BAC Information

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BAC

Clone NameB6Ng01-021H13
Chromosome4 (Build37)
Map Location 48,153,516 - 48,270,091
singlet/doubletdoublet
Overlap geneStx17, Txndc4
Upstream geneCol15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b, LOC100040788, Nr4a3
Downstream geneInvs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021H13.bB6Ng01-021H13.g
ACCDH853967DH853968
length1,0531,016
definitionDH853967|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H13, 5' end.DH853968|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,269,030 - 48,270,091)(48,153,516 - 48,154,544)
sequence
gaattctggcttctagaattataacataataaatttattttaagtctcta
tgttttgttaatttgtcttggcagtcctagaaaactagttcatgtttaga
atccctgcaaatggaccatttatgtatttatttggtacaactcctatact
acttaacaagaagtcctgaatcattacagtcttttcatgtgataatgacc
tcacacctgaaaaccctaagacttcttctatcaaataataaaagctcttc
ccaccctgggagtgctattcttttttgctccccttttctcctttggtagg
tggtttaaattttatcccattttagtatttgcttcttttgtcccaatcat
ggcacatggtatgcagtagagacatcacaatagttgtgaaaagagtaatt
ggattgagctacactgacttttttcatttctaggcattttacaattctag
gagattttaaaatcagtcttacttaaagtagaaaaggccatcagtaatac
tgtgtctagaaaagaaggcactgtctgattattgtttggacaccagaact
caaatgaaaagaggacagggctggagatcacttccaaaactatgtaagaa
aaatgcttagtttcgttgtagagactagcaagtaaaaagtactaactcag
tttacagctacattaagagactaaattttaaaaatgctgtacctaccaat
aaattttagttttacaaggagaagaaaggcaagtctcactatggtagaaa
taagtagtattctcctatttatcagagaatgagattactacagcagtttc
aataaacattctgtttttaaatactgaaatatttttagatagtctttgta
ggctagacagtttctaatgggcgcttcctcagagatttagtgatcaatat
aaaaatcaaaaagatgaattttgttgttatgttctctttatcatgagatg
taaagactgcactgacgtagatcatgggctcaagatactcagtgataaat
tatcttgctctcttacatttctcttacagtctttagtccccaccagttct
cta
gaattcagtgcagccatgtttgggctccatcccatgcggtcagcctgtgg
catccggctcactggatgctcctgggcttttggtcgtgaggtggggctca
gctgactccttcccagatgatcctctgttgggtttgtgttactgtttacc
agggactgctgagtcacttttcatggtatagaatttttcttctggaataa
taaattaacttacattttcacagtcaatgcattttcttgtattaattaat
ttgttggctgacaaataatgctacttgtagtcttaacattttttaaaatt
gccttgaagggtaaaaaattttcacatatattgtgtgtgtgttcttcatg
tatattatactgatatatttgcaagacactaacatctataatttgagaga
gacagaattctatctatgaaatgtattaactatattctttgatacttatt
tttaaaaactctaattattttaaactagcatttaaaaatagtattttcag
gaccagtgagctagtttatcagtaaaggcacttgccaccaagcctgagag
cccaggctccagcccaggaccagcatggaagaagctgctcatcttttgac
cccacactaaataagtaaatacatacaagtcctgaaaaacatgtatatat
atttgtttatatatatatttttttcactgttttttaaagtataacacagc
cgggcagtggtggcgcatgcctttaatcctagcactcgagaggcagaggc
aggtggatttctgagttcgaggccagcctggtctacagagtgagttccag
gacagccagagctacacagagaaaccctgtctcaaaaaccaaaaaaaaaa
aaaaagaaaaaaaaagaattctgtctcaaattatataataataaataaag
tacaacacagttagagacagagctcatgattctctggtcttaagactacc
aggaagactccgtgggaggcttctggccacttcccgttacaatgataact
caacagccctgtaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_48269030_48270091
seq2: B6Ng01-021H13.b_40_1092 (reverse)

seq1  TAGAG-ACTGGTGGGGACTAAAGAACTGTTAAGAGATATGTAAGGAGAAG  49
      ||||| ||||||||||||||||| |||| ||||||| |||||| ||| ||
seq2  TAGAGAACTGGTGGGGACTAAAG-ACTG-TAAGAGAAATGTAA-GAG-AG  46

seq1  CAAGATAATTTATCACTGAGTAATCTTTGGAGCCCATGACTCTACGTCAG  99
      ||||||||||||||||||||| |||||  |||||||||| ||||||||||
seq2  CAAGATAATTTATCACTGAGT-ATCTT--GAGCCCATGA-TCTACGTCAG  92

seq1  TGCAGTCTTTACATCTCATGATACAGAGAACAATAAACAACAAAATTCAT  149
      ||||||||||||||||||||||| ||||||||   |||||||||||||||
seq2  TGCAGTCTTTACATCTCATGATAAAGAGAACA--TAACAACAAAATTCAT  140

seq1  CTTTTTGATTTTTATATTGATCACTTAATCTCTGAGGAAGCGCCAATTAG  199
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  CTTTTTGATTTTTATATTGATCACTAAATCTCTGAGGAAGCGCCCATTAG  190

seq1  AAACTGTCTAGCCTACAAAGACTATCTAAAAATATTTCAGTATTTAAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTCTAGCCTACAAAGACTATCTAAAAATATTTCAGTATTTAAAAA  240

seq1  CAGAATGTTTATTGAAACTGCTGTAGTAATCTCATTCTCTGATAAATAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTTTATTGAAACTGCTGTAGTAATCTCATTCTCTGATAAATAGG  290

seq1  AGAATACTACTTATTTCTACCATAGTGAGACTTGCCTTTCTTCTCCTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACTACTTATTTCTACCATAGTGAGACTTGCCTTTCTTCTCCTTGT  340

seq1  AAAACTAAAATTTATTGGTAGGTACAGCATTTTTAAAATTTAGTCTCTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAAATTTATTGGTAGGTACAGCATTTTTAAAATTTAGTCTCTTA  390

seq1  ATGTAGCTGTAAACTGAGTTAGTACTTTTTACTTGCTAGTCTCTACAACG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTGTAAACTGAGTTAGTACTTTTTACTTGCTAGTCTCTACAACG  440

seq1  AAACTAAGCATTTTTCTTACATAGTTTTGGAAGTGATCTCCAGCCCTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGCATTTTTCTTACATAGTTTTGGAAGTGATCTCCAGCCCTGTC  490

seq1  CTCTTTTCATTTGAGTTCTGGTGTCCAAACAATAATCAGACAGTGCCTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCATTTGAGTTCTGGTGTCCAAACAATAATCAGACAGTGCCTTC  540

seq1  TTTTCTAGACACAGTATTACTGATGGCCTTTTCTACTTTAAGTAAGACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGACACAGTATTACTGATGGCCTTTTCTACTTTAAGTAAGACTG  590

seq1  ATTTTAAAATCTCCTAGAATTGTAAAATGCCTAGAAATGAAAAAAGTCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATCTCCTAGAATTGTAAAATGCCTAGAAATGAAAAAAGTCAG  640

seq1  TGTAGCTCAATCCAATTACTCTTTTCACAACTATTGTGATGTCTCTACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTCAATCCAATTACTCTTTTCACAACTATTGTGATGTCTCTACTG  690

seq1  CATACCATGTGCCATGATTGGGACAAAAGAAGCAAATACTAAAATGGGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCATGTGCCATGATTGGGACAAAAGAAGCAAATACTAAAATGGGAT  740

seq1  AAAATTTAAACCACCTACCAAAGGAGAAAAGGGGAGCAAAAAAGAATAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAACCACCTACCAAAGGAGAAAAGGGGAGCAAAAAAGAATAGC  790

seq1  ACTCCCAGGGTGGGAAGAGCTTTTATTATTTGATAGAAGAAGTCTTAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGGGTGGGAAGAGCTTTTATTATTTGATAGAAGAAGTCTTAGGG  840

seq1  TTTTCAGGTGTGAGGTCATTATCACATGAAAAGACTGTAATGATTCAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGTGTGAGGTCATTATCACATGAAAAGACTGTAATGATTCAGGA  890

seq1  CTTCTTGTTAAGTAGTATAGGAGTTGTACCAAATAAATACATAAATGGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTTAAGTAGTATAGGAGTTGTACCAAATAAATACATAAATGGTC  940

seq1  CATTTGCAGGGATTCTAAACATGAACTAGTTTTCTAGGACTGCCAAGACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCAGGGATTCTAAACATGAACTAGTTTTCTAGGACTGCCAAGACA  990

seq1  AATTAACAAAACATAGAGACTTAAAATAAATTTATTATGTTATAATTCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAAAACATAGAGACTTAAAATAAATTTATTATGTTATAATTCTA  1040

seq1  GAAGCCAGAATTC  1062
      |||||||||||||
seq2  GAAGCCAGAATTC  1053

seq1: chr4_48153516_48154544
seq2: B6Ng01-021H13.g_68_1083

seq1  GAATTCAGTGCAGCCATGTTTGGGCTCCATCCCATGCGGTCAGCCTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCAGCCATGTTTGGGCTCCATCCCATGCGGTCAGCCTGTGG  50

seq1  CATCCGGCTCACTGGATGCTCCTGGGCTTTTGGTCGTGAGGTGGGGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGGCTCACTGGATGCTCCTGGGCTTTTGGTCGTGAGGTGGGGCTCA  100

seq1  GCTGACTCCTTCCCAGATGATCCTCTGTTGGGTTTGTGTTACTGTTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTCCTTCCCAGATGATCCTCTGTTGGGTTTGTGTTACTGTTTACC  150

seq1  AGGGACTGCTGAGTCACTTTTCATGGTATAGAATTTTTCTTCTGGAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGCTGAGTCACTTTTCATGGTATAGAATTTTTCTTCTGGAATAA  200

seq1  TAAATTAACTTACATTTTCACAGTCAATGCATTTTCTTGTATTAATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAACTTACATTTTCACAGTCAATGCATTTTCTTGTATTAATTAAT  250

seq1  TTGTTGGCTGACAAATAATGCTACTTGTAGTCTTAACATTTTTTAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGCTGACAAATAATGCTACTTGTAGTCTTAACATTTTTTAAAATT  300

seq1  GCCTTGAAGGGTAAAAAATTTTCACATATATTGTGTGTGTGTTCTTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAAGGGTAAAAAATTTTCACATATATTGTGTGTGTGTTCTTCATG  350

seq1  TATATTATACTGATATATTTGCAAGACACTAACATCTATAATTTGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATACTGATATATTTGCAAGACACTAACATCTATAATTTGAGAGA  400

seq1  GACAGAATTCTATCTATGAAATGTATTAACTATATTCTTTGATACTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATTCTATCTATGAAATGTATTAACTATATTCTTTGATACTTATT  450

seq1  TTTAAAAACTCTAATTATTTTAAACTAGCATTTAAAAATAGTATTTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACTCTAATTATTTTAAACTAGCATTTAAAAATAGTATTTTCAG  500

seq1  GACCAGTGAGCTAGTTTATCAGTAAAGGCACTTGCCACCAAGCCTGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTGAGCTAGTTTATCAGTAAAGGCACTTGCCACCAAGCCTGAGAG  550

seq1  CCCAGGCTCCAGCCCAGGACCAGCATGGAAGAAGCTGCTCATCTTTTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTCCAGCCCAGGACCAGCATGGAAGAAGCTGCTCATCTTTTGAC  600

seq1  CCCACACTAAATAAGTAAATACATACAAGTCCTGAAAAACATGTATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTAAATAAGTAAATACATACAAGTCCTGAAAAACATGTATATAT  650

seq1  ATTTGTTTATATATATATTTTTTTCACTG-TTTTTAAAGTATAACACAGC  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTTGTTTATATATATATTTTTTTCACTGTTTTTTAAAGTATAACACAGC  700

seq1  CGGGCAGTGGTGGCGCATGCCTTTAATCCTAGCACTCGAGAGGCAGAGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGTGGTGGCGCATGCCTTTAATCCTAGCACTCGAGAGGCAGAGGC  750

seq1  AGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  800

seq1  GACAGCCAGAGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAA  849
      ||||||||||||||||||||||||||||||||||||||  | ||||||||
seq2  GACAGCCAGAGCTACACAGAGAAACCCTGTCTCAAAAA--CCAAAAAAAA  848

seq1  AAAAAAAGAAAAAAAAAAAGAAATTCTGTCTCAAAAATATATATAAATAA  899
      |||||||||||||||||    ||||||||||| ||| ||||||  |||||
seq2  AAAAAAAGAAAAAAAAA---GAATTCTGTCTC-AAATTATATAATAATAA  894

seq1  ATAAAGTACAACACAGTTAGAGACAGAAGCTCATGATTCTCTGTCTTTAA  949
      |||||||||||||||||||||||||| ||||||||||||||||   ||||
seq2  ATAAAGTACAACACAGTTAGAGACAG-AGCTCATGATTCTCTGGTCTTAA  943

seq1  GACCTACCAGGAAGACTCCGTTGTGAGGCTTCTGGCCCACTTCCCCGTTA  999
      || ||||||||||||||||| || ||||||||||| |||||| |||||||
seq2  GA-CTACCAGGAAGACTCCG-TGGGAGGCTTCTGG-CCACTT-CCCGTTA  989

seq1  CCTAGTGATTACTCAACAGCCCCTGTACCC  1029
      |  | |||| ||||||||| ||||||||||
seq2  C--AATGATAACTCAACAG-CCCTGTACCC  1016