCTTTATGGTGACAGTGAAA  500

seq1  ATTGAGTCCCTAATTTATAAATACAGGCCAGCACTCCAGAGAGAAGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTCCCTAATTTATAAATACAGGCCAGCACTCCAGAGAGAAGCCCT  550

seq1  ATGTATTATTCATTTCATATTTTGGCCATGGTAAATTTGTGTATGGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTATTCATTTCATATTTTGGCCATGGTAAATTTGTGTATGGGTCT  600

seq1  AACAAAACATATTGATAAGTGTGTTATTAGATTGTAAAGAATGAGAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACATATTGATAAGTGTGTTATTAGATTGTAAAGAATGAGAGGAA  650

seq1  TAAATTAATATTAATTTTAAATTTAATATATTTAATTCATATAGTGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATATTAATTTTAAATTTAATATATTTAATTCATATAGTGAGGC  700

seq1  ACATTTTTATACAGCACATAGTTTTTTTTTAACTATGTTATCTTTGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTATACAGCACATAGTTTTTTTTTAACTATGTTATCTTTGATAT  750

seq1  CCCTATATGCAGGAACATGTAAAGTTTTTCAGGGTTATAGGATACAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATATGCAGGAACATGTAAAGTTTTTCAGGGTTATAGGATACAAAGT  800

seq1  TCTGTTTCCTCAATTTTTGTTTCAGAATTC  830
      ||||||||||||||||||||||||||||||
seq2  TCTGTTTCCTCAATTTTTGTTTCAGAATTC  830

seq1: chr4_77226632_77227822
seq2: B6Ng01-020P01.g_66_1235

seq1  GAATTCAACCTAATGTTGTTACAGTAAAACAAAAAAGAACAAAGACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTAATGTTGTTACAGTAAAACAAAAAAGAACAAAGACACTC  50

seq1  TGCAAGACACATACATGTGACAATAGAAAGTCATAGATCTTGAGATCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGACACATACATGTGACAATAGAAAGTCATAGATCTTGAGATCTCT  100

seq1  CCTTGACATCTTAAAACACTAAATGATAGGAAGGCGATTCACAGTGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACATCTTAAAACACTAAATGATAGGAAGGCGATTCACAGTGGAGA  150

seq1  GAGGATTGTGAGAATAGTTTCACTATTCAGGTAGAAGATTAAACCCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGTGAGAATAGTTTCACTATTCAGGTAGAAGATTAAACCCAGTT  200

seq1  CTAGCTTCAAGAAGGAGATGTTAGGAGAGCCTACATATATTTTGTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCAAGAAGGAGATGTTAGGAGAGCCTACATATATTTTGTGACAA  250

seq1  ATGAAAGAAAAATATACAAAGTGCAATGTTGCCAAACTTCACATTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAAAAATATACAAAGTGCAATGTTGCCAAACTTCACATTCACTG  300

seq1  AAGATTGCTAAGTTTTTAAATATGTATACATTTAGATTTTGAAATAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGCTAAGTTTTTAAATATGTATACATTTAGATTTTGAAATAGAAT  350

seq1  ATAATAATAACTTACTTTTAAGACTTACATGTGTTTTATCCCCATGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAACTTACTTTTAAGACTTACATGTGTTTTATCCCCATGATTT  400

seq1  TCCCAGCAGCTCTGTTAGTTGTAGATTATCACTATTCCCTATCAAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAGCTCTGTTAGTTGTAGATTATCACTATTCCCTATCAAATGAA  450

seq1  GGCTAATCAGTAGCCTGTATAACACATACATGCTGTTTATACCTCACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATCAGTAGCCTGTATAACACATACATGCTGTTTATACCTCACAGA  500

seq1  CAGATATATATTCTCTACTCACAAATCAATTCAAAAATTCACATTATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATATTCTCTACTCACAAATCAATTCAAAAATTCACATTATTCT  550

seq1  ATCCAAACCTGGACATAAAGTTTGAAAGATTCAATCATATCTTGATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAACCTGGACATAAAGTTTGAAAGATTCAATCATATCTTGATCATC  600

seq1  TCCTTTGTTAAGAAAAGTAGGCGGTACACTAGCTGACCTAGTGGCACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTTAAGAAAAGTAGGCGGTACACTAGCTGACCTAGTGGCACTTT  650

seq1  GTTGACAATTTTCCTTTCCCCAATGTTATTATCTCATGGTTTCCACTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAATTTTCCTTTCCCCAATGTTATTATCTCATGGTTTCCACTTAG  700

seq1  CTCCTCCCTACACATCCTCTCAAGTGTGCTTGTCTGAGCAAGGACAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTACACATCCTCTCAAGTGTGCTTGTCTGAGCAAGGACAGTAT  750

seq1  GATGTTTCAGATGAACTAGAGTACCATTTCACTATGCCCTTTGCTTTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCAGATGAACTAGAGTACCATTTCACTATGCCCTTTGCTTTATC  800

seq1  TAATTGTTTTCCTTCAATCACTTTACTGAGTTATCTGAGCTCTTGGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTTTCCTTCAATCACTTTACTGAGTTATCTGAGCTCTTGGAGAA  850

seq1  CATGATGTACTCAGCACACACAGGAATCCTCTTGGCATGATTTTGTCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTACTCAGCACACACAGGAATCCTCTTGGCATGATTTTGTCCTT  900

seq1  CACTTGCTCATGCCAGAGGTATGCTGGATAACATCATAGGCTCATTCAGT  950
      ||||||||||||||||| ||||||||||| ||||||||||||||||||| 
seq2  CACTTGCTCATGCCAGA-GTATGCTGGAT-ACATCATAGGCTCATTCAG-  947

seq1  TTTGGTATGGCAATGGACCTCATTCATATCTGTAAGAAATATTTCTTGTG  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTGGTATGGCAATGGACCTCATTCATATCTGT-AGAAATATTTCTTGTG  996

seq1  TATTTGCATATATGTTGCCAAATAGACATCTATTCGTTACTGAAAAAGCC  1050
      ||||||| ||||||||||| |||||||||||||||| ||||| |||||||
seq2  TATTTGC-TATATGTTGCC-AATAGACATCTATTCG-TACTG-AAAAGCC  1042

seq1  TAGAGAGGTTGCATCAGTGCTTGGCCTGTTCCTCTTGGTCTTTGACACTT  1100
      |||||||||||||||| ||||    ||||||||||||||||||||||| |
seq2  TAGAGAGGTTGCATCA-TGCT---GCTGTTCCTCTTGGTCTTTGACAC-T  1087

seq1  TGACAAATTATTGAAGAATGGTTTTCAGGAG-GATGGCTGAAACTATCGG  1149
      ||||||  ||||| ||||| | |||||| || ||  ||||  || |||| 
seq2  TGACAA--TATTG-AGAATTG-TTTCAGAAGAGAATGCTG-GACCATCGC  1132

seq1  CTTCAACAAATAATACTTAAAATGATTTCATACATACTTTGT  1191
      | ||||||   ||||| ||||| ||| | |||||||||||||
seq2  CCTCAACA---AATACCTAAAAAGATCT-ATACATACTTTGT  1170