BAC Information

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BAC

Clone NameB6Ng01-022A17
Chromosome4 (Build37)
Map Location 141,235,767 - 141,256,598
singlet/doubletdoublet
Overlap geneDdi2
Upstream geneRcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2
Downstream geneAgmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983, LOC546484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022A17.bB6Ng01-022A17.g
ACCDH854381DH854382
length1,111777
definitionDH854381|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A17, 5' end.DH854382|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,235,767 - 141,236,884)(141,255,817 - 141,256,598)
sequence
gaattcttgctcatactgcatagctttgatgggaagagctaacttcctat
taagaacataagatttgatctctcccttatcacagcacaaaacgtgcaac
agaaaacctaagaaacatctagaaaccatttttggtatacaggatgcaga
aactcctatctggggaaacctaatgtttgaagaaggtaagagtgaatcag
agtggtgaggagccaaggaccacaccaggcggcagtcctctcaggagggc
tgccctctaacctccccctcccgtactcccaagatgtgatgcttccgctg
gtcaaaaaaagtaaggcacgaaagaaaagcaagaacatcaaaggctcacc
ccaagtcctgactgcggctcagtgcaagccctgaggggatgcaggaaaca
ccaaatgctattgtgttaactaccgagagggaaattacacagttctggtc
agccacagactttattaaatcccaagactggcttttacttttctttttcg
gtggtaaggatcaaactcgggacctcacacactacacaggagttccacca
aaccatacccctcagccctgtggcactgctagtgatacaccagacagttc
ggccacaggtagcaacgggaatgcgctgggtgaactgggcatagttgtgt
gcacctgtaatcctagtattctaaaggctgaggccctcctgggctatggc
gagatcctgtctcaaaaaaaacccacaaaacaaaatgaaactttgcctta
cactcttgtcctgctgtttgcaaggcagtttattatatacatagtaggaa
gaaaagccaccagacgtgcggtctctgtagacagaaaagcttttcaacct
atgtaaaatagttatcaataaccttatatttgagatagcttagtatttat
ttatagacatgagctgaaaagttgagacaaatttttatggctttacctag
agatagaaagctgtagagagggacaaacaggcagatgctacacaagctag
tcataaatccacgacacaggtccctacaccaattcctagcacccttctgg
ccagtactgttgggctgttcttcccctttcttgctcttggggataatcga
gggagcaggct
gaattcagacaacaggattggttggtgattctcaagccaggcctaaatac
agatgaacctcagaaaatgggagcagggaaggggtcctttctagcaggcc
agagggaataggtacgccttcctcccacctgaaaatgctatctagatgtg
ataagactgtaagagtggaatggggtgtgggcacatgtattggtagagag
ggcctgggtttgatccagtactctgtaagttgaacacaatggcacagaac
ttagtcccagtactgggagatagaggcaggagaataagaaatttaaggtc
atccacatccttcagtgagtttgaagctagcctgggccctgagaccctgc
cagaaggaggaagagatggggaatgtaaggttgaagatgaacagatcatg
gtggcctgaggcggggcactgacatgtcaggcttgtgcacagtgggaggc
ttcgagggttctggagcaggtaaggagcgatttgaaggtgatggcttagg
atggctgcaggcggaggcggagctggaggaactcagttactctgggtggc
atgcttgctttaaagtacacatgcatggcacagattcagagccagagaag
aatccacttaggaggggagaggtgcaggccagaccgacagctgtggtgag
aaggaaggtcaacattgcagagatagtttcagggaagggtgaagagacta
ggagtcacactgaactgtgctcacacagttagagagtggtgagaatgagg
ctgagaggggacccttccaaggagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_141235767_141236884
seq2: B6Ng01-022A17.b_43_1153

seq1  GAATTCTTGCTCATACTGCATAGCTTTGATGGGAAGAGCTAACTTCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTCATACTGCATAGCTTTGATGGGAAGAGCTAACTTCCTAT  50

seq1  TAAGAACATAAGATTTGATCTCTCCCTTATCACAGCACAAAACGTGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATAAGATTTGATCTCTCCCTTATCACAGCACAAAACGTGCAAC  100

seq1  AGAAAACCTAAGAAACATCTAGAAACCATTTTTGGTATACAGGATGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCTAAGAAACATCTAGAAACCATTTTTGGTATACAGGATGCAGA  150

seq1  AACTCCTATCTGGGGAAACCTAATGTTTGAAGAAGGTAAGAGTGAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTATCTGGGGAAACCTAATGTTTGAAGAAGGTAAGAGTGAATCAG  200

seq1  AGTGGTGAGGAGCCAAGGACCACACCAGGCGGCAGTCCTCTCAGGAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGAGGAGCCAAGGACCACACCAGGCGGCAGTCCTCTCAGGAGGGC  250

seq1  TGCCCTCTAACCTCCCCCTCCCGTACTCCCAAGATGTGATGCTTCCGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTAACCTCCCCCTCCCGTACTCCCAAGATGTGATGCTTCCGCTG  300

seq1  GTCAAAAAAAGTAAGGCACGAAAGAAAAGCAAGAACATCAAAGGCTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAAAAGTAAGGCACGAAAGAAAAGCAAGAACATCAAAGGCTCACC  350

seq1  CCAAGTCCTGACTGCGGCTCAGTGCAAGCCCTGAGGGGATGCAGGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCCTGACTGCGGCTCAGTGCAAGCCCTGAGGGGATGCAGGAAACA  400

seq1  CCAAATGCTATTGTGTTAACTACCGAGAGGGAAATTACACAGTTCTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCTATTGTGTTAACTACCGAGAGGGAAATTACACAGTTCTGGTC  450

seq1  AGCCACAGACTTTATTAAATCCCAAGACTGGCTTTTACTTTTCTTTTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGACTTTATTAAATCCCAAGACTGGCTTTTACTTTTCTTTTTCG  500

seq1  GTGGTAAGGATCAAACTCGGGACCTCACACACTACACAGGAGTTCCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAGGATCAAACTCGGGACCTCACACACTACACAGGAGTTCCACCA  550

seq1  AACCATACCCCTCAGCCCTGTGGCACTGCTAGTGATACACCAGACAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATACCCCTCAGCCCTGTGGCACTGCTAGTGATACACCAGACAGTTC  600

seq1  GGCCACAGGTAGCAACGGGAATGCGCTGGGTGAACTGGGCATAGTTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGGTAGCAACGGGAATGCGCTGGGTGAACTGGGCATAGTTGTGT  650

seq1  GCACCTGTAATCCTAGTATTCTAAAGGCTGAGGCCCTCCTGGGCTATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTAATCCTAGTATTCTAAAGGCTGAGGCCCTCCTGGGCTATGGC  700

seq1  GAGATCCTGTCTCAAAAAAAACCCACAAAACAAAATGAAACTTTGCCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTGTCTCAAAAAAAACCCACAAAACAAAATGAAACTTTGCCTTA  750

seq1  CACTCTTGTCCTGCTGTTTGCAAGGCAGTTTATTATATACATAGTAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGTCCTGCTGTTTGCAAGGCAGTTTATTATATACATAGTAGGAA  800

seq1  GAAAAGCCACCAGACGTGCGGTCTCTGTAGACAGAAAAGCTTTTCAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCACCAGACGTGCGGTCTCTGTAGACAGAAAAGCTTTTCAACCT  850

seq1  ATGTAAAATAGTTATCAATAACCTTATATTTGAGATAGCTTAGTATTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAATAGTTATCAATAACCTTATATTTGAGATAGCTTAGTATTTAT  900

seq1  TTATAGACATGAGCTGAAAAGTTGAGACAAATTTTTATGGCTTTACCTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGACATGAGCTGAAAAGTTGAGACAAATTTTTATGGCTTTACCTAG  950

seq1  AGATAGAAAGCTGTAGAGAGGGACAAACAGGCAGATGCTACACAAGCTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAAAGCTGTAGAGAGGGACAAACAGGCAGATGCTACACAAGCTAG  1000

seq1  TCATAAAATCCACGACACCAGGTCCCCTACACC-ATTCCTAGGCACCC-T  1048
      |||| |||||||||||| ||||| ||||||||| ||||||| |||||| |
seq2  TCAT-AAATCCACGACA-CAGGT-CCCTACACCAATTCCTA-GCACCCTT  1046

seq1  CTTGCCAAAGTACTGTTTTGGGCTGTCTCTCCCCTTTCCTGCCTCTGGAG  1098
      || |||  |||||||  |||||||||   ||||||||| |||   ||| |
seq2  CTGGCC--AGTACTG--TTGGGCTGTTCTTCCCCTTTCTTGCTCTTGGGG  1092

seq1  ATAATCAGAGGGAGCAGGCT  1118
      |||||| |||||||||||||
seq2  ATAATC-GAGGGAGCAGGCT  1111

seq1: chr4_141255817_141256598
seq2: B6Ng01-022A17.g_66_842 (reverse)

seq1  CCACTCCCTTGGATGCGGTCCCCTCTCAGCCTCACTTCTCACCACTCTCT  50
      ||||| ||||||| | |||||||||||||||||| |||||||||||||||
seq2  CCACT-CCTTGGAAG-GGTCCCCTCTCAGCCTCA-TTCTCACCACTCTCT  47

seq1  AACTGTGTGAGCACAGTTCAGTGTTGACTCCTGCTCTCTTCACCCTTCCC  100
      ||||||||||||||||||||||| ||||||||  ||||||||||||||||
seq2  AACTGTGTGAGCACAGTTCAGTG-TGACTCCTAGTCTCTTCACCCTTCCC  96

seq1  TGAAACTATCTCTGCAATGTCTGACCTTCCTTCTCACCACAGCTGTCGGT  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAAACTATCTCTGCAATGT-TGACCTTCCTTCTCACCACAGCTGTCGGT  145

seq1  CTGGCCTGCACCTCTCCCCTCCTAAGTGGATTCTTCTCTGGCTCTGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTGCACCTCTCCCCTCCTAAGTGGATTCTTCTCTGGCTCTGAATC  195

seq1  TGTGCCATGCATGTGTACTTTAAAGCAAGCATGCCACCCAGAGTAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATGCATGTGTACTTTAAAGCAAGCATGCCACCCAGAGTAACTGA  245

seq1  GTTCCTCCAGCTCCGCCTCCGCCTGCAGCCATCCTAAGCCATCACCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCAGCTCCGCCTCCGCCTGCAGCCATCCTAAGCCATCACCTTCA  295

seq1  AATCGCTCCTTACCTGCTCCAGAACCCTCGAAGCCTCCCACTGTGCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCTCCTTACCTGCTCCAGAACCCTCGAAGCCTCCCACTGTGCACAA  345

seq1  GCCTGACATGTCAGTGCCCCGCCTCAGGCCACCATGATCTGTTCATCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACATGTCAGTGCCCCGCCTCAGGCCACCATGATCTGTTCATCTTC  395

seq1  AACCTTACATTCCCCATCTCTTCCTCCTTCTGGCAGGGTCTCAGGGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTACATTCCCCATCTCTTCCTCCTTCTGGCAGGGTCTCAGGGCCCA  445

seq1  GGCTAGCTTCAAACTCACTGAAGGATGTGGATGACCTTAAATTTCTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCTTCAAACTCACTGAAGGATGTGGATGACCTTAAATTTCTTATT  495

seq1  CTCCTGCCTCTATCTCCCAGTACTGGGACTAAGTTCTGTGCCATTGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTCTATCTCCCAGTACTGGGACTAAGTTCTGTGCCATTGTGTT  545

seq1  CAACTTACAGAGTACTGGATCAAACCCAGGCCCTCTCTACCAATACATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTACAGAGTACTGGATCAAACCCAGGCCCTCTCTACCAATACATGT  595

seq1  GCCCACACCCCATTCCACTCTTACAGTCTTATCACATCTAGATAGCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACCCCATTCCACTCTTACAGTCTTATCACATCTAGATAGCATTT  645

seq1  TCAGGTGGGAGGAAGGCGTACCTATTCCCTCTGGCCTGCTAGAAAGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGGAGGAAGGCGTACCTATTCCCTCTGGCCTGCTAGAAAGGACC  695

seq1  CCTTCCCTGCTCCCATTTTCTGAGGTTCATCTGTATTTAGGCCTGGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTGCTCCCATTTTCTGAGGTTCATCTGTATTTAGGCCTGGCTTG  745

seq1  AGAATCACCAACCAATCCTGTTGTCTGAATTC  782
      ||||||||||||||||||||||||||||||||
seq2  AGAATCACCAACCAATCCTGTTGTCTGAATTC  777